Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023005.1

Orthogroup ID

OG0010355

Physical Location & Seq

Genomic Coordinates Forward (+)

19776 .. 21461

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023005.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggctattattggggatctgagagtctcggctacactggcttctcactctctccggagctctttgccgtcttcaaaggtagaatccgttagctttctgaatggagggtctagcatttctgaaattaaaccgaagtggcccagtatggcatttgataggcgtgatattcgtcaacattccaagcgatctattggagattttcaaatgtcgccgaactccattaaccaagatgctgagagcttcctcattaatgccatcaatatgagtttctttgaacgattcaacttggcttggaagatattgttcccatcaccagccgctagaaggagctctaatgcaaatatagccaagcagcgcttgaagatgatcctcttctctgaccgatgtgcagttagtgatgaggctaaacggaagattgtcagcaacattgtgcatgctctatcagattttgtggagatagaatcgcgcgacaaagttcagctgagtgtgtctactgatactgacctcggtaccatttactctgtcacagtgcctgtaagacgggttaagccagaatatcaaattggagatgagactggaacaataacaaatatcgaatacaaagatactggagaaaattctggttctgttgatgtcaggttcgatttctttgtccctgacgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0019899 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051117 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MinE

Protein Analysis

221

Amino Acids

24.7

Weight (kDa)

