Rorug04G0292200

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013999
Physical Location & Seq
Forward (+)
46588786 .. 46590360
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0292200.1

Sequence Viewer

Length: 1035 bp
ATGCTTGAATTGGTTGGCCAATATGGGCCAGGTGTGGTAGCACCTACAAGCCAATTAATATCAGGTCGGTGTCTGCAGGAAGAAATTGCAACCATCAAAAACTACCTTGCTGAGTATAAGTCATCCTGGGCAATCACTGGTTGTTCTATAATGGCAGACAGTTGGCTAGACGCAGAGGGTAGAACACTGATCAATTTTTTAGCTTCTGGTCCAAATGGTGTATACTTTGTTCCTTCAGTTGATGCCACTGAAATAGTTAAAGATGCTTCAGAATTGTTTGAGCTGCTCGACAAAGTGGTTGAAGAGATGGGAGAGGAAAATGTAGTTCAGGTAATCACTCCAAATATTCCAAGTTATAAAGCTGCTGGGAAGATGCTTGAGGAGAAGAGAAAGAATTTGTTCTGGACTCCATGTGCCACCAATTGTATTGATCAAATTCTTAAACATTTGTCAGATATGCCTAGTGTAGCAGAGTGCATTAAGAAGAGCCAAAAGATTACAAACCTCATCTACAGCCAAATTTGGTTGTTAAATTTTATGAAGAATGGCTTTACTCAGGGGAAGGAACTTTTGAGGCCTTCCATTACCCAGTTTGCCTCTAGCTTTGCTACCTTACAAAGCTTGGTGGACCATAGGATTGGTCTTAGAAAAATGTTTCGATCAAACAAATGGATTTCATCTCATTGCTCCAGAGCACGTGAGGCGAAAGAGGTGGCAAATATTGTATCAGACGCAGGATTTTGGAAGAATTTACAGGTTGTTAGGAATTCTGTGGACCCAATGATGCAAGTTCTTCAAAAGGTTGAGAGTGGTGAGTGCTTGTCAGTGTCGTCTATCTACAATGATATGTCCACTACAAGTCTTGCAATCAAATCCATTTATGGTGAACATGAGCCAAACTGCGAACCAATTTGGGATGCCATCCAAAATCATTGGGACTCGTTAAACCACCCTGTATTTGTGGCAGCTTACTTCTTAAATCCATCTTATAGATATCGACCTGATTTTATGGCGATTTCAGTGGTTTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

344

Amino Acids

38.64

Weight (kDa)

