Rh4BG429800

UPF0392 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014925
Physical Location & Seq
Forward (+)
57300317 .. 57301417
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG429800.1

Sequence Viewer

Length: 1101 bp
ATGGGCGAAGGGTTTGAGTTCACTACCGAAGCCGTTACGGCAGCGCAGGAAGTTGTGAGGTGTTTGTTGCCAGAGAGCATTAGCAACGACCCGGATAAGGCTTCGGGTATTCGGGTCACAATTGGGTTCAACACTGGGCGTCCGAGAGCTCCAGTCCATGTGACTCTTCCTTCTGTGGCCACAATCCACAATTCAAAGCCCAATTTGGATGAGGCCACTAAGAAGAAGAAGCATGAGCTTTGTGTTTGCACTATGTTGTGGAACCAAGCCCCTGCGCTCAGTGAGTGGATCATGTACCATGCTTGGCTTGGAGTCGAGCGGTGGTTCATTTACGACAACAATAGTGATGATGGGATTGAAGATGTGGTTTTGGACCTCGATTCGCAGGGCTACAATGTCAGTAGGCAGTCCTGGCCATGGATCAAGACTCAGGAAGCAGGGTTTTCGCATTGTGCTTTGAAAGCGAGAGAGGAATGTACTTGGGTTGGTTTCTTTGATGTGGATGAGTTCTTCTACTTCCCTAGGGAGTTCAGGAGACGTAGAAGAGATGGCGTTCCTGGCGAAAACTGGCTCGGGAAGCTGGTTTCGAATTTTTCAAACTCTCCAACGATTGCAGAGCTGAGAACTGATTGCCATAGTTTTGGTCCGTCCGGGTTGAGATCACATCCATCACGGGGAGTGACCACAGGGTACACTTGCCGGTTGCAAAGCCCCGAAAGGCACAAGTCAATTGTCCGAACAGATTTGCTTGATGTTACATTGCTCAATGTGGTGCACCATTTCAGGCTGAGAGAGGGTTTTAGGCACCTGAACGTGCCGGAAGGCATTGCGGTGATAAACCACTACAAGTATCAGGTTTGGGAGACCTTCAGGGCCAAGTTTTACAGAAGGGTTGCTACATATGTTGTGGATTGGCAGGAAGATCAAAACCAGGGGTCGAAGGATAGAGCACCTGGGTTAGGAACAGAGGCCATTGAACCGCCGAATTGGAGGTTAAGATTCTGTGAGGTTTGGGACACTGGCCTTAAAGACTTTGTTTTGGCTTACTTTGCTGATCATTCGACTGGGTCACTGCCATGGGAGAGGGCTCAACATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

366

Amino Acids

42.12

Weight (kDa)