6.85

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69390
fragaria_vesca	FvH4_4g30590
malus_domestica	MD16G1066100.v1.1
prunus_persica	Prupe.1G281100_v2.0.a1
pyrus_communis	pycom13g05910 pycom16g05760
rosa_chinensis	RchiOBHm_Chr4g0438981 RchiOBHm_Chr5g0013451
rosa_laevigata	RLG00000006313
rosa_multiflora	Rmu_sc0005887.1_g000007 Rmu_sc0018732.1_g000001 Rmu_sc0023005.1_g000005 Rmu_sc0023254.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380000
rosa_rugosa	Rorug04G0314900
rosa_samantha	Rh4AG365500 Rh4BG376700 Rh4CG390800 Rh4DG371400
rosa_wichuraiana	Rw0G007380 Rw0G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	491
AccII	CGCG	2 cut(s)	466, 468
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	2 cut(s)	24, 361
AcsI	RAATTY	1 cut(s)	616
AfaI	GTAC	1 cut(s)	511
AfeI	AGCGCT	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	5 cut(s)	75, 203, 275, 283, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	5 cut(s)	60, 93, 240, 330, 481
AluI	AGCT	5 cut(s)	60, 93, 240, 330, 481
Alw21I	GWGCWC	2 cut(s)	62, 332
Alw26I	GTCTC	2 cut(s)	31, 566
AlwI	GGATC	2 cut(s)	24, 361
AlwNI	CAGNNNCTG	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	54
Aor51HI	AGCGCT	1 cut(s)	356
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	616
AseI	ATTAAT	1 cut(s)	249
Asp718I	GGTACC	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	357, 468
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	303
BaeI	ACNNNNGTAYC	2 cut(s)	493, 526
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	2 cut(s)	62, 332
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	62, 332
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	263, 316
BceAI	ACGGC	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	31, 566
BfaI	CTAG	2 cut(s)	111, 321
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	2 cut(s)	318, 353
BlsI	GCNGC	2 cut(s)	319, 354
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	511
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	505
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	4 cut(s)	42, 141, 580, 613
BseAI	TCCGGA	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	3 cut(s)	11, 225, 473
BseNI	ACTGG	4 cut(s)	42, 141, 580, 613
BseXI	GCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	408
Bsh1236I	CGCG	2 cut(s)	466, 468
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	62, 332
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	2 cut(s)	31, 566
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	62, 332
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	16, 185, 366
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	3 cut(s)	12, 226, 474
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	2 cut(s)	466, 468
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	2 cut(s)	24, 361
BspT107I	GGYRCC	1 cut(s)	509
BsrI	ACTGG	4 cut(s)	42, 141, 580, 613
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	3 cut(s)	16, 185, 366
Bst4CI	ACNGT	1 cut(s)	529
Bst6I	CTCTTC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	20, 234, 482
BstFNI	CGCG	2 cut(s)	466, 468
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	357, 468
BstKTI	GATC	3 cut(s)	19, 188, 369
BstMAI	GTCTC	2 cut(s)	31, 566
BstMBI	GATC	3 cut(s)	16, 185, 366
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 344
BstNSI	RCATGY	1 cut(s)	437
BstUI	CGCG	2 cut(s)	466, 468
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	35, 534
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	2 cut(s)	357, 468
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	510
CviAII	CATG	1 cut(s)	434
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	3 cut(s)	20, 234, 482
DpnI	GATC	3 cut(s)	18, 187, 368
DpnII	GATC	3 cut(s)	16, 185, 366
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Ecl136II	GAGCTC	2 cut(s)	60, 330
Eco24I	GRGCYC	2 cut(s)	62, 332
Eco47III	AGCGCT	1 cut(s)	356
Eco53kI	GAGCTC	2 cut(s)	60, 330
EcoICRI	GAGCTC	2 cut(s)	60, 330
EcoT38I	GRGCYC	2 cut(s)	62, 332
FaeI	CATG	1 cut(s)	437
FaiI	YATR	4 cut(s)	146, 263, 344, 435
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	2 cut(s)	318, 353
FriOI	GRGCYC	2 cut(s)	62, 332
Fsp4HI	GCNGC	2 cut(s)	318, 353
FspBI	CTAG	2 cut(s)	111, 321
GlaI	GCGC	2 cut(s)	356, 467
GluI	GCNGC	2 cut(s)	318, 353
GsuI	CTGGAG	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	2 cut(s)	357, 468
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	2 cut(s)	355, 466
HinP1I	GCGC	2 cut(s)	355, 466
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HinfI	GANTC	4 cut(s)	24, 83, 279, 461
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	303
Hpy166II	GTNNAC	2 cut(s)	173, 492
Hpy188I	TCNGA	5 cut(s)	21, 99, 121, 379, 445
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	2 cut(s)	173, 492
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4V	TGCA	3 cut(s)	338, 389, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 344
HpyF3I	CTNAG	3 cut(s)	20, 234, 482
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	2 cut(s)	355, 466
Kpn2I	TCCGGA	1 cut(s)	54
KpnI	GGTACC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	16, 185, 366
LmnI	GCTCC	2 cut(s)	57, 327
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	111, 321
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	3 cut(s)	18, 187, 368
MboI	GATC	3 cut(s)	16, 185, 366
MboII	GAAGA	5 cut(s)	63, 307, 364, 373, 424
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	62, 332
MluCI	AATT	3 cut(s)	123, 561, 616
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	98, 254, 380, 394, 515
MroI	TCCGGA	1 cut(s)	54
MseI	TTAA	4 cut(s)	126, 222, 249, 546
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	1 cut(s)	55
MvnI	CGCG	2 cut(s)	466, 468
MwoI	GCNNNNNNNGC	2 cut(s)	38, 344
NdeII	GATC	3 cut(s)	16, 185, 366
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	1 cut(s)	511
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	523
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	83, 279, 461
PkrI	GCNGC	2 cut(s)	319, 354
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	249
Psp124BI	GAGCTC	2 cut(s)	62, 332
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	2 cut(s)	62, 332
SaqAI	TTAA	4 cut(s)	126, 222, 249, 546
SatI	GCNGC	2 cut(s)	318, 353
Sau3AI	GATC	3 cut(s)	16, 185, 366
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	62, 332
SetI	ASST	8 cut(s)	62, 81, 95, 242, 332, 483, 507, 641
SfaNI	GCATC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	260
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	3 cut(s)	123, 561, 616
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	2 cut(s)	111, 321
SstI	GAGCTC	2 cut(s)	62, 332
TaaI	ACNGT	1 cut(s)	529
TaqI	TCGA	2 cut(s)	594, 642
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	123, 561, 616
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	3 cut(s)	83, 279, 461
Tru1I	TTAA	4 cut(s)	126, 222, 249, 546
Tru9I	TTAA	4 cut(s)	126, 222, 249, 546
TscAI	CASTG	2 cut(s)	42, 534
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	523
TspGWI	ACGGA	2 cut(s)	76, 424
TspRI	CASTG	2 cut(s)	42, 534
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	1 cut(s)	616
XceI	RCATGY	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	491
XspI	CTAG	2 cut(s)	111, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.