Prupe.1G303400_v2.0.a1

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013999
Physical Location & Seq
Forward (+)
29756297 .. 29758559
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G303400.1

Sequence Viewer

Length: 798 bp
ATGAGGACAATTATGGCCAAGACCTCTCATGACTCTTCTTTCTCCTTCTCCAGGAGGTACTTCCACTGGAAAAAGAAAGTAGAGGATGATGAAGATGATTACCACGAAATCTTAAACTTCAACTCATCATACTCACATTTCTCTGAGGAATCAGAGAAAGATGAACAGGAGCTTAGAATCCCAGTCTCAACAGACACTGCTTTGATCCCCGCAATAATACCACGCAAGAAACATTCTCTGATGTCAGTGTCCAAGATCCGGTCAGCTCTCACAGTGTTTGGTAAGAGGCGCTCTCGCTCTGGCCTCGGCACCAGAGTCATGGGTACTCTGTTCGGCTATCGTCGTGGACATGTTCATCTGGCATTTCAAGAAGAACCCAAGTTGAGCCCTGCCTTCCTGATTGAGCTTGCAACACCCACAAGTGTTTTGGTTCGAGAAATGGCTTCTGGGTTGGTGAGGATTGCCTTGGAGTGCGAGAAGAAAACAGAGAAGAAAGGTTTGAAAATGCTAGAGGAGCCACTCTGGAGGACTTACTGCAATGGAAAGAAATGTGGGTTTGCTATGAAGCGTGACTGTGGACCTGGGGAGTGGAAGGTTTTGAAAGCTCTGGAGCCAATTTCAATGGGGGCTGGTGTTTTGCCAGGAAGCGAAGATGGAGTTGGAGCTGAGGGTGAGCTCATGTACATGAGAGCTAAGTTTGAGAGAGTTGTGGGGTCTAAGGACTCTGAGGCTTTCTACATGATGAACCCTGATGGTTCTGGAGGTCCTGAACTTAGTATTTATCTGCTTAGAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

266

Amino Acids

29.9

Weight (kDa)

