Prupe.1G272000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015491
Physical Location & Seq
Forward (+)
27889890 .. 27891371
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G272000.1

Sequence Viewer

Length: 582 bp
ATGGCTATGGCTGACCAAACACCTTCAAAGCGCCAAAGGGAAGAAACCCTAGCAGACGACTGCGAGGACCCTAAGCGCCACAAGTCTTACAACCACATACTCTCTCTTCTCGATGAAGAAGAAGAGGAACCCTCACAAGACTTGTCCTCCATTATCACAACCCTTCAGCAAGAGCTCTCCTCTGACTCTGCCTCTGAGCCTCTCACTGCATTTCCAAACTCCGACGCAGACCAAGAAATTAACCAGTCCTCAGATTCCACAGCTGCTACAGCCTTTGAAGGATATGCCTCCTCTTCCTCTGGCTCTTCTTCACCTTCTTCTTCGAATACAAACTCAGGGTTTTTGAAGGAGGGGGATGAGCAAGAAGATGACGGCGAGAGGGTCATGAGACACCTTCTAGAAGCTTCTGATGATGAGCTGGGGATTCCCCAGAGAGAGGAAGTTAGTGGGTTCGATGATGCAGAAGATGCTGGGTTTAACGGGCTGATGATGGATGGGTTTTCTTTTGGTGATGGGTTATGGGAGCTTCAAGATGAAGCTGCCAACTACTACACCCTGGTGCAATCTGAACTGTTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.16

Weight (kDa)

4.05

Isoelectric Point (pI)

