Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010355

Physical Location & Seq

Genomic Coordinates Reverse (-)

28440967 .. 28443089

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTGTTTTTGGTGATCTGAGGGTCTCAGCAACACTGGCTTCTCACACAACGCACTCTCTCCGGAGCTCTTTGCCCAATTCAAAGGTAGACTTTGCTAGCTTTTCAAATAGAGGATCTAGCATTTCTGACATTGCACTGAAGTGGCCCAGTATGTCATTTGATAGACGCAGTATTCGTCAACATTCCAAGCGATTGAGTGGAGATTTTCAACTCTCATCGAAGTCAAGCAGCCAAGATTCCGAGAGCTTCCTCCTTAATGCCATCAACATGAGTTTCTTGGACCGTTTAAACTTGGCTTGGAAAATAATGTTCCCGTCTCCAACAACTAGAAGGAGCTCTAATGCAAATATTGCCAAGCAGCGCTTGAAGATGATCCTCTTCTCTGACCGATGTGCAGTTAGTGATGAGGCTAAAAGGATGATTGTCAACAACATTGTGCATGCTCTATCAGATTTTGTTGAGATAGAATCACGAGACAAAGTTCAGCTGAGTGTGTCTGCTGATACAGATGTGGGAACCATTTACTCCGTCACGGTGCCTGTAAGACGGGTTAAGCCAGAATATCAGATTGGAGACGAGACTGGAACCATAACAAATATTGAGTACAAAGATACTGGAGAAAGTTCTGGTTCTGTTGATGTCAAGTTTGATTTCTTCATTCCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0019899 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051117 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MinE

Protein Analysis

224

Amino Acids

24.87

Weight (kDa)

