Rh4CG401700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015491
Physical Location & Seq
Reverse (-)
64998558 .. 65001018
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG401700.1

Sequence Viewer

Length: 564 bp
ATGGCCATGGTTGAAACACAGTCCTCAAAGCGCCAAAGAGATGAAGAACAAGAAACCCAGATGTTAGAGCAGGATCCTAAGCGCCAAAAGTCTTACAACCACATACTCTCTCTTCTTGATGAAGATGAAGAGGAACCCACCCAGGATTTGAACTCTCTCATCACAACCTTACAGCAAGAGCTCTCCTCCGACTCCGACCTTGTTTTGAATCCGGACCACGTTGGTCACCAAACCATAGCAGATGCTTTGGATGCTTCCGAAGGGTACAACTCCTCTTCCTCCGGCTCTTCCTCACCTTCTTCTTCCTCGGCACTGTTCTTGAAGGAGGGTGACGAGCAGGAGGACGAGAGTAGTGTCGAGAGGGTTATGAGACACCTTCTAGAAGCTTCCGACGACGAGCTAGGGATTCCGAATCGAGAGGCTGGTAATGGTGGGTTTGAGGATGCGGAGGAGGCGGTGTTTAATTTTGGGGATAATGGGCTTTCACTTTGTGATGGGTTGTGGGAGCTTGAAGATGAAGCTGCCAACTACTATGCCCTGGTGCAATCTGAACTGTTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.73

Weight (kDa)

4.05

Isoelectric Point (pI)

