Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026817.1

Orthogroup ID

OG0007215

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1918

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

tctagagctgatttgttgacattgggattggctgtgaccaacatactagcaggtctggtgaatcccaaaggggtcgaatgccggaggatgcattctgatctccccacaactctagtttccgagttattgtggtctcttgttatagtttatggtggcagaaatatacttcagattggttttgcagctgcatcttccaatggtgatggcaaagctgtggctgtggatgctcataaactgattcaaggatccctctatcgaggtgttatgaaatcaggagttcagagctatttggccaacctagctctctatcctgggaagtctgagctgccatttctaccttcaaacacacaggcagtaatattgcagccacttggagacagaggaattgcaataattggtggtgacacaataaggggattcacagcctctgatcaggcatggatttcattaatcggagagaagctggatgctacactagcacgatgtgtagataacctcccgttgtcgcaagacccagttttgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

175

Amino Acids

18.48

Weight (kDa)

7.75

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59840 AT1G59840 AT1G59840
fragaria_vesca	FvH4_4g35320
malus_domestica	MD13G1084200.v1.1
prunus_persica	Prupe.1G262600_v2.0.a1 Prupe.1G262600_v2.0.a1
pyrus_communis	pycom13g07270
rosa_chinensis	RchiOBHm_Chr4g0444951
rosa_laevigata	RLG00000005784
rosa_multiflora	Rmu_co8283785.1_g000001 Rmu_sc0011561.1_g000003 Rmu_sc0026817.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074040 Rroxscaffold_5G00385440
rosa_rugosa	Rorug04G0356500 Rorug04G0356500 Rorug04G0356600 Rorug04G0356700
rosa_samantha	Rh4AG418200 Rh4BG429900 Rh4CG444600 Rh4DG239800 Rh4DG425800
rosa_wichuraiana	Rw4G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	41
AclWI	GGATC	2 cut(s)	240, 253
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	485
AgsI	TTSAA	3 cut(s)	242, 342, 523
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	7 cut(s)	8, 185, 212, 285, 302, 325, 463
AluI	AGCT	7 cut(s)	8, 185, 212, 285, 302, 325, 463
Alw26I	GTCTC	2 cut(s)	138, 369
AlwI	GGATC	2 cut(s)	240, 253
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	4 cut(s)	182, 185, 325, 364
AseI	ATTAAT	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	70, 212, 413
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	245
BbvI	GCAGC	4 cut(s)	172, 194, 312, 376
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	138, 369
BfaI	CTAG	5 cut(s)	3, 47, 113, 299, 476
BfuAI	ACCTGC	1 cut(s)	41
BisI	GCNGC	4 cut(s)	183, 186, 326, 365
BlsI	GCNGC	4 cut(s)	184, 187, 327, 366
Bme1390I	CCNGG	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	4 cut(s)	78, 197, 214, 457
BmuI	ACTGGG	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	3 cut(s)	93, 229, 472
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	515
BseXI	GCAGC	4 cut(s)	172, 194, 312, 376
BshFI	GGCC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	82
BsmAI	GTCTC	2 cut(s)	138, 369
BsmI	GAATGC	2 cut(s)	83, 91
BsnI	GGCC	1 cut(s)	293
Bso31I	GGTCTC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	97, 245, 430
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	41
BspPI	GGATC	2 cut(s)	240, 253
BspTNI	GGTCTC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	3 cut(s)	97, 245, 430
Bst2UI	CCWGG	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	93, 229, 472
BstKTI	GATC	3 cut(s)	100, 248, 433
BstMAI	GTCTC	2 cut(s)	138, 369
BstMBI	GATC	3 cut(s)	97, 245, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 299, 476
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	4 cut(s)	172, 194, 312, 376
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	3 cut(s)	93, 229, 472
BveI	ACCTGC	1 cut(s)	41
CaiI	CAGNNNCTG	1 cut(s)	428
CviAII	CATG	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	99, 247, 432
DpnII	GATC	3 cut(s)	97, 245, 430
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	93
FaeI	CATG	1 cut(s)	441
FaiI	YATR	7 cut(s)	44, 143, 150, 164, 231, 266, 439
FatI	CATG	1 cut(s)	437
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	4 cut(s)	183, 186, 326, 365
FokI	GGATG	3 cut(s)	100, 236, 479
Fsp4HI	GCNGC	4 cut(s)	183, 186, 326, 365
FspBI	CTAG	5 cut(s)	3, 47, 113, 299, 476
GluI	GCNGC	4 cut(s)	183, 186, 326, 365
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	1 cut(s)	441
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	61, 238, 417
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	3 cut(s)	70, 212, 413
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	7 cut(s)	97, 121, 171, 282, 322, 430, 455
Hpy188III	TCNNGA	2 cut(s)	3, 273
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	348
HpyCH4V	TGCA	5 cut(s)	91, 182, 188, 364, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 299, 476
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	3 cut(s)	97, 245, 430
LpnPI	CCDG	9 cut(s)	36, 41, 95, 258, 297, 324, 335, 419, 449
Lsp1109I	GCAGC	4 cut(s)	172, 194, 312, 376
LweI	GCATC	4 cut(s)	78, 197, 214, 457
MaeI	CTAG	5 cut(s)	3, 47, 113, 299, 476
MaeIII	GTNAC	2 cut(s)	34, 401
MalI	GATC	3 cut(s)	99, 247, 432
MboI	GATC	3 cut(s)	97, 245, 430
MboII	GAAGA	1 cut(s)	183
MflI	RGATCY	1 cut(s)	245
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	2 cut(s)	384, 393
MluNI	TGGCCA	1 cut(s)	293
MnlI	CCTC	6 cut(s)	78, 251, 260, 374, 436, 506
Mox20I	TGGCCA	1 cut(s)	293
Mph1103I	ATGCAT	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	2 cut(s)	83, 91
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	224, 299, 476
NdeII	GATC	3 cut(s)	97, 245, 430
NlaIII	CATG	1 cut(s)	441
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	34, 401
NsiI	ATGCAT	1 cut(s)	93
PctI	GAATGC	2 cut(s)	83, 91
PfeI	GAWTC	3 cut(s)	61, 238, 417
PkrI	GCNGC	4 cut(s)	184, 187, 327, 366
PshBI	ATTAAT	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	4 cut(s)	183, 186, 326, 365
Sau3AI	GATC	3 cut(s)	97, 245, 430
ScrFI	CCNGG	1 cut(s)	312
SfaNI	GCATC	4 cut(s)	78, 197, 214, 457
Sse9I	AATT	2 cut(s)	384, 393
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	5 cut(s)	3, 47, 113, 299, 476
StyD4I	CCNGG	1 cut(s)	310
TaqI	TCGA	2 cut(s)	75, 256
TasI	AATT	2 cut(s)	384, 393
TfiI	GAWTC	3 cut(s)	61, 238, 417
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TseFI	GTSAC	2 cut(s)	34, 401
TseI	GCWGC	4 cut(s)	182, 185, 325, 364
Tsp45I	GTSAC	2 cut(s)	34, 401
TspDTI	ATGAA	2 cut(s)	281, 435
VspI	ATTAAT	1 cut(s)	449
XbaI	TCTAGA	1 cut(s)	2
XspI	CTAG	5 cut(s)	3, 47, 113, 299, 476
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.