6.4

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_92 PF01697 77 - 310 7.6e-37 Glycosyltransferase family 92
Glyco_tranf_2_4 PF13704 88 - 175 5e-13 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27200
fragaria_vesca FvH4_4g35330
malus_domestica MD16G1083500.v1.1
prunus_persica Prupe.1G262500_v2.0.a1
pyrus_communis pycom13g07280 pycom16g07240
rosa_chinensis RchiOBHm_Chr4g0444941
rosa_laevigata RLG00000005785
rosa_multiflora Rmu_sc0011561.1_g000002 Rmu_sc0038487.1_g000001
rosa_roxburghii Rroxscaffold_5G00385430
rosa_rugosa Rorug04G0356500
rosa_samantha Rh4BG429800 Rh4CG444700 Rh4DG425900
rosa_wichuraiana Rw4G035840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 804
AccBSI CCGCTC 1 cut(s) 319
AciI CCGC 3 cut(s) 319, 830, 980
AclWI GGATC 2 cut(s) 296, 428
AcoI YGGCCR 2 cut(s) 177, 413
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 1 cut(s) 853
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 3 cut(s) 296, 478, 692
AfiI CCNNNNNNNGG 4 cut(s) 97, 417, 674, 959
AgsI TTSAA 6 cut(s) 130, 195, 359, 460, 597, 977
AjnI CCWGG 4 cut(s) 410, 556, 930, 952
AluBI AGCT 4 cut(s) 149, 238, 580, 619
AluI AGCT 4 cut(s) 149, 238, 580, 619
Alw21I GWGCWC 3 cut(s) 151, 777, 952
Alw26I GTCTC 2 cut(s) 529, 857
Alw44I GTGCAC 1 cut(s) 773
AlwI GGATC 2 cut(s) 296, 428
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 6 cut(s) 177, 213, 413, 873, 969, 1021
ApaLI GTGCAC 1 cut(s) 773
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 589
AspA2I CCTAGG 1 cut(s) 521
AspLEI GCGC 2 cut(s) 46, 277
AspS9I GGNCC 3 cut(s) 373, 644, 873
AsuC2I CCSGG 2 cut(s) 92, 652
AsuHPI GGTGA 1 cut(s) 844
AsuII TTCGAA 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 2 cut(s) 373, 644
AvrII CCTAGG 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 777
BalI TGGCCA 2 cut(s) 179, 415
BanI GGYRCC 1 cut(s) 804
BanII GRGCYC 2 cut(s) 151, 1090
BarI GAAGNNNNNNTAC 2 cut(s) 880, 912
Bbv12I GWGCWC 3 cut(s) 151, 777, 952
BbvI GCAGC 1 cut(s) 53
BccI CCATC 3 cut(s) 344, 542, 676
BceAI ACGGC 2 cut(s) 17, 54
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BciT130I CCWGG 4 cut(s) 412, 558, 932, 954
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 2 cut(s) 92, 652
BcoDI GTCTC 2 cut(s) 529, 857
BfaI CTAG 1 cut(s) 522
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 1 cut(s) 42
BlnI CCTAGG 1 cut(s) 521
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 6 cut(s) 92, 412, 558, 652, 932, 954
Bme18I GGWCC 2 cut(s) 373, 644
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 3 cut(s) 373, 644, 873
BmiI GGNNCC 2 cut(s) 263, 806
BmrFI CCNGG 6 cut(s) 92, 412, 558, 652, 932, 954
BmrI ACTGGG 2 cut(s) 144, 1074
BmuI ACTGGG 2 cut(s) 144, 1074
BpmI CTGGAG 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 587
BpuMI CCSGG 2 cut(s) 92, 652
BsaHI GRCGYC 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 5 cut(s) 416, 521, 931, 953, 1076
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 417, 674, 959
Bse118I RCCGGY 1 cut(s) 699
Bse1I ACTGG 5 cut(s) 139, 152, 572, 1024, 1069
Bse3DI GCAATG 2 cut(s) 758, 825
BseBI CCWGG 4 cut(s) 412, 558, 932, 954
BseDI CCNNGG 5 cut(s) 416, 521, 931, 953, 1076
BseGI GGATG 3 cut(s) 214, 508, 664
BseLI CCNNNNNNNGG 4 cut(s) 97, 417, 674, 959
BseMI GCAATG 2 cut(s) 758, 825
BseMII CTCAG 4 cut(s) 292, 443, 611, 779
BseNI ACTGG 5 cut(s) 139, 152, 572, 1024, 1069
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 6 cut(s) 179, 215, 415, 875, 971, 1023
BshNI GGYRCC 1 cut(s) 804
BsiHKAI GWGCWC 3 cut(s) 151, 777, 952
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 4 cut(s) 92, 651, 700, 818
BslFI GGGAC 1 cut(s) 1028
BslI CCNNNNNNNGG 4 cut(s) 97, 417, 674, 959
BsmAI GTCTC 2 cut(s) 529, 857