8.9

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25640 AT3G25640
fragaria_vesca FvH4_4g28270
malus_domestica MD13G1048700.v1.1 MD16G1050000.v1.1
prunus_persica Prupe.1G303400_v2.0.a1
pyrus_communis pycom16g04380
rosa_chinensis RchiOBHm_Chr4g0436141
rosa_laevigata RLG00000006537
rosa_multiflora Rmu_sc0022632.1_g000001
rosa_roxburghii Rroxscaffold_5G00377240
rosa_rugosa Rorug04G0292200
rosa_samantha Rh4AG346200 Rh4BG355300 Rh4CG369900 Rh4DG348900
rosa_wichuraiana Rw4G030270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AciI CCGC 1 cut(s) 210
AclWI GGATC 2 cut(s) 199, 250
AcoI YGGCCR 1 cut(s) 15
AfaI GTAC 3 cut(s) 59, 325, 683
AfiI CCNNNNNNNGG 2 cut(s) 51, 258
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 5 cut(s) 121, 368, 502, 601, 621
AjnI CCWGG 3 cut(s) 50, 580, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AluBI AGCT 7 cut(s) 172, 266, 406, 605, 665, 676, 692
AluI AGCT 7 cut(s) 172, 266, 406, 605, 665, 676, 692
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 2 cut(s) 199, 250
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 2 cut(s) 15, 301
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 578, 764
AsuHPI GGTGA 2 cut(s) 466, 683
AvaII GGWCC 2 cut(s) 578, 764
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 2 cut(s) 389, 678
Bbv12I GWGCWC 1 cut(s) 678
BbvCI CCTCAGC 1 cut(s) 666
BccI CCATC 2 cut(s) 647, 746
BciT130I CCWGG 3 cut(s) 52, 582, 642
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 2 cut(s) 509, 796
BfoI RGCGCY 1 cut(s) 292
Bme1390I CCNGG 3 cut(s) 52, 582, 642
Bme18I GGWCC 2 cut(s) 578, 764
BmgT120I GGNCC 2 cut(s) 578, 764
BmiI GGNNCC 3 cut(s) 310, 516, 612
BmrFI CCNGG 3 cut(s) 52, 582, 642
BmrI ACTGGG 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpmI CTGGAG 4 cut(s) 34, 544, 629, 780
Bpu10I CCTNAGC 1 cut(s) 666
BsaJI CCNNGG 3 cut(s) 304, 465, 581
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 258
Bse1I ACTGG 2 cut(s) 71, 182
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 3 cut(s) 52, 582, 642
BseDI CCNNGG 3 cut(s) 304, 465, 581
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 51, 258
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 3 cut(s) 135, 657, 717
BseNI ACTGG 2 cut(s) 71, 182
BseRI GAGGAG 1 cut(s) 527
BshFI GGCC 2 cut(s) 17, 303
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 678
BsiSI CCGG 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 51, 258
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 2 cut(s) 17, 303
Bsp1286I GDGCHC 2 cut(s) 389, 678
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 2 cut(s) 204, 255
BspACI CCGC 1 cut(s) 210
BspANI GGCC 2 cut(s) 17, 303
BspCNI CTCAG 3 cut(s) 136, 658, 718
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 310, 516, 612
BspPI GGATC 2 cut(s) 199, 250
BspT107I GGYRCC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 544
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 2 cut(s) 71, 182
BssECI CCNNGG 3 cut(s) 304, 465, 581
BssMI GATC 2 cut(s) 204, 255
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 3 cut(s) 52, 582, 642
Bst4CI ACNGT 2 cut(s) 274, 575
Bst6I CTCTTC 1 cut(s) 40
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 8 cut(s) 144, 173, 666, 693, 717, 726, 773, 788
BstENI CCTNNNNNAGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 2 cut(s) 207, 258
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 204, 255
BstMWI GCNNNNNNNGC 1 cut(s) 514
BstNI CCWGG 3 cut(s) 52, 582, 642
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 3 cut(s) 50, 580, 640
BstX2I RGATCY 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 255
BsuRI GGCC 2 cut(s) 17, 303
BtsCI GGATG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 4 cut(s) 64, 195, 252, 279
Cac8I GCNNGC 1 cut(s) 408
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 28
CfoI GCGC 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 578, 764
Csp6I GTAC 3 cut(s) 58, 324, 682
CviAII CATG 6 cut(s) 29, 319, 350, 679, 685, 739
CviQI GTAC 3 cut(s) 58, 324, 682
DdeI CTNAG 8 cut(s) 144, 173, 666, 693, 717, 726, 773, 788
DpnI GATC 2 cut(s) 206, 257
DpnII GATC 2 cut(s) 204, 255
