Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010355

Physical Location & Seq

Genomic Coordinates Reverse (-)

48971875 .. 48977583

Gene Structure 5709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0314900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATATCCCGAATGACTATTTCTCCATTGACGAAGATTTTAGGGTTTCTTTTTCTTACTATTCTGTTCTTGCTGGTGGTTCATGGCGAGGTGCATCACTATGAATTTGTTGTTAGGGAGAAGAACTTCACTAGGCTATGTGAAACAAAGAGCATGCTAGTCGTAAATGACAGCTTTCCAGGTCCGGAGATACGAGTTCGCAAAGGAGACACGGTTTATGTAAATGTTCATAACCAAGGATATTATGGTTTCAGTATTCACTGTGATTGGACAAGAGCGTCCGTTCAAGGTGCCATTGTCATCTTGCCTGCTGTTGGAACCACATTTCAATTTCCTCAACCAGATGAAGATGAGATCATTGTGTTGGCCTCTTGGTACATGGGAGATTTGAAAGCAGTAGTTGATACGACTATGGAAACCGGTAGCGACTTACCCTCTTCTGATGCTTACACTATAAATGGCCAGCCAGGGGATCTTTCCAGTGATAGACAAGAACATCTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0019899 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051117 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MinE

Protein Analysis

168

Amino Acids

18.88

Weight (kDa)

5.01

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	38 - 89	3.1e-11	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69390
fragaria_vesca	FvH4_4g30590
malus_domestica	MD16G1066100.v1.1
prunus_persica	Prupe.1G281100_v2.0.a1
pyrus_communis	pycom13g05910 pycom16g05760
rosa_chinensis	RchiOBHm_Chr4g0438981 RchiOBHm_Chr5g0013451
rosa_laevigata	RLG00000006313
rosa_multiflora	Rmu_sc0005887.1_g000007 Rmu_sc0018732.1_g000001 Rmu_sc0023005.1_g000005 Rmu_sc0023254.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380000
rosa_rugosa	Rorug04G0314900
rosa_samantha	Rh4AG365500 Rh4BG376700 Rh4CG390800 Rh4DG371400
rosa_wichuraiana	Rw0G007380 Rw0G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	184
AclWI	GGATC	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	314, 469
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	3 cut(s)	287, 329, 391
AjnI	CCWGG	2 cut(s)	178, 466
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	480
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	366, 460
ApoI	RAATTY	1 cut(s)	104
AsiGI	ACCGGT	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	2 cut(s)	180, 468
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	2 cut(s)	132, 158
Bme1390I	CCNGG	2 cut(s)	180, 468
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	292, 319
BmrFI	CCNGG	2 cut(s)	180, 468
BmsI	GCATC	2 cut(s)	103, 433
BsaJI	CCNNGG	2 cut(s)	235, 467
BsaWI	WCCGGW	2 cut(s)	184, 419
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 469
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	180, 468
BseDI	CCNNGG	2 cut(s)	235, 467
BseLI	CCNNNNNNNGG	2 cut(s)	314, 469
BseNI	ACTGG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	368, 462
BshNI	GGYRCC	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	419
BsiSI	CCGG	2 cut(s)	185, 420
BslI	CCNNNNNNNGG	2 cut(s)	314, 469
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	368, 462
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	354, 472
BspANI	GGCC	2 cut(s)	368, 462
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	292, 319
BspPI	GGATC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	480
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	2 cut(s)	235, 467
BssMI	GATC	2 cut(s)	354, 472
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	180, 468
Bst4CI	ACNGT	2 cut(s)	214, 263
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	155, 309, 464
BstKTI	GATC	2 cut(s)	357, 475
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	354, 472
BstNI	CCWGG	2 cut(s)	180, 468
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	178, 466
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	368, 462
BtsIMutI	CAGTG	2 cut(s)	259, 487
Cac8I	GCNNGC	3 cut(s)	155, 309, 464
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	376
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	3 cut(s)	83, 154, 379
CviJI	RGCY	5 cut(s)	136, 174, 368, 462, 466
CviKI_1	RGCY	5 cut(s)	136, 174, 368, 462, 466
CviQI	GTAC	1 cut(s)	376
DpnI	GATC	2 cut(s)	356, 474
DpnII	GATC	2 cut(s)	354, 472
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	178, 466
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	3 cut(s)	86, 157, 382
FatI	CATG	3 cut(s)	82, 153, 378
FspBI	CTAG	2 cut(s)	132, 158
HaeIII	GGCC	2 cut(s)	368, 462
HapII	CCGG	2 cut(s)	185, 420
HgaI	GACGC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	86, 157, 382
HpaII	CCGG	2 cut(s)	185, 420
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	3 cut(s)	9, 185, 500
HpyCH4III	ACNGT	2 cut(s)	214, 263
HpyCH4V	TGCA	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	86, 157, 382
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	354, 472
LweI	GCATC	2 cut(s)	103, 433
MaeI	CTAG	2 cut(s)	132, 158
MalI	GATC	2 cut(s)	356, 474
MboI	GATC	2 cut(s)	354, 472
MboII	GAAGA	4 cut(s)	46, 133, 359, 429
MflI	RGATCY	1 cut(s)	472
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	2 cut(s)	104, 329
MluNI	TGGCCA	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	4 cut(s)	82, 345, 379, 445
Mox20I	TGGCCA	1 cut(s)	462
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	462
MspI	CCGG	2 cut(s)	185, 420
MspR9I	CCNGG	2 cut(s)	180, 468
MvaI	CCWGG	2 cut(s)	180, 468
NdeII	GATC	2 cut(s)	354, 472
NlaIII	CATG	3 cut(s)	86, 157, 382
NlaIV	GGNNCC	2 cut(s)	292, 319
NspI	RCATGY	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	178, 466
PspGI	CCWGG	2 cut(s)	178, 466
PspN4I	GGNNCC	2 cut(s)	292, 319
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	354, 472
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	180, 468
SetI	ASST	4 cut(s)	93, 176, 184, 292
SfaNI	GCATC	2 cut(s)	103, 433
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	99
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	2 cut(s)	104, 329
SspMI	CTAG	2 cut(s)	132, 158
StyD4I	CCNGG	2 cut(s)	178, 466
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	214, 263
TasI	AATT	2 cut(s)	104, 329
TscAI	CASTG	2 cut(s)	266, 487
TspDTI	ATGAA	4 cut(s)	71, 117, 218, 360
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	2 cut(s)	266, 487
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	132, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.