Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007215

Physical Location & Seq

Genomic Coordinates Reverse (-)

27119030 .. 27121969

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G262600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAGCGGGAAGCCTTCTCCGTAGTCCAATTCCATGGACCATAAAACGCCCTCTCCGACGTCGTCTTGGCCCCACTTTCCCGCGCCCCATTATGGCTTTGAATTCAGATAGTCGTTACAGAGGCCCCAAGCCACAGAGAAATTGGGTGGCCGATTGGGTCTCCAACAACGACGACGCCGTTCGGAGCTTGCCGATTTATGCGGGAGGCGCCTCCCTCTTGGCCGTCCTCTTCAACCGCACCGTTTCGGACATCGCTCTGGTTGCCGACGCCAGCAGTTCACAGTCTAGAGCTGATTTGTTGACGTTGGGATTGGCTGTGACCAACATACTAGCAGGTCTGGTATGGCTGTCAATCAGACCAAAATCTATATCTAAGGTGAATCCCGAAGGGATCGAATGCGAGAGAATGCATTCTAATCTCCCACACACTCTGCTTTCTGAGTTATTGTGGGCATGGGAATCTTTGTCAGATGTGACGTGCTGCCGGTCTCTTGTTATAGTTTATGATGGCAGATGTATCCTTCAGATTGGTTTTGCAGCAGAATCTTCTAATGGTGATGGCAAGGCTGTGTCTGTGGACGCTGATAAACTGATGCAAGGATCACTCTATCGAGGTGTTATGAAATCAGGAGTTCAGAGCTATTTGGCAAACCTGTATCTTTATCCTGGGAAATCTGAGCTGCCATTTCTGCCTTCAAATACACAGGCAGTAATATTGCAGCCACTTGGAGACAAAGGGATCACAATAATTGGTGGTGACACGGTTAGAGGATTCACATCCGCCGATCAGGCATGGATTTCATTAATTGGAGAGAAGCTGGATTCTACTCTTGCAAAATATGTGGATAACCCCCCATTAGTTGTGCAAGATCCAGTTTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

296

Amino Acids

32.12

Weight (kDa)

