Rh4BG355300

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013999
Physical Location & Seq
Reverse (-)
51511936 .. 51513808
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG355300.1

Sequence Viewer

Length: 807 bp
ATGAGGACAATCATGGCAGCCAAGACCCCTCATGACTCGTCCTTCTCATTTTCTAGAAGGTACTTCTGGAAAAAGAAGGTCGACGATGATGAAGACGACGACCACGAAGTCCTCAACTTCAGTTCCTACTCACATTTCTCCGAGCAAGAGAAAGAAGAGGAGCTAGTCCGAAACATACATATGTCAACAACAACCGATCATCAAATTGCATCAGTCCTGCCAGAAGTGCCACGGAAGAAACACTCACTGGTCTCAGTCTCTAAGCTCCGGTCAGCTCTTACGCTATTCGGCAAGAGCCGTTCTGGCTCTCGCTCCGGTTTAATGGGTACTCTTTTCGGGTATCGTCGCGGGCATGTTCACTTGGCATTTCAGGAGGATCCCAAGTTGAACCCTACGTTTCTCATCGAGCTGGCTACGCCAACTAGTGTTCTGGTTCGAGAAATGGCTTCGGGGTTGGTCAGGATTGCGTTGGAGTGTGAGAAGAAGACTGATCATAAGAAGAAGGGGTTGAAGTTGCTGGAGGAGCCGCTGTGGAGGACTTACTGCAATGGCAAGAAGTGCGGTTTCGCTATGAGGCGAGATTGTGGTCCAGAGGAGTGGAAGGTGCTGAAAGCTCTGGAGCCAGTTTCAATGGGGGCTGGGGTTTTACCTGGGAATGAAGATGGAGCTGGATCTGAAGGTGAGCTCATGTATATGAGAGCGAAGTTTGAGAGAGTTGTGGGGTCTAAGGACTCAGAGGCCTTTTACATGATGAACCCTGATGGTTCTGGTGGTCCTGAACTCAGTGTTTACTTGCTTAGAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

268

Amino Acids

30.23

Weight (kDa)

