Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010355

Physical Location & Seq

Genomic Coordinates Forward (+)

3877675 .. 3879427

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCGATTTTGGGGGATCTGAGTGTCTCGGCTACGCTGAATTCTCACTCGACGCACTCTATCCGAACCCTTCGGCCCAATTCAAAGGTAGACTTTGCTAGCTTTCCAAATGGAGGGTCTTGCATTTCTGAGATCACGCCAAAATGGCCCAGTATGTCATTTGATAGACGTAACATTCGTCAAAATTCCAAGCGGTTATCTGGAGATTTTCAATTGTCATCGAACTCAAGTAGCCAAGATTCCGAGAGCTTCCTCCTCAACGCCATCAACATGAGTTTCTTTGACCGTGTAAACTTGGCTTGGAAGATACTATTCCCATCTCCAGCATCTAGGAGGAGCTCAAATGCTAACATTGCCAAGCAGCGGTTGAAGATGATCCTGTTCTCTGACAGATGCGCAGTTAGTGATGAGGCTAAAAGATTGATCGTCAACAACATTGTGCACGCTCTATCAGATTTCGTCGAGATAGAATCGCGAGACAAAGTTCAGCTGAGTGTGTCAGCCGATACTGATGTGGGAACCATTTACTCCGTCACTGTACCTGTAAGACGGGTTAAGCCAGAATACCAGATTGGAGACGAGACTGGGTCGATAACAAATATCGAGTACAAAGATACTGGAGACAGTTCAGGCTCTGTTGATGTCAAATTTGATTTCTTCATCCCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0019899 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051117 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MinE

Protein Analysis

224

Amino Acids

24.75

Weight (kDa)

6.84

Isoelectric Point (pI)