8.63

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59840 AT1G59840 AT1G59840
fragaria_vesca	FvH4_4g35320
malus_domestica	MD13G1084200.v1.1
prunus_persica	Prupe.1G262600_v2.0.a1 Prupe.1G262600_v2.0.a1
pyrus_communis	pycom13g07270
rosa_chinensis	RchiOBHm_Chr4g0444951
rosa_laevigata	RLG00000005784
rosa_multiflora	Rmu_co8283785.1_g000001 Rmu_sc0011561.1_g000003 Rmu_sc0026817.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074040 Rroxscaffold_5G00385440
rosa_rugosa	Rorug04G0356500 Rorug04G0356500 Rorug04G0356600 Rorug04G0356700
rosa_samantha	Rh4AG418200 Rh4BG429900 Rh4CG444600 Rh4DG239800 Rh4DG425800
rosa_wichuraiana	Rw4G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	209
AccII	CGCG	1 cut(s)	85
AciI	CCGC	5 cut(s)	8, 83, 203, 238, 783
AclWI	GGATC	4 cut(s)	401, 610, 749, 866
AcoI	YGGCCR	2 cut(s)	150, 222
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	509
AcyI	GRCGYC	4 cut(s)	61, 177, 210, 270
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	103, 235, 699, 883
AjiI	CACGTC	1 cut(s)	480
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	5 cut(s)	189, 293, 642, 682, 820
AluI	AGCT	5 cut(s)	189, 293, 642, 682, 820
Alw26I	GTCTC	3 cut(s)	166, 495, 726
AlwI	GGATC	4 cut(s)	401, 610, 749, 866
AoxI	GGCC	4 cut(s)	70, 124, 150, 222
ApeKI	GCWGC	4 cut(s)	483, 539, 682, 721
ApoI	RAATTY	1 cut(s)	103
AseI	ATTAAT	1 cut(s)	806
Asp700I	GAANNNNTTC	1 cut(s)	412
AspLEI	GCGC	2 cut(s)	87, 212
AspS9I	GGNCC	3 cut(s)	39, 71, 125
AsuHPI	GGTGA	3 cut(s)	391, 569, 770
AvaII	GGWCC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	209
BbvI	GCAGC	4 cut(s)	470, 551, 669, 733
BccI	CCATC	2 cut(s)	503, 554
BceAI	ACGGC	2 cut(s)	164, 209
BciT130I	CCWGG	1 cut(s)	669
BciVI	GTATCC	1 cut(s)	530
BcoDI	GTCTC	3 cut(s)	166, 495, 726
BfaI	CTAG	2 cut(s)	288, 332
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	530
BglI	GCCNNNNNGGC	1 cut(s)	791
BisI	GCNGC	4 cut(s)	484, 540, 683, 722
BlsI	GCNGC	4 cut(s)	485, 541, 684, 723
Bme1390I	CCNGG	1 cut(s)	669
Bme18I	GGWCC	1 cut(s)	39
BmgBI	CACGTC	1 cut(s)	480
BmgT120I	GGNCC	3 cut(s)	39, 71, 125
BmiI	GGNNCC	3 cut(s)	73, 127, 211
BmrFI	CCNGG	1 cut(s)	669
BmsI	GCATC	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	778
BsaHI	GRCGYC	4 cut(s)	61, 177, 210, 270
BsaI	GGTCTC	2 cut(s)	166, 495
BsaJI	CCNNGG	2 cut(s)	35, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	875
Bse8I	GATNNNNATC	1 cut(s)	778
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	35, 668
BseGI	GGATG	1 cut(s)	779
BseJI	GATNNNNATC	1 cut(s)	778
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	2 cut(s)	432, 669
BseNI	ACTGG	1 cut(s)	875
BseXI	GCAGC	4 cut(s)	470, 551, 669, 733
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	72, 126, 152, 224
BshNI	GGYRCC	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	3 cut(s)	166, 495, 726
BsmI	GAATGC	3 cut(s)	404, 412, 414
BsnI	GGCC	4 cut(s)	72, 126, 152, 224
Bso31I	GGTCTC	2 cut(s)	166, 495
Bsp143I	GATC	5 cut(s)	393, 602, 741, 787, 871
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	5 cut(s)	8, 83, 203, 238, 783
BspANI	GGCC	4 cut(s)	72, 126, 152, 224
BspCNI	CTCAG	2 cut(s)	433, 670
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	3 cut(s)	73, 127, 211
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	4 cut(s)	401, 610, 749, 866
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	2 cut(s)	166, 495
BsrFI	RCCGGY	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	875
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	2 cut(s)	35, 668
BssMI	GATC	5 cut(s)	393, 602, 741, 787, 871
BssNI	GRCGYC	4 cut(s)	61, 177, 210, 270
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	3 cut(s)	244, 285, 766
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	4 cut(s)	61, 177, 210, 270
BstC8I	GCNNGC	2 cut(s)	191, 274
BstDEI	CTNAG	3 cut(s)	375, 441, 678
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	779
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	87, 212
BstKTI	GATC	5 cut(s)	396, 605, 744, 790, 874
BstMAI	GTCTC	3 cut(s)	166, 495, 726
BstMBI	GATC	5 cut(s)	393, 602, 741, 787, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 263, 691, 791
BstNI	CCWGG	1 cut(s)	669
BstSCI	CCNGG	1 cut(s)	667
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	4 cut(s)	470, 551, 669, 733
BstX2I	RGATCY	1 cut(s)	871
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	871
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	4 cut(s)	72, 126, 152, 224
BtgI	CCRYGG	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	238
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	779
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	191, 274
CfoI	GCGC	2 cut(s)	87, 212
