Rroxscaffold_5G00381020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015491
Physical Location & Seq
Reverse (-)
61085377 .. 61085922
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381020.1

Sequence Viewer

Length: 546 bp
ATGGCCATGGTTGAAACACAATCCTCAAAGCGCCAAAGAGATGAAGAACAAGAAACCCAGATGTTAGAGGATCCTAAGCGCCAAAAGTCTTACAACCACATACTCTCTCTTCTTGATGAAGATGAAGAGGAACCCACCCAGGATTTGAACTCTCTCATCACAACCTTCCAGCAAGAGCTCTCCTCCGACTCCGACCGTGTTTTGAATCCGGACCACGTTGGTCACCAAACCATAGCAGATGCTTTGGATGCTTCCGAAGGGTACAACTCCTCTTCCTCCGGTTCTTCCTCACCTTCTTCTTCCTCGGCACTGTTCTTGAAGGAAGGTGACGAGAGTAGTGTCGAGAGGGTTATGAGACACCTTCTAGAAGCTTCAGACGACGAGCTAGGGATTCCGAATCGAGAGGCTGGTAATGGGCTTGAGGATGCGGAGGAGGCGGTGTTTAATTTTGGGGATAATGGGCTTTCACTTTGTGATGGGTTGTGGGAGCTTGAAGATGAAGCTGCCAACTACTATGCCCTGGTGCAATCTGAACTGTTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.09

Weight (kDa)

4.05

Isoelectric Point (pI)

