Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007215

Physical Location & Seq

Genomic Coordinates Reverse (-)

52890690 .. 52892581

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0356600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCAGTCTCCATTCCCATAGTGGCCATCATCACCTCTCTCCACCTCATCGCCTTCATTTTCGCCGTCGGCGCCGAACGACGCCGTAGCACCGCGAAGATAGTGCCCGACGAGTACGACGAGCAAACCTACTGCGTTTACGGCACCGACGCTTCCACCGTGTACGGACTGGCCGCGTTCGGGCTTCTTCTGCTCAGCCACACGGTGCTTAACGGCGTCACCAGGTGTCTCTGCTTCGGCAAAGGCTTAATCACCGGCTCCTCTACTACTTGGACTGTCTTCTTCTTCGTCTTCTCCTGGACAACCTTTTTGGGAGCCGAGGCATGCTTATTGGCAGGGTCAGCAAGGAATGCCTATCACACAAAGTACAGGGGGAAATTTAACCTAGACGACTTGTCCTGTGCCACTCTGCGTAAGGGCGTGTTCGCTGCAGCAGCTGCTCTTACACTGTTGTCGCTGATAGGGTCAAACCTTTACTACTGGACACATTCCAAAGCTGATACTGGAGGGTGGGAGAAGCACCGCAATGAAGGCCTTGGCATGGGCAATTCCAATTATGGGCAGCATGAGCAGCAGCAGCAGCAGCAGCAAACCACTGGATTCGAGAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

204

Amino Acids

22.32

Weight (kDa)

8.26

Isoelectric Point (pI)