8.69

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69390
fragaria_vesca	FvH4_4g30590
malus_domestica	MD16G1066100.v1.1
prunus_persica	Prupe.1G281100_v2.0.a1
pyrus_communis	pycom13g05910 pycom16g05760
rosa_chinensis	RchiOBHm_Chr4g0438981 RchiOBHm_Chr5g0013451
rosa_laevigata	RLG00000006313
rosa_multiflora	Rmu_sc0005887.1_g000007 Rmu_sc0018732.1_g000001 Rmu_sc0023005.1_g000005 Rmu_sc0023254.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380000
rosa_rugosa	Rorug04G0314900
rosa_samantha	Rh4AG365500 Rh4BG376700 Rh4CG390800 Rh4DG371400
rosa_wichuraiana	Rw0G007380 Rw0G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	63
AclWI	GGATC	2 cut(s)	124, 370
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	608
AfeI	AGCGCT	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	84, 108, 212, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AleI	CACNNNNGTG	1 cut(s)	142
AluBI	AGCT	5 cut(s)	69, 102, 249, 339, 490
AluI	AGCT	5 cut(s)	69, 102, 249, 339, 490
Alw21I	GWGCWC	2 cut(s)	71, 341
Alw26I	GTCTC	5 cut(s)	31, 324, 471, 570, 575
AlwI	GGATC	2 cut(s)	124, 370
Aor13HI	TCCGGA	1 cut(s)	63
Aor51HI	AGCGCT	1 cut(s)	365
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	231, 361
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	2 cut(s)	147, 283
AsuHPI	GGTGA	1 cut(s)	26
AsuNHI	GCTAGC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanI	GGYRCC	1 cut(s)	538
BanII	GRGCYC	2 cut(s)	71, 341
BauI	CACGAG	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	71, 341
BbvI	GCAGC	2 cut(s)	243, 373
BccI	CCATC	1 cut(s)	272
BcoDI	GTCTC	5 cut(s)	31, 324, 471, 570, 575
BfaI	CTAG	3 cut(s)	99, 120, 330
BfoI	RGCGCY	1 cut(s)	367
BisI	GCNGC	2 cut(s)	232, 362
BlsI	GCNGC	2 cut(s)	233, 363
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	147, 283
BmiI	GGNNCC	3 cut(s)	520, 540, 589
BmrI	ACTGGG	1 cut(s)	144
BmtI	GCTAGC	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	63
Bse1I	ACTGG	4 cut(s)	42, 150, 589, 622
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	63
BseGI	GGATG	1 cut(s)	426
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	3 cut(s)	11, 42, 482
BseNI	ACTGG	4 cut(s)	42, 150, 589, 622
BseXI	GCAGC	2 cut(s)	243, 373
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	538
BsiHKAI	GWGCWC	2 cut(s)	71, 341
BsiSI	CCGG	1 cut(s)	64
BsmAI	GTCTC	5 cut(s)	31, 324, 471, 570, 575
BsmBI	CGTCTC	2 cut(s)	324, 570
BsnI	GGCC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	71, 341
Bsp13I	TCCGGA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	16, 116, 375
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	3 cut(s)	12, 41, 483
BspEI	TCCGGA	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	520, 540, 589
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	124, 370
BspT107I	GGYRCC	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	4 cut(s)	42, 150, 589, 622
BssMI	GATC	3 cut(s)	16, 116, 375
BssSI	CACGAG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	287, 538
Bst6I	CTCTTC	1 cut(s)	386
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	100, 444
BstDEI	CTNAG	3 cut(s)	20, 28, 491
BstF5I	GGATG	1 cut(s)	426
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	3 cut(s)	19, 119, 378
BstMAI	GTCTC	5 cut(s)	31, 324, 471, 570, 575
BstMBI	GATC	3 cut(s)	16, 116, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 353
BstNSI	RCATGY	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	243, 373
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	35, 137
Cac8I	GCNNGC	2 cut(s)	100, 444
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	147, 283
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	2 cut(s)	271, 443
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	3 cut(s)	20, 28, 491
DpnI	GATC	3 cut(s)	18, 118, 377
DpnII	GATC	3 cut(s)	16, 116, 375
DraI	TTTAAA	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Ecl136II	GAGCTC	2 cut(s)	69, 339
Eco24I	GRGCYC	2 cut(s)	71, 341
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	365
Eco53kI	GAGCTC	2 cut(s)	69, 339
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	2 cut(s)	69, 339
EcoT38I	GRGCYC	2 cut(s)	71, 341
Esp3I	CGTCTC	2 cut(s)	324, 570
FaeI	CATG	2 cut(s)	274, 446
FaiI	YATR	4 cut(s)	155, 272, 444, 593
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 350, 382
FatI	CATG	2 cut(s)	270, 442
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	232, 362
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	2 cut(s)	71, 341
Fsp4HI	GCNGC	2 cut(s)	232, 362
FspBI	CTAG	3 cut(s)	99, 120, 330
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	2 cut(s)	232, 362
GsuI	CTGGAG	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	274, 446
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	2 cut(s)	182, 430
HindII	GTYRAC	2 cut(s)	182, 430
HinfI	GANTC	2 cut(s)	239, 470
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	3 cut(s)	91, 182, 430
Hpy188I	TCNGA	6 cut(s)	21, 130, 244, 388, 454, 570
Hpy188III	TCNNGA	3 cut(s)	64, 474, 665
Hpy8I	GTNNAC	3 cut(s)	91, 182, 430
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	2 cut(s)	287, 538
HpyCH4V	TGCA	4 cut(s)	137, 347, 398, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 353
HpyF3I	CTNAG	3 cut(s)	20, 28, 491
Hsp92II	CATG	2 cut(s)	274, 446
HspAI	GCGC	1 cut(s)	364
Kpn2I	TCCGGA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	16, 116, 375
LmnI	GCTCC	2 cut(s)	66, 336
LpnPI	CCDG	8 cut(s)	23, 77, 163, 555, 570, 573, 603, 615
Lsp1109I	GCAGC	2 cut(s)	243, 373
MaeI	CTAG	3 cut(s)	99, 120, 330
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	3 cut(s)	18, 118, 377
MboI	GATC	3 cut(s)	16, 116, 375
MboII	GAAGA	3 cut(s)	373, 382, 649
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	2 cut(s)	71, 341
MluCI	AATT	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	5 cut(s)	15, 107, 263, 389, 403
MroI	TCCGGA	1 cut(s)	63
MseI	TTAA	3 cut(s)	258, 290, 555
MslI	CAYNNNNRTG	2 cut(s)	142, 269
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	1 cut(s)	64
MssI	GTTTAAAC	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	38, 353
NdeII	GATC	3 cut(s)	16, 116, 375
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	274, 446
NlaIV	GGNNCC	3 cut(s)	520, 540, 589
NmuCI	GTSAC	1 cut(s)	532
NspI	RCATGY	1 cut(s)	446
OliI	CACNNNNGTG	1 cut(s)	142
PaeI	GCATGC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	239, 470
PkrI	GCNGC	2 cut(s)	233, 363
PmeI	GTTTAAAC	1 cut(s)	291
Psp124BI	GAGCTC	2 cut(s)	71, 341
PspN4I	GGNNCC	3 cut(s)	520, 540, 589
PspPI	GGNCC	2 cut(s)	147, 283
PsuI	RGATCY	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	2 cut(s)	142, 269
SacI	GAGCTC	2 cut(s)	71, 341
SaqAI	TTAA	3 cut(s)	258, 290, 555
SatI	GCNGC	2 cut(s)	232, 362
Sau3AI	GATC	3 cut(s)	16, 116, 375
Sau96I	GGNCC	2 cut(s)	147, 283
SduI	GDGCHC	2 cut(s)	71, 341
SetI	ASST	6 cut(s)	71, 90, 104, 251, 341, 492
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	2 cut(s)	142, 269
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	1 cut(s)	79
SspI	AATATT	2 cut(s)	352, 601
SspMI	CTAG	3 cut(s)	99, 120, 330
SstI	GAGCTC	2 cut(s)	71, 341
TaaI	ACNGT	2 cut(s)	287, 538
TaqI	TCGA	1 cut(s)	221
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	2 cut(s)	239, 470
Tru1I	TTAA	3 cut(s)	258, 290, 555
Tru9I	TTAA	3 cut(s)	258, 290, 555
TscAI	CASTG	2 cut(s)	42, 144
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	2 cut(s)	231, 361
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	649
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	2 cut(s)	42, 144
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	3 cut(s)	99, 120, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.