BsmBI CGTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 1028
BsnI GGCC 6 cut(s) 179, 215, 415, 875, 971, 1023
Bso31I GGTCTC 1 cut(s) 857
BsoBI CYCGRG 1 cut(s) 572
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 4 cut(s) 151, 777, 952, 1090
Bsp143I GATC 5 cut(s) 288, 420, 659, 922, 1054
Bsp19I CCATGG 2 cut(s) 416, 1076
BspACI CCGC 3 cut(s) 319, 830, 980
BspANI GGCC 6 cut(s) 179, 215, 415, 875, 971, 1023
BspCNI CTCAG 4 cut(s) 291, 442, 612, 780
BspLI GGNNCC 2 cut(s) 263, 806
BspPI GGATC 2 cut(s) 296, 428
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 804
BspTNI GGTCTC 1 cut(s) 857
BsrBI CCGCTC 1 cut(s) 319
BsrDI GCAATG 2 cut(s) 758, 825
BsrFI RCCGGY 1 cut(s) 699
BsrI ACTGG 5 cut(s) 139, 152, 572, 1024, 1069
BssAI RCCGGY 1 cut(s) 699
BssECI CCNNGG 5 cut(s) 416, 521, 931, 953, 1076
BssMI GATC 5 cut(s) 288, 420, 659, 922, 1054
BssNI GRCGYC 1 cut(s) 139
BssT1I CCWWGG 3 cut(s) 416, 521, 1076
Bst2UI CCWGG 4 cut(s) 412, 558, 932, 954
Bst6I CTCTTC 2 cut(s) 171, 538
BstACI GRCGYC 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 587
BstDEI CTNAG 5 cut(s) 219, 278, 429, 620, 788
BstDSI CCRYGG 2 cut(s) 416, 1076
BstENI CCTNNNNNAGG 1 cut(s) 957
BstF5I GGATG 3 cut(s) 214, 508, 664
BstHHI GCGC 2 cut(s) 46, 277
BstKTI GATC 5 cut(s) 291, 423, 662, 925, 1057
BstMAI GTCTC 2 cut(s) 529, 857
BstMBI GATC 5 cut(s) 288, 420, 659, 922, 1054
BstMWI GCNNNNNNNGC 6 cut(s) 38, 412, 461, 558, 577, 1049
BstNI CCWGG 4 cut(s) 412, 558, 932, 954
BstSCI CCNGG 6 cut(s) 90, 410, 556, 650, 930, 952
BstSLI GKGCMC 1 cut(s) 777
BstV1I GCAGC 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 641
BsuRI GGCC 6 cut(s) 179, 215, 415, 875, 971, 1023
BtgI CCRYGG 2 cut(s) 416, 1076
BtsCI GGATG 3 cut(s) 214, 508, 664
BtsI GCAGTG 1 cut(s) 1070
BtsIMutI CAGTG 4 cut(s) 132, 286, 1017, 1070
CfoI GCGC 2 cut(s) 46, 277
Cfr10I RCCGGY 1 cut(s) 699
Cfr13I GGNCC 3 cut(s) 373, 644, 873
CseI GACGC 1 cut(s) 128
Csp6I GTAC 3 cut(s) 295, 477, 691
CviAII CATG 6 cut(s) 158, 233, 292, 299, 417, 1077
CviQI GTAC 3 cut(s) 295, 477, 691
DdeI CTNAG 5 cut(s) 219, 278, 429, 620, 788
DpnI GATC 5 cut(s) 290, 422, 661, 924, 1056
DpnII GATC 5 cut(s) 288, 420, 659, 922, 1054
EaeI YGGCCR 2 cut(s) 177, 413
Eam1104I CTCTTC 2 cut(s) 171, 538
EarI CTCTTC 2 cut(s) 171, 538
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 3 cut(s) 416, 521, 1076
Eco24I GRGCYC 2 cut(s) 151, 1090
Eco31I GGTCTC 1 cut(s) 857
Eco47I GGWCC 2 cut(s) 373, 644
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 853
Eco88I CYCGRG 1 cut(s) 572
EcoICRI GAGCTC 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 957
EcoRII CCWGG 4 cut(s) 410, 556, 930, 952
EcoT14I CCWWGG 3 cut(s) 416, 521, 1076
EcoT38I GRGCYC 2 cut(s) 151, 1090
ErhI CCWWGG 3 cut(s) 416, 521, 1076
Esp3I CGTCTC 1 cut(s) 529
FaeI CATG 6 cut(s) 161, 236, 295, 302, 420, 1080
FaqI GGGAC 1 cut(s) 1028
FatI CATG 6 cut(s) 157, 232, 291, 298, 416, 1076
FauNDI CATATG 1 cut(s) 901
FbaI TGATCA 1 cut(s) 1054
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 3 cut(s) 221, 515, 651
FriOI GRGCYC 2 cut(s) 151, 1090
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 522
GlaI GCGC 2 cut(s) 45, 276
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 6 cut(s) 179, 215, 415, 875, 971, 1023
HapII CCGG 4 cut(s) 92, 651, 700, 818
HgaI GACGC 1 cut(s) 128
HhaI GCGC 2 cut(s) 46, 277
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 6 cut(s) 161, 236, 295, 302, 420, 1080
Hin6I GCGC 2 cut(s) 44, 275
HinP1I GCGC 2 cut(s) 44, 275
HinfI GANTC 5 cut(s) 163, 312, 380, 427, 999
HpaII CCGG 4 cut(s) 92, 651, 700, 818
HphI GGTGA 1 cut(s) 844
Hpy166II GTNNAC 3 cut(s) 21, 693, 775
Hpy188I TCNGA 2 cut(s) 144, 737
Hpy188III TCNNGA 4 cut(s) 424, 431, 532, 574
