Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007215

Physical Location & Seq

Genomic Coordinates Forward (+)

44825487 .. 44828418

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG239800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCTGCAGGTCGGGCTGCTGGGTTTGGCAAGGCGCGGGGCGGCTGGGCGGGGCAGCAGTGGTGCGCGGCGTCTGGGCGCAGGGGCGCTGGGGAGGAGGCTGGCCTGGCTGGGCTGGCATGGGAATCTCTGTCAGATGTGACATGTTACAGGTTTCTTGTTATAGTTTATGGTGGCAGAGCTGCATCTTCCAATAATGATGGCGAAGCTGTGGCTATGGATGCTGATAAACTGATTCAAGGATCCCTTTATCGAGGTATTATGAAATCAAGAGTTCGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

94

Amino Acids

9.83

Weight (kDa)

9.69

Isoelectric Point (pI)

17.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59840 AT1G59840 AT1G59840
fragaria_vesca	FvH4_4g35320
malus_domestica	MD13G1084200.v1.1
prunus_persica	Prupe.1G262600_v2.0.a1 Prupe.1G262600_v2.0.a1
pyrus_communis	pycom13g07270
rosa_chinensis	RchiOBHm_Chr4g0444951
rosa_laevigata	RLG00000005784
rosa_multiflora	Rmu_co8283785.1_g000001 Rmu_sc0011561.1_g000003 Rmu_sc0026817.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074040 Rroxscaffold_5G00385440
rosa_rugosa	Rorug04G0356500 Rorug04G0356500 Rorug04G0356600 Rorug04G0356700
rosa_samantha	Rh4AG418200 Rh4BG429900 Rh4CG444600 Rh4DG239800 Rh4DG425800
rosa_wichuraiana	Rw4G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	37, 68
AciI	CCGC	4 cut(s)	37, 42, 50, 68
AclWI	GGATC	2 cut(s)	237, 250
AcyI	GRCGYC	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	2 cut(s)	182, 209
AluI	AGCT	2 cut(s)	182, 209
AlwI	GGATC	2 cut(s)	237, 250
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	3 cut(s)	17, 55, 182
AspLEI	GCGC	4 cut(s)	37, 68, 81, 89
BamHI	GGATCC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	4, 67, 169
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	5 cut(s)	18, 43, 56, 69, 183
BlsI	GCNGC	5 cut(s)	19, 44, 57, 70, 184
Bme1390I	CCNGG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	194, 211
BsaHI	GRCGYC	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	3 cut(s)	4, 67, 169
BseYI	CCCAGC	4 cut(s)	20, 45, 89, 110
Bsh1236I	CGCG	2 cut(s)	37, 68
BshFI	GGCC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	242
BspACI	CCGC	4 cut(s)	37, 42, 50, 68
BspANI	GGCC	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	37, 68
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	2 cut(s)	237, 250
BssMI	GATC	1 cut(s)	242
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	103, 117
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	2 cut(s)	37, 68
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	4 cut(s)	37, 68, 81, 89
BstKTI	GATC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 107, 116, 221
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	2 cut(s)	37, 68
BstV1I	GCAGC	3 cut(s)	4, 67, 169
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	2 cut(s)	103, 117
CfoI	GCGC	4 cut(s)	37, 68, 81, 89
CseI	GACGC	1 cut(s)	60
CviAII	CATG	2 cut(s)	120, 144
CviJI	RGCY	9 cut(s)	17, 45, 101, 105, 110, 115, 182, 209, 215
CviKI_1	RGCY	9 cut(s)	17, 45, 101, 105, 110, 115, 182, 209, 215
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	123, 147
FaiI	YATR	6 cut(s)	121, 145, 164, 171, 218, 263
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	2 cut(s)	119, 143
FauI	CCCGC	2 cut(s)	30, 43
Fnu4HI	GCNGC	5 cut(s)	18, 43, 56, 69, 183
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	5 cut(s)	18, 43, 56, 69, 183
GlaI	GCGC	4 cut(s)	36, 67, 80, 88
GluI	GCNGC	5 cut(s)	18, 43, 56, 69, 183
GsaI	CCCAGC	4 cut(s)	24, 49, 93, 114
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	105
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	4 cut(s)	37, 68, 81, 89
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	123, 147
Hin6I	GCGC	4 cut(s)	35, 66, 79, 87
HinP1I	GCGC	4 cut(s)	35, 66, 79, 87
HinfI	GANTC	2 cut(s)	125, 235
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	8, 185
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 107, 116, 221
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	123, 147
HspAI	GCGC	4 cut(s)	35, 66, 79, 87
Kzo9I	GATC	1 cut(s)	242
Lsp1109I	GCAGC	3 cut(s)	4, 67, 169
LweI	GCATC	2 cut(s)	194, 211
MaeIII	GTNAC	2 cut(s)	139, 146
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	1 cut(s)	180
MflI	RGATCY	1 cut(s)	242
MnlI	CCTC	3 cut(s)	88, 91, 248
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	37, 68
MwoI	GCNNNNNNNGC	4 cut(s)	14, 107, 116, 221
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	123, 147
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	147
PciI	ACATGT	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	125, 235
PkrI	GCNGC	5 cut(s)	19, 44, 57, 70, 184
PscI	ACATGT	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	4 cut(s)	20, 45, 89, 110
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	242
SatI	GCNGC	5 cut(s)	18, 43, 56, 69, 183
Sau3AI	GATC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	107
SetI	ASST	5 cut(s)	13, 155, 184, 211, 259
SfaNI	GCATC	2 cut(s)	194, 211
SfcI	CTRYAG	1 cut(s)	6
SsiI	CCGC	4 cut(s)	37, 42, 50, 68
StyD4I	CCNGG	1 cut(s)	105
TaqI	TCGA	1 cut(s)	253
TauI	GCSGC	2 cut(s)	45, 71
TfiI	GAWTC	2 cut(s)	125, 235
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	17, 55, 182
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	65
XceI	RCATGY	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.