Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017634

Physical Location & Seq

Genomic Coordinates Forward (+)

29370937 .. 29372120

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G297800.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGAAGGCTACATCTAAGATAGCTGTCATCAGCTTTGTCGTCTTATTGGTCATTGCATCTTGTGCACCATTATTCTCAAGGGTACCAGCAGGAGCTGAAGCAGCCAAGCCCGTCAAAAGATGTAACAGTAATGACGACTGCAAGTTATTTCCATGCACCTCAAGCTTTGGTCTTTGCGTTAACCAATTGTGCACATGCCAAGTCGCAGATATTAGTATCAATGACTACCCTGCGCCCTGCAGAAGTAGCACTGACTGCAGAGACACTGCAGAAGACTGTCCATGGGGCAAGGCTGTATGTCATAACGGGAAATGCATATGCATACACATGAACCCAGCAACATCATCAGACAAGTCCGGCTCTCGCCTCCAAAATCAAAACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos_2 RVT_1 RVT_3

Protein Analysis

130

Amino Acids

13.78

Weight (kDa)

7.42

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38820 FvH4_3g38830
prunus_persica	Prupe.1G297800_v2.0.a1 Prupe.1G297900_v2.0.a1 Prupe.5G016900_v2.0.a1
pyrus_communis	pycom16g04630
rosa_roxburghii	Rroxscaffold_7G00161770 Rroxscaffold_7G00190960
rosa_rugosa	Rorug06G0346900.1 Rorug06G0349400
rosa_samantha	Rh6BG439400 Rh6CG475700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	87
AluBI	AGCT	4 cut(s)	26, 36, 98, 168
AluI	AGCT	4 cut(s)	26, 36, 98, 168
Alw21I	GWGCWC	2 cut(s)	70, 197
Alw26I	GTCTC	1 cut(s)	258
Alw44I	GTGCAC	2 cut(s)	66, 193
AlwNI	CAGNNNCTG	1 cut(s)	98
ApaLI	GTGCAC	2 cut(s)	66, 193
ApeKI	GCWGC	1 cut(s)	104
Asp718I	GGTACC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	238
BaeGI	GKGCMC	2 cut(s)	70, 197
BanI	GGYRCC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	2 cut(s)	70, 197
BbvI	GCAGC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	258
BfmI	CTRYAG	3 cut(s)	241, 259, 270
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	87
BmsI	GCATC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	282
BpuEI	CTTGAG	2 cut(s)	64, 148
BsaJI	CCNNGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	54
BseSI	GKGCMC	2 cut(s)	70, 197
BseXI	GCAGC	1 cut(s)	116
BseYI	CCCAGC	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	85
BsiHKAI	GWGCWC	2 cut(s)	70, 197
BsiSI	CCGG	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	70, 197
Bsp19I	CCATGG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	3 cut(s)	245, 263, 274
BspT107I	GGYRCC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	131, 281
BstAPI	GCANNNNNTGC	2 cut(s)	65, 258
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 104, 165, 249, 258
BstNSI	RCATGY	1 cut(s)	201
BstSFI	CTRYAG	3 cut(s)	241, 259, 270
BstSLI	GKGCMC	2 cut(s)	70, 197
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	252, 267
CaiI	CAGNNNCTG	1 cut(s)	98
CfoI	GCGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	4 cut(s)	156, 198, 285, 331
CviJI	RGCY	9 cut(s)	11, 26, 36, 98, 107, 112, 168, 296, 363
CviKI_1	RGCY	9 cut(s)	11, 26, 36, 98, 107, 112, 168, 296, 363
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	284
EcoT22I	ATGCAT	2 cut(s)	320, 326
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	4 cut(s)	159, 201, 288, 334
FaiI	YATR	9 cut(s)	157, 199, 286, 301, 306, 320, 322, 326, 332
FatI	CATG	4 cut(s)	155, 197, 284, 330
FauNDI	CATATG	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	341
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	4 cut(s)	159, 201, 288, 334
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	360
Hpy166II	GTNNAC	3 cut(s)	68, 184, 195
Hpy188I	TCNGA	1 cut(s)	352
Hpy8I	GTNNAC	3 cut(s)	68, 184, 195
HpyCH4III	ACNGT	2 cut(s)	131, 281
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 104, 165, 249, 258
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	159, 201, 288, 334
HspAI	GCGC	1 cut(s)	236
KpnI	GGTACC	1 cut(s)	89
KspAI	GTTAAC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	6 cut(s)	78, 102, 246, 253, 351, 373
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	125
MboII	GAAGA	1 cut(s)	287
MfeI	CAATTG	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	70, 197
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	2 cut(s)	172, 380
Mph1103I	ATGCAT	2 cut(s)	320, 326
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	188
MwoI	GCNNNNNNNGC	5 cut(s)	65, 104, 165, 249, 258
NcoI	CCATGG	1 cut(s)	284
NdeI	CATATG	1 cut(s)	320
NlaIII	CATG	4 cut(s)	159, 201, 288, 334
NlaIV	GGNNCC	1 cut(s)	87
NsiI	ATGCAT	2 cut(s)	320, 326
NspI	RCATGY	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	87
PstI	CTGCAG	3 cut(s)	245, 263, 274
PstNI	CAGNNNCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	105
SduI	GDGCHC	2 cut(s)	70, 197
SetI	ASST	5 cut(s)	28, 38, 100, 164, 170
SfaNI	GCATC	1 cut(s)	68
SfcI	CTRYAG	3 cut(s)	241, 259, 270
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	2 cut(s)	79, 163
SmoI	CTYRAG	2 cut(s)	79, 163
Sse9I	AATT	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	131, 281
TasI	AATT	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	259, 274
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	2 cut(s)	259, 274
VneI	GTGCAC	2 cut(s)	66, 193
XceI	RCATGY	1 cut(s)	201
Zsp2I	ATGCAT	2 cut(s)	320, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.