61.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MinE	PF03776	116 - 183	3.9e-13	Septum formation topological specificity factor MinE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69390
fragaria_vesca	FvH4_4g30590
malus_domestica	MD16G1066100.v1.1
prunus_persica	Prupe.1G281100_v2.0.a1
pyrus_communis	pycom13g05910 pycom16g05760
rosa_chinensis	RchiOBHm_Chr4g0438981 RchiOBHm_Chr5g0013451
rosa_laevigata	RLG00000006313
rosa_multiflora	Rmu_sc0005887.1_g000007 Rmu_sc0018732.1_g000001 Rmu_sc0023005.1_g000005 Rmu_sc0023254.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380000
rosa_rugosa	Rorug04G0314900
rosa_samantha	Rh4AG365500 Rh4BG376700 Rh4CG390800 Rh4DG371400
rosa_wichuraiana	Rw0G007380 Rw0G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	475
AciI	CCGC	2 cut(s)	193, 364
AclWI	GGATC	2 cut(s)	24, 370
AcsI	RAATTY	3 cut(s)	40, 184, 647
AfaI	GTAC	2 cut(s)	540, 608
AfiI	CCNNNNNNNGG	2 cut(s)	113, 363
AgsI	TTSAA	3 cut(s)	84, 212, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	4 cut(s)	102, 249, 339, 490
AluI	AGCT	4 cut(s)	102, 249, 339, 490
Alw21I	GWGCWC	2 cut(s)	341, 444
Alw26I	GTCTC	5 cut(s)	31, 471, 570, 575, 615
Alw44I	GTGCAC	1 cut(s)	440
AlwI	GGATC	2 cut(s)	24, 370
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	2 cut(s)	74, 146
ApaLI	GTGCAC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	3 cut(s)	40, 184, 647
ArsI	GACNNNNNNTTYG	4 cut(s)	101, 133, 159, 191
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	75, 147
AsuNHI	GCTAGC	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	444
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanII	GRGCYC	1 cut(s)	341
Bbv12I	GWGCWC	2 cut(s)	341, 444
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	272, 325
BcoDI	GTCTC	5 cut(s)	31, 471, 570, 575, 615
BfaI	CTAG	2 cut(s)	99, 330
BglI	GCCNNNNNGGC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
BmgT120I	GGNCC	2 cut(s)	75, 147
BmiI	GGNNCC	1 cut(s)	520
BmrI	ACTGGG	2 cut(s)	144, 594
BmsI	GCATC	2 cut(s)	335, 383
BmtI	GCTAGC	1 cut(s)	102
BmuI	ACTGGG	2 cut(s)	144, 594
BpmI	CTGGAG	3 cut(s)	222, 306, 639
BpuEI	CTTGAG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 363
Bse1I	ACTGG	3 cut(s)	150, 589, 622
Bse3DI	GCAATG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	660
BseLI	CCNNNNNNNGG	2 cut(s)	113, 363
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	3 cut(s)	11, 120, 482
BseNI	ACTGG	3 cut(s)	150, 589, 622
BseRI	GAGGAG	2 cut(s)	245, 349
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	2 cut(s)	76, 148
BsiHKAI	GWGCWC	2 cut(s)	341, 444
BslI	CCNNNNNNNGG	2 cut(s)	113, 363
BsmAI	GTCTC	5 cut(s)	31, 471, 570, 575, 615
BsmBI	CGTCTC	1 cut(s)	570
BsnI	GGCC	2 cut(s)	76, 148
Bsp1286I	GDGCHC	2 cut(s)	341, 444
Bsp143I	GATC	4 cut(s)	16, 132, 375, 423
Bsp68I	TCGCGA	1 cut(s)	475
BspACI	CCGC	2 cut(s)	193, 364
BspANI	GGCC	2 cut(s)	76, 148
BspCNI	CTCAG	3 cut(s)	12, 121, 483
BspFNI	CGCG	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	24, 370
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	150, 589, 622
BssMI	GATC	4 cut(s)	16, 132, 375, 423
Bst4CI	ACNGT	3 cut(s)	287, 538, 626
BstC8I	GCNNGC	2 cut(s)	100, 444
BstDEI	CTNAG	3 cut(s)	20, 129, 491
BstF5I	GGATG	1 cut(s)	660
BstFNI	CGCG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	4 cut(s)	19, 135, 378, 426
BstMAI	GTCTC	5 cut(s)	31, 471, 570, 575, 615
BstMBI	GATC	4 cut(s)	16, 132, 375, 423
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 353
BstSLI	GKGCMC	1 cut(s)	444
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	76, 148
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	534
BtuMI	TCGCGA	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	100, 444
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	2 cut(s)	75, 147
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	539, 607
CviAII	CATG	1 cut(s)	271
CviQI	GTAC	2 cut(s)	539, 607
DdeI	CTNAG	3 cut(s)	20, 129, 491
DpnI	GATC	4 cut(s)	18, 134, 377, 425
DpnII	GATC	4 cut(s)	16, 132, 375, 423
Ecl136II	GAGCTC	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	1 cut(s)	274
FaiI	YATR	2 cut(s)	155, 272
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	2 cut(s)	99, 330
FspI	TGCGCA	1 cut(s)	397
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	1 cut(s)	362
GsuI	CTGGAG	3 cut(s)	222, 306, 639
HaeIII	GGCC	2 cut(s)	76, 148
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	239, 470
Hpy166II	GTNNAC	4 cut(s)	91, 292, 430, 442
Hpy188I	TCNGA	6 cut(s)	21, 65, 130, 244, 388, 454
Hpy188III	TCNNGA	3 cut(s)	201, 463, 474
Hpy8I	GTNNAC	4 cut(s)	91, 292, 430, 442
Hpy99I	CGWCG	2 cut(s)	55, 464
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	287, 538, 626
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	123, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 353
HpyF3I	CTNAG	3 cut(s)	20, 129, 491
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	396
Kzo9I	GATC	4 cut(s)	16, 132, 375, 423
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	335, 383
MaeI	CTAG	2 cut(s)	99, 330
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	170, 532
MalI	GATC	4 cut(s)	18, 134, 377, 425
MboI	GATC	4 cut(s)	16, 132, 375, 423
MboII	GAAGA	3 cut(s)	316, 382, 649
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	341, 444
MluCI	AATT	5 cut(s)	40, 79, 184, 212, 647
MnlI	CCTC	5 cut(s)	107, 263, 266, 327, 403
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	2 cut(s)	364, 490
MunI	CAATTG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	2 cut(s)	145, 353
NdeII	GATC	4 cut(s)	16, 132, 375, 423
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	520
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	532
NruI	TCGCGA	1 cut(s)	475
NsbI	TGCGCA	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	239, 470
PflFI	GACNNNGTC	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	2 cut(s)	75, 147
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	586
PvuII	CAGCTG	1 cut(s)	490
RruI	TCGCGA	1 cut(s)	475
RsaI	GTAC	2 cut(s)	540, 608
RsaNI	GTAC	2 cut(s)	539, 607
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	4 cut(s)	16, 132, 375, 423
Sau96I	GGNCC	2 cut(s)	75, 147
SduI	GDGCHC	2 cut(s)	341, 444
SetI	ASST	7 cut(s)	90, 104, 172, 251, 341, 492, 544
SfaNI	GCATC	2 cut(s)	335, 383
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	5 cut(s)	40, 79, 184, 212, 647
SsiI	CCGC	2 cut(s)	193, 364
SspMI	CTAG	2 cut(s)	99, 330
SstI	GAGCTC	1 cut(s)	341
TaaI	ACNGT	3 cut(s)	287, 538, 626
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	5 cut(s)	50, 221, 462, 590, 603
TasI	AATT	5 cut(s)	40, 79, 184, 212, 647
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	2 cut(s)	239, 470
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	649
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	1 cut(s)	541
Tth111I	GACNNNGTC	1 cut(s)	586
VneI	GTGCAC	1 cut(s)	440
XapI	RAATTY	3 cut(s)	40, 184, 647
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	99, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.