Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015491

Physical Location & Seq

Genomic Coordinates Reverse (-)

4190457 .. 4191041

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTATCGCCGATCAAACTCCGGCAAAACAGCAAAGGGATGAAACCCTAACCCTCGTTGACGACAGTGTGCGTCAAGCTCCCTCTAAACGCCAAAGGGACGAAACCCTCACCCTAGCTGAGGATTCCGTTGATCTCAAGCGTCAGAAACCTTATACCGACATACTTTCTCTCCTCGACGAAGAAGAAGTAGAACCTCCGGAAGATTTGTCCTCTTTAATCACAACCCTGCAGCAAGAAATCTCACCTGAACCTCTCAACACATTCCCCAGCTCCGAAACCCTAGCTGCCGAGTCGGCTCTAGAAGGCTATGCCTCGTCTTCCTCTGGCTCTTCCACTCCTACTTCTTCCAATGCGTGTTTTTTGAAAGAGGATGAGTGCGAGAGGGTTATGAGACATCTTCTAGAAGCTTCCGACGACGAGCTTGGGATTCCGCAGAGGGAGGCTGACGGGTCCGATGAAGTGGAGGGTGATGGGTTTAAATTCGACGGTCTGGATGGGTTTTCATTTGGTGATGGGTTGTGGGAGCTTGAAGACGAAGCGGCCAACTACTATACCTTGGTGCAATCTGAACTGTTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.43

Weight (kDa)

4.05

Isoelectric Point (pI)

61.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26920 AT1G69760
malus_domestica	MD13G1074000.v1.1 MD16G1075200.v1.1
prunus_persica	Prupe.1G272000_v2.0.a1
pyrus_communis	pycom16g06530
rosa_chinensis	RchiOBHm_Chr4g0440081
rosa_laevigata	RLG00000006207
rosa_multiflora	Rmu_sc0001685.1_g000006
rosa_roxburghii	Rroxscaffold_5G00381020
rosa_rugosa	Rorug04G0324200
rosa_samantha	Rh4AG374900 Rh4BG387200 Rh4CG401700 Rh4DG381500
rosa_wichuraiana	Rw4G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	434, 542
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	367, 533
AluBI	AGCT	7 cut(s)	80, 119, 273, 287, 410, 424, 529
AluI	AGCT	7 cut(s)	80, 119, 273, 287, 410, 424, 529
Alw26I	GTCTC	1 cut(s)	388
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	2 cut(s)	232, 287
ApoI	RAATTY	1 cut(s)	482
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	4 cut(s)	103, 237, 482, 524
AvaII	GGWCC	1 cut(s)	453
BbsI	GAAGAC	2 cut(s)	312, 540
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	244, 274
BccI	CCATC	3 cut(s)	467, 491, 509
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	4 cut(s)	116, 284, 302, 404
BfmI	CTRYAG	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	233, 288, 543
BlsI	GCNGC	3 cut(s)	234, 289, 544
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	454
BpiI	GAAGAC	2 cut(s)	312, 540
Bpu10I	CCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	558
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	558
BseGI	GGATG	3 cut(s)	46, 379, 502
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	244, 274
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	23, 200
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	545
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	13, 133
BspACI	CCGC	2 cut(s)	434, 542
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	1 cut(s)	112
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	454
BspMAI	CTGCAG	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	558
BssMI	GATC	2 cut(s)	13, 133
BssT1I	CCWWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	68, 491, 576
Bst6I	CTCTTC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	120
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	46, 379, 502
BstKTI	GATC	2 cut(s)	16, 136
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	2 cut(s)	13, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	244, 274
BstV2I	GAAGAC	2 cut(s)	312, 540
BsuRI	GGCC	1 cut(s)	545
BtsCI	GGATG	3 cut(s)	46, 379, 502
BtsIMutI	CAGTG	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	453
CseI	GACGC	2 cut(s)	62, 131
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	15, 135
DpnII	GATC	2 cut(s)	13, 133
DraI	TTTAAA	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	453
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	558
FaiI	YATR	6 cut(s)	156, 164, 312, 392, 555, 581
FaqI	GGGAC	1 cut(s)	113
Fnu4HI	GCNGC	3 cut(s)	233, 288, 543
FokI	GGATG	3 cut(s)	53, 386, 509
Fsp4HI	GCNGC	3 cut(s)	233, 288, 543
FspBI	CTAG	4 cut(s)	116, 284, 302, 404
GluI	GCNGC	3 cut(s)	233, 288, 543
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	2 cut(s)	23, 200
HgaI	GACGC	2 cut(s)	62, 131
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	3 cut(s)	125, 293, 430
HpaII	CCGG	2 cut(s)	23, 200
HphI	GGTGA	4 cut(s)	103, 237, 482, 524
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	147, 277, 415, 457, 571
Hpy188III	TCNNGA	4 cut(s)	200, 302, 404, 494
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	4 cut(s)	182, 419, 422, 491
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	3 cut(s)	68, 491, 576
HpyCH4V	TGCA	2 cut(s)	232, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	120
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	13, 133
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	3 cut(s)	85, 278, 526
LpnPI	CCDG	7 cut(s)	36, 213, 242, 261, 283, 312, 479
Lsp1109I	GCAGC	2 cut(s)	244, 274
MaeI	CTAG	4 cut(s)	116, 284, 302, 404
MalI	GATC	2 cut(s)	15, 135
MboI	GATC	2 cut(s)	13, 133
MboII	GAAGA	8 cut(s)	194, 197, 215, 312, 324, 339, 392, 545
MluCI	AATT	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	438
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	2 cut(s)	218, 480
MspI	CCGG	2 cut(s)	23, 200
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	2 cut(s)	13, 133
NlaIV	GGNNCC	1 cut(s)	454
NmeAIII	GCCGAG	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	125, 430
PkrI	GCNGC	3 cut(s)	234, 289, 544
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	218, 480
SatI	GCNGC	3 cut(s)	233, 288, 543
Sau3AI	GATC	2 cut(s)	13, 133
Sau96I	GGNCC	1 cut(s)	453
SchI	GAGTC	1 cut(s)	302
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	482
SsiI	CCGC	2 cut(s)	434, 542
SspMI	CTAG	4 cut(s)	116, 284, 302, 404
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	3 cut(s)	68, 491, 576
TaqI	TCGA	2 cut(s)	177, 486
TasI	AATT	1 cut(s)	482
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	125, 430
Tru1I	TTAA	2 cut(s)	218, 480
Tru9I	TTAA	2 cut(s)	218, 480
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	232, 287
TspDTI	ATGAA	3 cut(s)	57, 474, 495
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	453
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	482
XbaI	TCTAGA	2 cut(s)	301, 403
XspI	CTAG	4 cut(s)	116, 284, 302, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.