22.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1218	PF06749	59 - 153	2.1e-26	Protein of unknown function (DUF1218)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59840 AT1G59840 AT1G59840
fragaria_vesca	FvH4_4g35320
malus_domestica	MD13G1084200.v1.1
prunus_persica	Prupe.1G262600_v2.0.a1 Prupe.1G262600_v2.0.a1
pyrus_communis	pycom13g07270
rosa_chinensis	RchiOBHm_Chr4g0444951
rosa_laevigata	RLG00000005784
rosa_multiflora	Rmu_co8283785.1_g000001 Rmu_sc0011561.1_g000003 Rmu_sc0026817.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074040 Rroxscaffold_5G00385440
rosa_rugosa	Rorug04G0356500 Rorug04G0356500 Rorug04G0356600 Rorug04G0356700
rosa_samantha	Rh4AG418200 Rh4BG429900 Rh4CG444600 Rh4DG239800 Rh4DG425800
rosa_wichuraiana	Rw4G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	71, 143
AccII	CGCG	2 cut(s)	95, 176
AciI	CCGC	3 cut(s)	93, 174, 523
AcoI	YGGCCR	2 cut(s)	24, 171
AcsI	RAATTY	1 cut(s)	377
AcyI	GRCGYC	3 cut(s)	72, 82, 216
AdeI	CACNNNGTG	2 cut(s)	205, 225
AfaI	GTAC	3 cut(s)	116, 164, 368
AfiI	CCNNNNNNNGG	3 cut(s)	180, 541, 558
AhdI	GACNNNNNGTC	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	221, 296
AluBI	AGCT	2 cut(s)	437, 497
AluI	AGCT	2 cut(s)	437, 497
Alw26I	GTCTC	2 cut(s)	13, 233
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	3 cut(s)	24, 171, 532
ApoI	RAATTY	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	25, 211, 244
BaeGI	GKGCMC	1 cut(s)	108
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	2 cut(s)	71, 143
BbsI	GAAGAC	2 cut(s)	271, 283
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	4 cut(s)	50, 69, 157, 229
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	2 cut(s)	223, 298
BcoDI	GTCTC	2 cut(s)	13, 233
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	223, 298
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmiI	GGNNCC	4 cut(s)	73, 145, 259, 316
BmrFI	CCNGG	2 cut(s)	223, 298
BpiI	GAAGAC	2 cut(s)	271, 283
BpmI	CTGGAG	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	194
BsaHI	GRCGYC	3 cut(s)	72, 82, 216
BsaJI	CCNNGG	2 cut(s)	318, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 541, 558
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	4 cut(s)	174, 485, 508, 601
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	223, 298
BseDI	CCNNGG	2 cut(s)	318, 535
BseLI	CCNNNNNNNGG	3 cut(s)	180, 541, 558
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	4 cut(s)	174, 485, 508, 601
BseRI	GAGGAG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	108
Bsh1236I	CGCG	2 cut(s)	95, 176
BshFI	GGCC	3 cut(s)	26, 173, 534
BshNI	GGYRCC	2 cut(s)	71, 143
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	180, 541, 558
BsmAI	GTCTC	2 cut(s)	13, 233
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	26, 173, 534
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	194
BspACI	CCGC	3 cut(s)	93, 174, 523
BspANI	GGCC	3 cut(s)	26, 173, 534
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	2 cut(s)	95, 176
BspLI	GGNNCC	4 cut(s)	73, 145, 259, 316
BspMAI	CTGCAG	1 cut(s)	433
BspT107I	GGYRCC	2 cut(s)	71, 143
BsrDI	GCAATG	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	4 cut(s)	174, 485, 508, 601
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	318, 535
BssNI	GRCGYC	3 cut(s)	72, 82, 216
BssT1I	CCWWGG	1 cut(s)	535
Bst2UI	CCWGG	2 cut(s)	223, 298
Bst4CI	ACNGT	4 cut(s)	160, 205, 277, 450
BstACI	GRCGYC	3 cut(s)	72, 82, 216
BstAPI	GCANNNNNTGC	2 cut(s)	350, 437
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	194
BstFNI	CGCG	2 cut(s)	95, 176
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstMAI	GTCTC	2 cut(s)	13, 233
BstNI	CCWGG	2 cut(s)	223, 298
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	221, 296
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	2 cut(s)	95, 176
BstV2I	GAAGAC	2 cut(s)	271, 283
BsuRI	GGCC	3 cut(s)	26, 173, 534
BtgZI	GCGATG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	446, 594
Cac8I	GCNNGC	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	254
CseI	GACGC	3 cut(s)	90, 158, 205
CsiI	ACCWGGT	1 cut(s)	221
Csp6I	GTAC	3 cut(s)	115, 163, 367
CviAII	CATG	3 cut(s)	324, 541, 566
CviQI	GTAC	3 cut(s)	115, 163, 367
DdeI	CTNAG	1 cut(s)	194
DinI	GGCGCC	1 cut(s)	73
DraIII	CACNNNGTG	2 cut(s)	205, 225
DriI	GACNNNNNGTC	1 cut(s)	394
EaeI	YGGCCR	2 cut(s)	24, 171
Eam1105I	GACNNNNNGTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	221, 296
EcoT14I	CCWWGG	1 cut(s)	535
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	3 cut(s)	327, 544, 569
FaiI	YATR	5 cut(s)	20, 325, 542, 558, 567
FatI	CATG	3 cut(s)	323, 540, 565
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	26, 173, 534
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	3 cut(s)	90, 158, 205
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	3 cut(s)	72, 82, 216
Hin1II	CATG	3 cut(s)	327, 544, 569
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	600
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	3 cut(s)	25, 211, 244
Hpy166II	GTNNAC	2 cut(s)	139, 163
Hpy188III	TCNNGA	1 cut(s)	604
Hpy8I	GTNNAC	2 cut(s)	139, 163
Hpy99I	CGWCG	5 cut(s)	71, 84, 113, 122, 152
HpyAV	CCTTC	3 cut(s)	64, 524, 601
HpyCH4III	ACNGT	4 cut(s)	160, 205, 277, 450
HpyCH4V	TGCA	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	194
Hsp92I	GRCGYC	3 cut(s)	72, 82, 216
Hsp92II	CATG	3 cut(s)	327, 544, 569
HspAI	GCGC	1 cut(s)	72
KasI	GGCGCC	1 cut(s)	71
LmnI	GCTCC	2 cut(s)	263, 314
MabI	ACCWGGT	1 cut(s)	221
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	6 cut(s)	109, 179, 271, 274, 277, 283
MhlI	GDGCHC	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	3 cut(s)	377, 547, 553
MluNI	TGGCCA	1 cut(s)	26
Mly113I	GGCGCC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	46, 56, 271, 313, 500
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	3 cut(s)	210, 248, 381
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	223, 298
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	2 cut(s)	223, 298
MvnI	CGCG	2 cut(s)	95, 176
NarI	GGCGCC	1 cut(s)	72
NlaIII	CATG	3 cut(s)	327, 544, 569
NlaIV	GGNNCC	4 cut(s)	73, 145, 259, 316
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 156
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	600
PfoI	TCCNGGA	1 cut(s)	296
PluTI	GGCGCC	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	221, 296
PspGI	CCWGG	2 cut(s)	221, 296
PspN4I	GGNNCC	4 cut(s)	73, 145, 259, 316
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	3 cut(s)	116, 164, 368
RsaNI	GTAC	3 cut(s)	115, 163, 367
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	210, 248, 381
ScrFI	CCNGG	2 cut(s)	223, 298
SduI	GDGCHC	1 cut(s)	108
SexAI	ACCWGGT	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	429
SfoI	GGCGCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	525
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	3 cut(s)	377, 547, 553
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	3 cut(s)	93, 174, 523
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	386
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	221, 296
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	4 cut(s)	160, 205, 277, 450
TaqI	TCGA	1 cut(s)	603
TasI	AATT	3 cut(s)	377, 547, 553
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	600
Tru1I	TTAA	3 cut(s)	210, 248, 381
Tru9I	TTAA	3 cut(s)	210, 248, 381
TscAI	CASTG	2 cut(s)	453, 601
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	46, 543
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	453, 601
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.