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 676
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 2 cut(s) 389, 678
Eco47I GGWCC 2 cut(s) 578, 764
Eco53kI GAGCTC 1 cut(s) 676
EcoICRI GAGCTC 1 cut(s) 676
EcoNI CCTNNNNNAGG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 764
EcoRII CCWGG 3 cut(s) 50, 580, 640
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 389, 678
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 6 cut(s) 32, 322, 353, 682, 688, 742
FaiI YATR 9 cut(s) 14, 30, 130, 320, 351, 563, 680, 686, 740
FatI CATG 6 cut(s) 28, 318, 349, 678, 684, 738
FauI CCCGC 1 cut(s) 217
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 2 cut(s) 389, 678
FspBI CTAG 2 cut(s) 509, 796
GlaI GCGC 1 cut(s) 290
GsuI CTGGAG 4 cut(s) 34, 544, 629, 780
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 2 cut(s) 17, 303
HapII CCGG 1 cut(s) 259
HhaI GCGC 1 cut(s) 291
Hin1II CATG 6 cut(s) 32, 322, 353, 682, 688, 742
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HinfI GANTC 6 cut(s) 32, 149, 177, 315, 722, 792
HpaII CCGG 1 cut(s) 259
HphI GGTGA 2 cut(s) 466, 683
Hpy166II GTNNAC 2 cut(s) 347, 578
Hpy188I TCNGA 4 cut(s) 145, 154, 240, 727
Hpy188III TCNNGA 8 cut(s) 29, 368, 397, 434, 523, 608, 759, 767
Hpy8I GTNNAC 2 cut(s) 347, 578
Hpy99I CGWCG 1 cut(s) 345
HpyAV CCTTC 3 cut(s) 55, 403, 586
HpyCH4III ACNGT 2 cut(s) 274, 575
HpyCH4V TGCA 2 cut(s) 410, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 514
HpyF3I CTNAG 8 cut(s) 144, 173, 666, 693, 717, 726, 773, 788
Hsp92II CATG 6 cut(s) 32, 322, 353, 682, 688, 742
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 204, 255
LmnI GCTCC 4 cut(s) 169, 514, 610, 662
MaeI CTAG 2 cut(s) 509, 796
MaeIII GTNAC 1 cut(s) 569
MalI GATC 2 cut(s) 206, 257
MboI GATC 2 cut(s) 204, 255
MboII GAAGA 6 cut(s) 27, 104, 383, 490, 502, 662
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 2 cut(s) 389, 678
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 2 cut(s) 9, 615
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 3 cut(s) 26, 324, 716
MmeI TCCRAC 1 cut(s) 640
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 683
Msp20I TGGCCA 1 cut(s) 17
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 3 cut(s) 52, 582, 642
MvaI CCWGG 3 cut(s) 52, 582, 642
MwoI GCNNNNNNNGC 1 cut(s) 514
NdeII GATC 2 cut(s) 204, 255
NlaIII CATG 6 cut(s) 32, 322, 353, 682, 688, 742
NlaIV GGNNCC 3 cut(s) 310, 516, 612
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 569
NspI RCATGY 1 cut(s) 353
PagI TCATGA 1 cut(s) 28
PciI ACATGT 1 cut(s) 349
PfeI GAWTC 2 cut(s) 149, 177
PfoI TCCNGGA 1 cut(s) 50
PleI GAGTC 3 cut(s) 26, 323, 716
PpsI GAGTC 3 cut(s) 26, 323, 716
PpuMI RGGWCCY 1 cut(s) 764
PscI ACATGT 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 678
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 3 cut(s) 50, 580, 640
PspGI CCWGG 3 cut(s) 50, 580, 640
PspN4I GGNNCC 3 cut(s) 310, 516, 612
PspPI GGNCC 2 cut(s) 578, 764
PspPPI RGGWCCY 1 cut(s) 764
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 3 cut(s) 59, 325, 683
RsaNI GTAC 3 cut(s) 58, 324, 682
RseI CAYNNNNRTG 1 cut(s) 683
SacI GAGCTC 1 cut(s) 678
SaqAI TTAA 1 cut(s) 113
Sau3AI GATC 2 cut(s) 204, 255
Sau96I GGNCC 2 cut(s) 578, 764
SchI GAGTC 3 cut(s) 26, 324, 716
ScrFI CCNGG 3 cut(s) 52, 582, 642
SduI GDGCHC 2 cut(s) 389, 678
SinI GGWCC 2 cut(s) 578, 764
SmiMI CAYNNNNRTG 1 cut(s) 683
Sse9I AATT 2 cut(s) 9, 615
SsiI CCGC 1 cut(s) 210
SspMI CTAG 2 cut(s) 509, 796
SstI GAGCTC 1 cut(s) 678
StyD4I CCNGG 3 cut(s) 50, 580, 640
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 274, 575
TaqI TCGA 1 cut(s) 433
TasI AATT 2 cut(s) 9, 615
TatI WGTACW 1 cut(s) 681
TfiI GAWTC 2 cut(s) 149, 177
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 4 cut(s) 71, 202, 252, 279
TseFI GTSAC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 5 cut(s) 105, 177, 344, 578, 758
TspRI CASTG 4 cut(s) 71, 202, 252, 279
VpaK11BI GGWCC 2 cut(s) 578, 764
XagI CCTNNNNNAGG 1 cut(s) 49
XceI RCATGY 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XspI CTAG 2 cut(s) 509, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.