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	3 cut(s)	39, 71, 125
CseI	GACGC	3 cut(s)	185, 278, 590
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviAII	CATG	3 cut(s)	36, 456, 795
DdeI	CTNAG	3 cut(s)	375, 441, 678
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	5 cut(s)	395, 604, 743, 789, 873
DpnII	GATC	5 cut(s)	393, 602, 741, 787, 871
EaeI	YGGCCR	2 cut(s)	150, 222
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	772
Eco130I	CCWWGG	1 cut(s)	35
Eco31I	GGTCTC	2 cut(s)	166, 495
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	3 cut(s)	39, 459, 798
FatI	CATG	3 cut(s)	35, 455, 794
FauI	CCCGC	2 cut(s)	90, 196
Fnu4HI	GCNGC	4 cut(s)	484, 540, 683, 722
FokI	GGATG	1 cut(s)	766
Fsp4HI	GCNGC	4 cut(s)	484, 540, 683, 722
FspBI	CTAG	2 cut(s)	288, 332
GlaI	GCGC	2 cut(s)	86, 211
GluI	GCNGC	4 cut(s)	484, 540, 683, 722
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	4 cut(s)	72, 126, 152, 224
HapII	CCGG	1 cut(s)	487
HgaI	GACGC	3 cut(s)	185, 278, 590
HhaI	GCGC	2 cut(s)	87, 212
Hin1I	GRCGYC	4 cut(s)	61, 177, 210, 270
Hin1II	CATG	3 cut(s)	39, 459, 798
Hin6I	GCGC	2 cut(s)	85, 210
HinP1I	GCGC	2 cut(s)	85, 210
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	5 cut(s)	382, 461, 545, 774, 824
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	3 cut(s)	391, 569, 770
Hpy166II	GTNNAC	3 cut(s)	281, 303, 580
Hpy188III	TCNNGA	3 cut(s)	288, 386, 630
Hpy8I	GTNNAC	3 cut(s)	281, 303, 580
Hpy99I	CGWCG	5 cut(s)	63, 66, 176, 179, 272
HpyAV	CCTTC	4 cut(s)	26, 383, 533, 705
HpyCH4III	ACNGT	3 cut(s)	244, 285, 766
HpyCH4IV	ACGT	3 cut(s)	61, 305, 479
HpyCH4V	TGCA	6 cut(s)	412, 539, 598, 721, 836, 868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 263, 691, 791
HpyF3I	CTNAG	3 cut(s)	375, 441, 678
HpySE526I	ACGT	3 cut(s)	61, 305, 479
Hsp92I	GRCGYC	4 cut(s)	61, 177, 210, 270
Hsp92II	CATG	3 cut(s)	39, 459, 798
HspAI	GCGC	2 cut(s)	85, 210
KasI	GGCGCC	1 cut(s)	209
Kzo9I	GATC	5 cut(s)	393, 602, 741, 787, 871
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	4 cut(s)	470, 551, 669, 733
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	2 cut(s)	288, 332
MaeII	ACGT	3 cut(s)	61, 305, 479
MaeIII	GTNAC	4 cut(s)	116, 319, 475, 758
MalI	GATC	5 cut(s)	395, 604, 743, 789, 873
MboI	GATC	5 cut(s)	393, 602, 741, 787, 871
MboII	GAAGA	2 cut(s)	223, 540
MflI	RGATCY	1 cut(s)	871
MluCI	AATT	5 cut(s)	30, 103, 142, 750, 807
Mly113I	GGCGCC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	82, 189
MnlI	CCTC	8 cut(s)	63, 116, 200, 223, 227, 239, 608, 764
Mph1103I	ATGCAT	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	412
MseI	TTAA	1 cut(s)	806
MspI	CCGG	1 cut(s)	487
MspR9I	CCNGG	1 cut(s)	669
Mva1269I	GAATGC	3 cut(s)	404, 412, 414
MvaI	CCWGG	1 cut(s)	669
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	4 cut(s)	209, 263, 691, 791
NarI	GGCGCC	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	5 cut(s)	393, 602, 741, 787, 871
NlaIII	CATG	3 cut(s)	39, 459, 798
NlaIV	GGNNCC	3 cut(s)	73, 127, 211
NmuCI	GTSAC	3 cut(s)	319, 475, 758
NsiI	ATGCAT	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	2 cut(s)	55, 177
PctI	GAATGC	3 cut(s)	404, 412, 414
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	5 cut(s)	382, 461, 545, 774, 824
PflFI	GACNNNGTC	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	485, 541, 684, 723
PluTI	GGCGCC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	667
PspN4I	GGNNCC	3 cut(s)	73, 127, 211
PspPI	GGNCC	3 cut(s)	39, 71, 125
PsuI	RGATCY	1 cut(s)	871
PsyI	GACNNNGTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	806
SatI	GCNGC	4 cut(s)	484, 540, 683, 722
Sau3AI	GATC	5 cut(s)	393, 602, 741, 787, 871
Sau96I	GGNCC	3 cut(s)	39, 71, 125
ScrFI	CCNGG	1 cut(s)	669
SfaNI	GCATC	1 cut(s)	585
SfoI	GGCGCC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	5 cut(s)	30, 103, 142, 750, 807
SsiI	CCGC	5 cut(s)	8, 83, 203, 238, 783
SspDI	GGCGCC	1 cut(s)	209
SspI	AATATT	1 cut(s)	717
SspMI	CTAG	2 cut(s)	288, 332
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	3 cut(s)	244, 285, 766
TaiI	ACGT	3 cut(s)	64, 308, 482
TaqI	TCGA	2 cut(s)	396, 613
TasI	AATT	5 cut(s)	30, 103, 142, 750, 807
TfiI	GAWTC	5 cut(s)	382, 461, 545, 774, 824
Tru1I	TTAA	1 cut(s)	806
Tru9I	TTAA	1 cut(s)	806
TseFI	GTSAC	3 cut(s)	319, 475, 758
TseI	GCWGC	4 cut(s)	483, 539, 682, 721
Tsp45I	GTSAC	3 cut(s)	319, 475, 758
TspDTI	ATGAA	2 cut(s)	638, 792
TspGWI	ACGGA	1 cut(s)	11
Tth111I	GACNNNGTC	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	39
VspI	ATTAAT	1 cut(s)	806
XapI	RAATTY	1 cut(s)	103
XbaI	TCTAGA	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	2 cut(s)	288, 332
ZraI	GACGTC	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.