8.25

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 108 - 267 2.1e-73 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25640 AT3G25640
fragaria_vesca FvH4_4g28270
malus_domestica MD13G1048700.v1.1 MD16G1050000.v1.1
prunus_persica Prupe.1G303400_v2.0.a1
pyrus_communis pycom16g04380
rosa_chinensis RchiOBHm_Chr4g0436141
rosa_laevigata RLG00000006537
rosa_multiflora Rmu_sc0022632.1_g000001
rosa_roxburghii Rroxscaffold_5G00377240
rosa_rugosa Rorug04G0292200
rosa_samantha Rh4AG346200 Rh4BG355300 Rh4CG369900 Rh4DG348900
rosa_wichuraiana Rw4G030270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 81
AccII CGCG 1 cut(s) 348
AciI CCGC 3 cut(s) 348, 527, 561
AclWI GGATC 3 cut(s) 371, 384, 679
AcuI CTGAAG 2 cut(s) 103, 696
AfaI GTAC 2 cut(s) 62, 328
AgsI TTSAA 3 cut(s) 388, 511, 630
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 1 cut(s) 649
AluBI AGCT 7 cut(s) 163, 265, 275, 409, 614, 668, 685
AluI AGCT 7 cut(s) 163, 265, 275, 409, 614, 668, 685
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 2 cut(s) 256, 262
AlwI GGATC 3 cut(s) 371, 384, 679
AoxI GGCC 1 cut(s) 738
ApeKI GCWGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 587, 773
AsuHPI GGTGA 1 cut(s) 692
AvaII GGWCC 2 cut(s) 587, 773
BamHI GGATCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 687
BbsI GAAGAC 2 cut(s) 99, 491
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 656, 755
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 651
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 256, 262
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 4 cut(s) 54, 164, 423, 805
BglI GCCNNNNNGGC 1 cut(s) 303
BisI GCNGC 2 cut(s) 18, 527
BlsI GCNGC 2 cut(s) 19, 528
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 2 cut(s) 587, 773
BmgT120I GGNCC 2 cut(s) 587, 773
BmiI GGNNCC 3 cut(s) 378, 525, 621
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 1 cut(s) 218
BpiI GAAGAC 2 cut(s) 99, 491
BpmI CTGGAG 2 cut(s) 539, 638
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 230, 650
BsaWI WCCGGW 2 cut(s) 267, 314
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bse1I ACTGG 2 cut(s) 252, 623
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 2 cut(s) 230, 650
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 3 cut(s) 267, 747, 796
BseNI ACTGG 2 cut(s) 252, 623
BseRI GAGGAG 3 cut(s) 173, 536, 608
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 638
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 687
BsiSI CCGG 2 cut(s) 268, 315
BsmAI GTCTC 2 cut(s) 256, 262
BsnI GGCC 1 cut(s) 740
Bso31I GGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 4 cut(s) 196, 376, 490, 671
BspACI CCGC 3 cut(s) 348, 527, 561
BspANI GGCC 1 cut(s) 740
BspCNI CTCAG 3 cut(s) 266, 746, 795
BspFNI CGCG 1 cut(s) 348
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 3 cut(s) 378, 525, 621
BspPI GGATC 3 cut(s) 371, 384, 679
BspTNI GGTCTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 2 cut(s) 252, 623
BssECI CCNNGG 2 cut(s) 230, 650
BssMI GATC 4 cut(s) 196, 376, 490, 671
Bst2UI CCWGG 1 cut(s) 651
Bst6I CTCTTC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 558
BstC8I GCNNGC 2 cut(s) 350, 411
BstDEI CTNAG 6 cut(s) 253, 261, 726, 733, 782, 797
BstDSI CCRYGG 1 cut(s) 230
BstFNI CGCG 1 cut(s) 348
BstKTI GATC 4 cut(s) 199, 379, 493, 674
BstMAI GTCTC 2 cut(s) 256, 262
BstMBI GATC 4 cut(s) 196, 376, 490, 671
BstMWI GCNNNNNNNGC 5 cut(s) 226, 303, 415, 523, 558
BstNI CCWGG 1 cut(s) 651
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 649
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 2 cut(s) 99, 491
BstX2I RGATCY 2 cut(s) 376, 671
BstXI CCANNNNNNTGG 1 cut(s) 597
BstYI RGATCY 2 cut(s) 376, 671
BsuRI GGCC 1 cut(s) 740
BtgI CCRYGG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 245, 790
Cac8I GCNNGC 2 cut(s) 350, 411
CciI TCATGA 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 587, 773
Csp6I GTAC 2 cut(s) 61, 327
CviAII CATG 5 cut(s) 13, 32, 353, 688, 748
CviQI GTAC 2 cut(s) 61, 327
DdeI CTNAG 6 cut(s) 253, 261, 726, 733, 782, 797
DpnI GATC 4 cut(s) 198, 378, 492, 673
DpnII GATC 4 cut(s) 196, 376, 490, 671