64.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26920 AT1G69760
malus_domestica MD13G1074000.v1.1 MD16G1075200.v1.1
prunus_persica Prupe.1G272000_v2.0.a1
pyrus_communis pycom16g06530
rosa_chinensis RchiOBHm_Chr4g0440081
rosa_laevigata RLG00000006207
rosa_multiflora Rmu_sc0001685.1_g000006
rosa_roxburghii Rroxscaffold_5G00381020
rosa_rugosa Rorug04G0324200
rosa_samantha Rh4AG374900 Rh4BG387200 Rh4CG401700 Rh4DG381500
rosa_wichuraiana Rw4G032070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 2 cut(s) 446, 455
AclWI GGATC 2 cut(s) 68, 81
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 1 cut(s) 266
AgsI TTSAA 5 cut(s) 14, 151, 208, 322, 512
AjnI CCWGG 2 cut(s) 141, 537
AluBI AGCT 5 cut(s) 181, 386, 400, 508, 521
AluI AGCT 5 cut(s) 181, 386, 400, 508, 521
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 2 cut(s) 68, 81
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 521
AspLEI GCGC 2 cut(s) 33, 84
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 3 cut(s) 218, 285, 341
AvaII GGWCC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 508
BccI CCATC 1 cut(s) 488
BciT130I CCWGG 2 cut(s) 143, 539
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 2 cut(s) 380, 401
BfoI RGCGCY 2 cut(s) 34, 85
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 2 cut(s) 143, 539
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 75, 135
BmrFI CCNGG 2 cut(s) 143, 539
BmsI GCATC 3 cut(s) 232, 241, 433
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 6, 141, 306, 537
BsaWI WCCGGW 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
BseAI TCCGGA 1 cut(s) 211
BseBI CCWGG 2 cut(s) 143, 539
BseDI CCNNGG 4 cut(s) 6, 141, 306, 537
BseGI GGATG 2 cut(s) 256, 448
BseRI GAGGAG 3 cut(s) 175, 262, 464
BseXI GCAGC 1 cut(s) 508
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 212, 282
BsmAI GTCTC 1 cut(s) 364
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 183
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 446, 455
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 75, 135
BspPI GGATC 2 cut(s) 68, 81
BspQI GCTCTTC 1 cut(s) 292
BssECI CCNNGG 4 cut(s) 6, 141, 306, 537
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 143, 539
Bst4CI ACNGT 3 cut(s) 21, 315, 555
Bst6I CTCTTC 4 cut(s) 117, 123, 280, 292
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 224
BstF5I GGATG 2 cut(s) 256, 448
BstH2I RGCGCY 2 cut(s) 34, 85
BstHHI GCGC 2 cut(s) 33, 84
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 251, 452
BstNI CCWGG 2 cut(s) 143, 539
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 141, 537
BstV1I GCAGC 1 cut(s) 508
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 256, 448
BtsIMutI CAGTG 1 cut(s) 311
CfoI GCGC 2 cut(s) 33, 84
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 265
CviAII CATG 2 cut(s) 7, 559
CviJI RGCY 9 cut(s) 5, 181, 285, 386, 400, 422, 481, 508, 521
CviKI_1 RGCY 9 cut(s) 5, 181, 285, 386, 400, 422, 481, 508, 521
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DraIII CACNNNGTG 1 cut(s) 491
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 117, 123, 280, 292
EarI CTCTTC 4 cut(s) 117, 123, 280, 292
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 181
Eco91I GGTNACC 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 141, 537
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 10, 562
FaiI YATR 6 cut(s) 8, 104, 236, 368, 534, 560
FatI CATG 2 cut(s) 6, 558
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 2 cut(s) 263, 455
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 2 cut(s) 380, 401
GlaI GCGC 2 cut(s) 32, 83
GluI GCNGC 1 cut(s) 522
HaeII RGCGCY 2 cut(s) 34, 85
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 212, 282
HhaI GCGC 2 cut(s) 33, 84
Hin1II CATG 2 cut(s) 10, 562
Hin6I GCGC 2 cut(s) 31, 82
HinP1I GCGC 2 cut(s) 31, 82
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 4 cut(s) 191, 208, 406, 412
HpaII CCGG 2 cut(s) 212, 282
HphI GGTGA 3 cut(s) 218, 285, 341
Hpy188I TCNGA 6 cut(s) 190, 196, 259, 391, 411, 550
Hpy188III TCNNGA 6 cut(s) 116, 212, 319, 358, 380, 416
Hpy99I CGWCG 2 cut(s) 395, 398
HpyAV CCTTC 4 cut(s) 254, 306, 316, 386
HpyCH4III ACNGT 3 cut(s) 21, 315, 555
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 452
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 2 cut(s) 10, 562
HspAI GCGC 2 cut(s) 31, 82
Kpn2I TCCGGA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 3 cut(s) 232, 241, 433
MaeI CTAG 2 cut(s) 380, 401
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 224, 329
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 9 cut(s) 56, 104, 134, 140, 267, 279, 291, 294, 524
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 463
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 3 cut(s) 213, 219, 414
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 211
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 212, 282
MspR9I CCNGG 2 cut(s) 143, 539
MvaI CCWGG 2 cut(s) 143, 539
MwoI GCNNNNNNNGC 2 cut(s) 251, 452
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 10, 562
NlaIV GGNNCC 2 cut(s) 75, 135
NmeAIII GCCGAG 1 cut(s) 287
NmuCI GTSAC 2 cut(s) 224, 329
PciSI GCTCTTC 1 cut(s) 292
PfeI GAWTC 3 cut(s) 208, 406, 412
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 141, 537
PspEI GGTNACC 1 cut(s) 224
PspGI CCWGG 2 cut(s) 141, 537
PspN4I GGNNCC 2 cut(s) 75, 135
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 143, 539
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 3 cut(s) 232, 241, 433
SinI GGWCC 1 cut(s) 214
Sse9I AATT 1 cut(s) 463
SsiI CCGC 2 cut(s) 446, 455
SspMI CTAG 2 cut(s) 380, 401
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 141, 537
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 3 cut(s) 21, 315, 555
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 357, 415
TasI AATT 1 cut(s) 463
TfiI GAWTC 3 cut(s) 208, 406, 412
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 2 cut(s) 224, 329
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 2 cut(s) 224, 329
TspDTI ATGAA 5 cut(s) 57, 135, 141, 531, 547
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 214
XbaI TCTAGA 1 cut(s) 379
XspI CTAG 2 cut(s) 380, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.