Hpy8I GTNNAC 3 cut(s) 21, 693, 775
HpyAV CCTTC 5 cut(s) 180, 815, 877, 882, 934
HpyCH4IV ACGT 2 cut(s) 538, 813
HpyCH4V TGCA 4 cut(s) 249, 614, 706, 775
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 412, 461, 558, 577, 1049
HpyF3I CTNAG 5 cut(s) 219, 278, 429, 620, 788
HpySE526I ACGT 2 cut(s) 538, 813
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 6 cut(s) 161, 236, 295, 302, 420, 1080
HspAI GCGC 2 cut(s) 44, 275
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 5 cut(s) 288, 420, 659, 922, 1054
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 1 cut(s) 53
MaeI CTAG 1 cut(s) 522
MaeII ACGT 2 cut(s) 538, 813
MaeIII GTNAC 6 cut(s) 34, 115, 160, 679, 754, 1068
MalI GATC 5 cut(s) 290, 422, 661, 924, 1056
MbiI CCGCTC 1 cut(s) 319
MboI GATC 5 cut(s) 288, 420, 659, 922, 1054
MboII GAAGA 7 cut(s) 158, 235, 238, 371, 502, 555, 932
MfeI CAATTG 2 cut(s) 120, 729
MhlI GDGCHC 4 cut(s) 151, 777, 952, 1090
MlsI TGGCCA 2 cut(s) 179, 415
MluCI AATT 6 cut(s) 120, 190, 202, 589, 729, 985
MluNI TGGCCA 2 cut(s) 179, 415
MlyI GAGTC 3 cut(s) 157, 321, 421
MmeI TCCRAC 1 cut(s) 629
MnlI CCTC 9 cut(s) 51, 205, 386, 463, 787, 961, 984, 1000, 1077
Mox20I TGGCCA 2 cut(s) 179, 415
MscI TGGCCA 2 cut(s) 179, 415
MseI TTAA 2 cut(s) 995, 1026
MslI CAYNNNNRTG 2 cut(s) 830, 1075
Msp20I TGGCCA 2 cut(s) 179, 415
MspI CCGG 4 cut(s) 92, 651, 700, 818
MspR9I CCNGG 6 cut(s) 92, 412, 558, 652, 932, 954
MunI CAATTG 2 cut(s) 120, 729
MvaI CCWGG 4 cut(s) 412, 558, 932, 954
MwoI GCNNNNNNNGC 6 cut(s) 38, 412, 461, 558, 577, 1049
NciI CCSGG 2 cut(s) 92, 652
NcoI CCATGG 2 cut(s) 416, 1076
NdeI CATATG 1 cut(s) 901
NdeII GATC 5 cut(s) 288, 420, 659, 922, 1054
NlaIII CATG 6 cut(s) 161, 236, 295, 302, 420, 1080
NlaIV GGNNCC 2 cut(s) 263, 806
NmuCI GTSAC 4 cut(s) 115, 160, 679, 1068
NspV TTCGAA 1 cut(s) 587
PfeI GAWTC 2 cut(s) 380, 999
PflFI GACNNNGTC 1 cut(s) 1066
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 3 cut(s) 157, 320, 421
PpsI GAGTC 3 cut(s) 157, 320, 421
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 4 cut(s) 410, 556, 930, 952
PspGI CCWGG 4 cut(s) 410, 556, 930, 952
PspN4I GGNNCC 2 cut(s) 263, 806
PspPI GGNCC 3 cut(s) 373, 644, 873
PsyI GACNNNGTC 1 cut(s) 1066
RsaI GTAC 3 cut(s) 296, 478, 692
RsaNI GTAC 3 cut(s) 295, 477, 691
RseI CAYNNNNRTG 2 cut(s) 830, 1075
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 995, 1026
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 5 cut(s) 288, 420, 659, 922, 1054
Sau96I GGNCC 3 cut(s) 373, 644, 873
SchI GAGTC 3 cut(s) 157, 321, 421
ScrFI CCNGG 6 cut(s) 92, 412, 558, 652, 932, 954
SduI GDGCHC 4 cut(s) 151, 777, 952, 1090
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 2 cut(s) 373, 644
SmiMI CAYNNNNRTG 2 cut(s) 830, 1075
Sse9I AATT 6 cut(s) 120, 190, 202, 589, 729, 985
SsiI CCGC 3 cut(s) 319, 830, 980
SspMI CTAG 1 cut(s) 522
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 6 cut(s) 90, 410, 556, 650, 930, 952
StyI CCWWGG 3 cut(s) 416, 521, 1076
TaiI ACGT 2 cut(s) 541, 816
TaqI TCGA 5 cut(s) 315, 378, 587, 938, 1061
TasI AATT 6 cut(s) 120, 190, 202, 589, 729, 985
TatI WGTACW 1 cut(s) 476
TfiI GAWTC 2 cut(s) 380, 999
Tru1I TTAA 2 cut(s) 995, 1026
Tru9I TTAA 2 cut(s) 995, 1026
TscAI CASTG 4 cut(s) 139, 286, 1024, 1077
TseFI GTSAC 4 cut(s) 115, 160, 679, 1068
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 4 cut(s) 115, 160, 679, 1068
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 4 cut(s) 139, 286, 1024, 1077
Tth111I GACNNNGTC 1 cut(s) 1066
VneI GTGCAC 1 cut(s) 773
VpaK11BI GGWCC 2 cut(s) 373, 644
XagI CCTNNNNNAGG 1 cut(s) 957
XapI RAATTY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmaJI CCTAGG 1 cut(s) 521
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.