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 685
Eco147I AGGCCT 1 cut(s) 740
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 256
Eco47I GGWCC 2 cut(s) 587, 773
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 2 cut(s) 103, 696
EcoICRI GAGCTC 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 687
FaeI CATG 5 cut(s) 16, 35, 356, 691, 751
FatI CATG 5 cut(s) 12, 31, 352, 687, 747
FauI CCCGC 1 cut(s) 341
FauNDI CATATG 1 cut(s) 180
FbaI TGATCA 1 cut(s) 490
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 18, 527
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 2 cut(s) 18, 527
FspBI CTAG 4 cut(s) 54, 164, 423, 805
GluI GCNGC 2 cut(s) 18, 527
GsaI CCCAGC 1 cut(s) 642
GsuI CTGGAG 2 cut(s) 539, 638
HaeIII GGCC 1 cut(s) 740
HapII CCGG 2 cut(s) 268, 315
Hin1II CATG 5 cut(s) 16, 35, 356, 691, 751
HincII GTYRAC 2 cut(s) 82, 186
HindII GTYRAC 2 cut(s) 82, 186
HinfI GANTC 3 cut(s) 35, 731, 801
HpaII CCGG 2 cut(s) 268, 315
HphI GGTGA 1 cut(s) 692
Hpy166II GTNNAC 4 cut(s) 82, 186, 358, 790
Hpy188I TCNGA 4 cut(s) 142, 170, 676, 736
Hpy188III TCNNGA 9 cut(s) 32, 54, 67, 371, 437, 460, 590, 617, 776
Hpy8I GTNNAC 4 cut(s) 82, 186, 358, 790
Hpy99I CGWCG 3 cut(s) 86, 101, 348
HpyAV CCTTC 6 cut(s) 51, 52, 70, 496, 595, 671
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 2 cut(s) 209, 546
HpyF10VI GCNNNNNNNGC 5 cut(s) 226, 303, 415, 523, 558
HpyF3I CTNAG 6 cut(s) 253, 261, 726, 733, 782, 797
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 5 cut(s) 16, 35, 356, 691, 751
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 4 cut(s) 196, 376, 490, 671
LmnI GCTCC 6 cut(s) 160, 270, 317, 523, 619, 665
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 218
MaeI CTAG 4 cut(s) 54, 164, 423, 805
MaeII ACGT 1 cut(s) 395
MalI GATC 4 cut(s) 198, 378, 492, 673
MboI GATC 4 cut(s) 196, 376, 490, 671
MboII GAAGA 7 cut(s) 104, 167, 247, 493, 496, 511, 671
MflI RGATCY 2 cut(s) 376, 671
MhlI GDGCHC 1 cut(s) 687
MluCI AATT 1 cut(s) 204
MlyI GAGTC 2 cut(s) 29, 725
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 9 cut(s) 39, 122, 151, 367, 514, 528, 567, 586, 730
MseI TTAA 1 cut(s) 320
MslI CAYNNNNRTG 2 cut(s) 179, 692
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 2 cut(s) 268, 315
MspR9I CCNGG 1 cut(s) 651
MvaI CCWGG 1 cut(s) 651
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 5 cut(s) 226, 303, 415, 523, 558
NdeI CATATG 1 cut(s) 180
NdeII GATC 4 cut(s) 196, 376, 490, 671
NlaIII CATG 5 cut(s) 16, 35, 356, 691, 751
NlaIV GGNNCC 3 cut(s) 378, 525, 621
NspI RCATGY 1 cut(s) 356
PagI TCATGA 1 cut(s) 31
PceI AGGCCT 1 cut(s) 740
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PkrI GCNGC 2 cut(s) 19, 528
PleI GAGTC 2 cut(s) 29, 725
PpsI GAGTC 2 cut(s) 29, 725
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 638
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 378, 525, 621
PspPI GGNCC 2 cut(s) 587, 773
PsuI RGATCY 2 cut(s) 376, 671
RsaI GTAC 2 cut(s) 62, 328
RsaNI GTAC 2 cut(s) 61, 327
RseI CAYNNNNRTG 2 cut(s) 179, 692
SacI GAGCTC 1 cut(s) 687
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 2 cut(s) 18, 527
Sau3AI GATC 4 cut(s) 196, 376, 490, 671
Sau96I GGNCC 2 cut(s) 587, 773
SchI GAGTC 2 cut(s) 29, 725
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 1 cut(s) 687
SfaNI GCATC 1 cut(s) 218
SinI GGWCC 2 cut(s) 587, 773
SmiMI CAYNNNNRTG 2 cut(s) 179, 692
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 1 cut(s) 204
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 3 cut(s) 348, 527, 561
SspMI CTAG 4 cut(s) 54, 164, 423, 805
SstI GAGCTC 1 cut(s) 687
StuI AGGCCT 1 cut(s) 740
StyD4I CCNGG 1 cut(s) 649
TaiI ACGT 1 cut(s) 398
TaqI TCGA 3 cut(s) 81, 405, 436
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 529
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 2 cut(s) 252, 790
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 3 cut(s) 105, 672, 767
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 2 cut(s) 252, 790
VpaK11BI GGWCC 2 cut(s) 587, 773
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 4 cut(s) 54, 164, 423, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.