72.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26920 AT1G69760
malus_domestica MD13G1074000.v1.1 MD16G1075200.v1.1
prunus_persica Prupe.1G272000_v2.0.a1
pyrus_communis pycom16g06530
rosa_chinensis RchiOBHm_Chr4g0440081
rosa_laevigata RLG00000006207
rosa_multiflora Rmu_sc0001685.1_g000006
rosa_roxburghii Rroxscaffold_5G00381020
rosa_rugosa Rorug04G0324200
rosa_samantha Rh4AG374900 Rh4BG387200 Rh4CG401700 Rh4DG381500
rosa_wichuraiana Rw4G032070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 4 cut(s) 27, 278, 346, 530
AjnI CCWGG 1 cut(s) 555
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 6 cut(s) 175, 263, 404, 418, 526, 539
AluI AGCT 6 cut(s) 175, 263, 404, 418, 526, 539
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 263, 539
AspLEI GCGC 2 cut(s) 33, 78
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 303, 521
AsuII TTCGAA 1 cut(s) 323
AvaII GGWCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 250, 526
BccI CCATC 3 cut(s) 484, 488, 506
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 557
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 2 cut(s) 50, 398
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 2 cut(s) 34, 79
BisI GCNGC 2 cut(s) 264, 540
BlsI GCNGC 2 cut(s) 265, 541
Bme1390I CCNGG 1 cut(s) 557
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 69, 129
BmrFI CCNGG 1 cut(s) 557
BmsI GCATC 2 cut(s) 448, 457
BplI GAGNNNNNCTC 4 cut(s) 116, 148, 164, 196
Bpu10I CCTNAGC 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 2 cut(s) 361, 499
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 3 cut(s) 186, 264, 348
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 2 cut(s) 169, 280
BseXI GCAGC 2 cut(s) 250, 526
BseYI CCCAGC 2 cut(s) 418, 470
BsiHKAI GWGCWC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 382
Bsp119I TTCGAA 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 177
BspCNI CTCAG 3 cut(s) 187, 263, 347
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 69, 129
BspQI GCTCTTC 1 cut(s) 310
BspT104I TTCGAA 1 cut(s) 323
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 1 cut(s) 573
Bst6I CTCTTC 4 cut(s) 111, 117, 298, 310
BstAPI GCANNNNNTGC 1 cut(s) 467
BstBI TTCGAA 1 cut(s) 323
BstDEI CTNAG 4 cut(s) 72, 195, 250, 334
BstF5I GGATG 2 cut(s) 361, 499
BstH2I RGCGCY 2 cut(s) 34, 79
BstHHI GCGC 2 cut(s) 33, 78
BstMAI GTCTC 1 cut(s) 382
BstMWI GCNNNNNNNGC 2 cut(s) 269, 467
BstNI CCWGG 1 cut(s) 557
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 250, 526
BtsCI GGATG 2 cut(s) 361, 499
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
CciI TCATGA 1 cut(s) 384
CfoI GCGC 2 cut(s) 33, 78
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 1 cut(s) 233
CviAII CATG 2 cut(s) 385, 577
DdeI CTNAG 4 cut(s) 72, 195, 250, 334
Eam1104I CTCTTC 4 cut(s) 111, 117, 298, 310
EarI CTCTTC 4 cut(s) 111, 117, 298, 310
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 2 cut(s) 388, 580
FaiI YATR 6 cut(s) 8, 98, 285, 386, 520, 578
FatI CATG 2 cut(s) 384, 576
Fnu4HI GCNGC 2 cut(s) 264, 540
FokI GGATG 2 cut(s) 368, 506
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 264, 540
FspBI CTAG 2 cut(s) 50, 398
GlaI GCGC 2 cut(s) 32, 77
GluI GCNGC 2 cut(s) 264, 540
GsaI CCCAGC 2 cut(s) 422, 474
HaeII RGCGCY 2 cut(s) 34, 79
HgaI GACGC 1 cut(s) 233
HhaI GCGC 2 cut(s) 33, 78
Hin1II CATG 2 cut(s) 388, 580
Hin6I GCGC 2 cut(s) 31, 76
HinP1I GCGC 2 cut(s) 31, 76
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 3 cut(s) 185, 254, 424
HphI GGTGA 2 cut(s) 303, 521
Hpy188I TCNGA 6 cut(s) 184, 196, 223, 253, 409, 568
Hpy188III TCNNGA 4 cut(s) 110, 385, 398, 530
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 6 cut(s) 33, 173, 272, 324, 340, 404
HpyCH4III ACNGT 1 cut(s) 573
HpyCH4V TGCA 3 cut(s) 209, 461, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 467
HpyF3I CTNAG 4 cut(s) 72, 195, 250, 334
Hsp92II CATG 2 cut(s) 388, 580
HspAI GCGC 2 cut(s) 31, 76
LguI GCTCTTC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 8 cut(s) 257, 285, 321, 404, 443, 456, 542, 569
Lsp1109I GCAGC 2 cut(s) 250, 526
LweI GCATC 2 cut(s) 448, 457
MaeI CTAG 2 cut(s) 50, 398
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 237
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 246
MseI TTAA 2 cut(s) 240, 477
MslI CAYNNNNRTG 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 269, 467
NlaIII CATG 2 cut(s) 388, 580
NlaIV GGNNCC 2 cut(s) 69, 129
NspV TTCGAA 1 cut(s) 323
OliI CACNNNNGTG 1 cut(s) 557
PagI TCATGA 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 254, 424
PkrI GCNGC 2 cut(s) 265, 541
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 555
PspFI CCCAGC 2 cut(s) 418, 470
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 2 cut(s) 69, 129
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 557
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 240, 477
SatI GCNGC 2 cut(s) 264, 540
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 1 cut(s) 177
SetI ASST 9 cut(s) 25, 177, 265, 316, 396, 406, 420, 528, 541
SfaNI GCATC 2 cut(s) 448, 457
SfcI CTRYAG 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 323
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 557
Sse9I AATT 1 cut(s) 237
SspMI CTAG 2 cut(s) 50, 398
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 555
TaaI ACNGT 1 cut(s) 573
TaqI TCGA 3 cut(s) 111, 323, 453
TasI AATT 1 cut(s) 237
TfiI GAWTC 2 cut(s) 254, 424
Tru1I TTAA 2 cut(s) 240, 477
Tru9I TTAA 2 cut(s) 240, 477
TscAI CASTG 1 cut(s) 211
TseI GCWGC 2 cut(s) 263, 539
TspDTI ATGAA 3 cut(s) 129, 549, 565
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 67
XbaI TCTAGA 1 cut(s) 397
XspI CTAG 2 cut(s) 50, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.