59.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26920 AT1G69760
malus_domestica MD13G1074000.v1.1 MD16G1075200.v1.1
prunus_persica Prupe.1G272000_v2.0.a1
pyrus_communis pycom16g06530
rosa_chinensis RchiOBHm_Chr4g0440081
rosa_laevigata RLG00000006207
rosa_multiflora Rmu_sc0001685.1_g000006
rosa_roxburghii Rroxscaffold_5G00381020
rosa_rugosa Rorug04G0324200
rosa_samantha Rh4AG374900 Rh4BG387200 Rh4CG401700 Rh4DG381500
rosa_wichuraiana Rw4G032070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 2 cut(s) 428, 437
AclWI GGATC 2 cut(s) 65, 78
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 1 cut(s) 263
AgsI TTSAA 5 cut(s) 14, 148, 205, 319, 494
AjnI CCWGG 2 cut(s) 138, 519
AluBI AGCT 5 cut(s) 178, 371, 385, 490, 503
AluI AGCT 5 cut(s) 178, 371, 385, 490, 503
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 65, 78
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 503
AspLEI GCGC 2 cut(s) 33, 81
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 215, 282, 338
AvaII GGWCC 1 cut(s) 211
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 490
BccI CCATC 1 cut(s) 470
BciT130I CCWGG 2 cut(s) 140, 521
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 2 cut(s) 365, 386
BfoI RGCGCY 2 cut(s) 34, 82
BisI GCNGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 505
Bme1390I CCNGG 2 cut(s) 140, 521
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 2 cut(s) 72, 132
BmrFI CCNGG 2 cut(s) 140, 521
BmsI GCATC 3 cut(s) 229, 238, 415
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 440
BsaJI CCNNGG 4 cut(s) 6, 138, 303, 519
BsaWI WCCGGW 2 cut(s) 208, 278
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 2 cut(s) 140, 521
BseDI CCNNGG 4 cut(s) 6, 138, 303, 519
BseGI GGATG 2 cut(s) 253, 430
BseRI GAGGAG 3 cut(s) 172, 259, 446
BseXI GCAGC 1 cut(s) 490
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 209, 279
BsmAI GTCTC 1 cut(s) 349
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 428, 437
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 72, 132
BspPI GGATC 2 cut(s) 65, 78
BssECI CCNNGG 4 cut(s) 6, 138, 303, 519
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 140, 521
Bst4CI ACNGT 3 cut(s) 197, 312, 537
Bst6I CTCTTC 3 cut(s) 114, 120, 277
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 2 cut(s) 253, 430
BstH2I RGCGCY 2 cut(s) 34, 82
BstHHI GCGC 2 cut(s) 33, 81
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 1 cut(s) 70
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 248, 434
BstNI CCWGG 2 cut(s) 140, 521
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 138, 519
BstV1I GCAGC 1 cut(s) 490
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 253, 430
BtsIMutI CAGTG 1 cut(s) 308
CfoI GCGC 2 cut(s) 33, 81
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 262
CviAII CATG 2 cut(s) 7, 541
CviJI RGCY 9 cut(s) 5, 178, 371, 385, 407, 418, 463, 490, 503
CviKI_1 RGCY 9 cut(s) 5, 178, 371, 385, 407, 418, 463, 490, 503
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DraIII CACNNNGTG 1 cut(s) 473
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 114, 120, 277
EarI CTCTTC 3 cut(s) 114, 120, 277
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 357
Eco91I GGTNACC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 138, 519
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 10, 544
FaiI YATR 6 cut(s) 8, 101, 233, 353, 516, 542
FatI CATG 2 cut(s) 6, 540
Fnu4HI GCNGC 1 cut(s) 504
FokI GGATG 2 cut(s) 260, 437
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 504
FspBI CTAG 2 cut(s) 365, 386
GlaI GCGC 2 cut(s) 32, 80
GluI GCNGC 1 cut(s) 504
HaeII RGCGCY 2 cut(s) 34, 82
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 209, 279
HhaI GCGC 2 cut(s) 33, 81
Hin1II CATG 2 cut(s) 10, 544
Hin6I GCGC 2 cut(s) 31, 79
HinP1I GCGC 2 cut(s) 31, 79
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 4 cut(s) 188, 205, 391, 397
HpaII CCGG 2 cut(s) 209, 279
HphI GGTGA 3 cut(s) 215, 282, 338
Hpy188I TCNGA 6 cut(s) 187, 193, 256, 376, 396, 532
Hpy188III TCNNGA 6 cut(s) 113, 209, 316, 343, 365, 401
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 6 cut(s) 175, 251, 303, 313, 317, 371
HpyCH4III ACNGT 3 cut(s) 197, 312, 537
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 434
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 2 cut(s) 10, 544
HspAI GCGC 2 cut(s) 31, 79
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 9 cut(s) 71, 125, 152, 182, 222, 292, 393, 506, 533
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 3 cut(s) 229, 238, 415
MaeI CTAG 2 cut(s) 365, 386
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 221, 326
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 9 cut(s) 56, 101, 131, 137, 264, 276, 288, 291, 506
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 445
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 2 cut(s) 210, 216
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 208
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 209, 279
MspR9I CCNGG 2 cut(s) 140, 521
MvaI CCWGG 2 cut(s) 140, 521
MwoI GCNNNNNNNGC 2 cut(s) 248, 434
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 10, 544
NlaIV GGNNCC 2 cut(s) 72, 132
NmeAIII GCCGAG 1 cut(s) 284
NmuCI GTSAC 2 cut(s) 221, 326
PfeI GAWTC 3 cut(s) 205, 391, 397
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 138, 519
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 2 cut(s) 138, 519
PspN4I GGNNCC 2 cut(s) 72, 132
PspPI GGNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 140, 521
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 3 cut(s) 229, 238, 415
SinI GGWCC 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 1 cut(s) 445
SsiI CCGC 2 cut(s) 428, 437
SspMI CTAG 2 cut(s) 365, 386
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 138, 519
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 3 cut(s) 197, 312, 537
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 342, 400
TasI AATT 1 cut(s) 445
TfiI GAWTC 3 cut(s) 205, 391, 397
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 2 cut(s) 221, 326
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 2 cut(s) 221, 326
TspDTI ATGAA 5 cut(s) 57, 132, 138, 513, 529
TspRI CASTG 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 211
XbaI TCTAGA 1 cut(s) 364
XspI CTAG 2 cut(s) 365, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.