5.76

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 15 - 166 1.5e-57 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25640 AT3G25640
fragaria_vesca FvH4_4g28270
malus_domestica MD13G1048700.v1.1 MD16G1050000.v1.1
prunus_persica Prupe.1G303400_v2.0.a1
pyrus_communis pycom16g04380
rosa_chinensis RchiOBHm_Chr4g0436141
rosa_laevigata RLG00000006537
rosa_multiflora Rmu_sc0022632.1_g000001
rosa_roxburghii Rroxscaffold_5G00377240
rosa_rugosa Rorug04G0292200
rosa_samantha Rh4AG346200 Rh4BG355300 Rh4CG369900 Rh4DG348900
rosa_wichuraiana Rw4G030270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AccI GTMKAC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 6 cut(s) 394, 435, 519, 532, 748, 766
AcuI CTGAAG 2 cut(s) 219, 252
AcvI CACGTG 1 cut(s) 698
AgsI TTSAA 3 cut(s) 8, 302, 797
AjnI CCWGG 2 cut(s) 28, 125
AluBI AGCT 6 cut(s) 203, 283, 362, 603, 621, 968
AluI AGCT 6 cut(s) 203, 283, 362, 603, 621, 968
Alw21I GWGCWC 1 cut(s) 697
AoxI GGCC 3 cut(s) 16, 26, 575
ApeKI GCWGC 3 cut(s) 283, 362, 965
ApoI RAATTY 6 cut(s) 394, 435, 519, 532, 748, 766
AseI ATTAAT 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 398
AspS9I GGNCC 4 cut(s) 26, 209, 628, 775
AsuHPI GGTGA 2 cut(s) 824, 896
AvaII GGWCC 3 cut(s) 209, 628, 775
BalI TGGCCA 1 cut(s) 18
BbrPI CACGTG 1 cut(s) 698
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 3 cut(s) 270, 349, 977
BccI CCATC 4 cut(s) 101, 301, 929, 991
BciT130I CCWGG 2 cut(s) 30, 127
BclI TGATCA 2 cut(s) 189, 430
BfaI CTAG 3 cut(s) 167, 462, 600
BfmI CTRYAG 2 cut(s) 74, 511
BisI GCNGC 3 cut(s) 284, 363, 966
BlsI GCNGC 3 cut(s) 285, 364, 967
Bme1390I CCNGG 2 cut(s) 30, 127
Bme18I GGWCC 3 cut(s) 209, 628, 775
BmgT120I GGNCC 4 cut(s) 26, 209, 628, 775
BmiI GGNNCC 1 cut(s) 777
BmrFI CCNGG 2 cut(s) 30, 127
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 5 cut(s) 232, 253, 363, 774, 907
BmuI ACTGGG 1 cut(s) 583
BpmI CTGGAG 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 398
BsaAI YACGTR 1 cut(s) 698
BsaJI CCNNGG 1 cut(s) 126
Bse1I ACTGG 2 cut(s) 142, 589
Bse3DI GCAATG 1 cut(s) 682
BseBI CCWGG 2 cut(s) 30, 127
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 3 cut(s) 122, 921, 922
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 2 cut(s) 102, 569
BseNI ACTGG 2 cut(s) 142, 589
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 3 cut(s) 270, 349, 977
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 3 cut(s) 18, 28, 577
BsiHKAI GWGCWC 1 cut(s) 697
BslFI GGGAC 1 cut(s) 950
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 3 cut(s) 18, 28, 577
Bsp1286I GDGCHC 1 cut(s) 697
Bsp143I GATC 3 cut(s) 189, 430, 659
BspANI GGCC 3 cut(s) 18, 28, 577
BspCNI CTCAG 2 cut(s) 103, 568
BspLI GGNNCC 1 cut(s) 777
BspMAI CTGCAG 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 682
BsrI ACTGG 2 cut(s) 142, 589
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 189, 430, 659
BssNAI GTATAC 1 cut(s) 223
Bst1107I GTATAC 1 cut(s) 223
Bst2UI CCWGG 2 cut(s) 30, 127
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 3 cut(s) 297, 380, 479
BstBAI YACGTR 1 cut(s) 698
BstDEI CTNAG 3 cut(s) 111, 555, 644
BstF5I GGATG 3 cut(s) 122, 921, 922
BstKTI GATC 3 cut(s) 192, 433, 662
BstMBI GATC 3 cut(s) 189, 430, 659
BstMWI GCNNNNNNNGC 1 cut(s) 701
BstNI CCWGG 2 cut(s) 30, 127
BstSCI CCNGG 2 cut(s) 28, 125
BstSFI CTRYAG 2 cut(s) 74, 511
BstV1I GCAGC 3 cut(s) 270, 349, 977
BstXI CCANNNNNNTGG 1 cut(s) 638
BstZ17I GTATAC 1 cut(s) 223
BsuRI GGCC 3 cut(s) 18, 28, 577
BtsCI GGATG 3 cut(s) 122, 921, 922
BtsIMutI CAGTG 5 cut(s) 135, 185, 246, 831, 1026
Cfr13I GGNCC 4 cut(s) 26, 209, 628, 775
CseI GACGC 2 cut(s) 179, 740
CviAII CATG 2 cut(s) 411, 890
DdeI CTNAG 3 cut(s) 111, 555, 644
DpnI GATC 3 cut(s) 191, 432, 661
DpnII GATC 3 cut(s) 189, 430, 659
EaeI YGGCCR 1 cut(s) 16
Eam1104I CTCTTC 3 cut(s) 297, 380, 479
EarI CTCTTC 3 cut(s) 297, 380, 479
Eco147I AGGCCT 1 cut(s) 577
Eco32I GATATC 1 cut(s) 995
Eco47I GGWCC 3 cut(s) 209, 628, 775
Eco57I CTGAAG 2 cut(s) 219, 252
Eco72I CACGTG 1 cut(s) 698
EcoRI GAATTC 1 cut(s) 766
EcoRII CCWGG 2 cut(s) 28, 125
EcoRV GATATC 1 cut(s) 995
FaeI CATG 2 cut(s) 414, 893
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 1 cut(s) 950
FatI CATG 2 cut(s) 410, 889
FbaI TGATCA 2 cut(s) 189, 430
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 284, 363, 966
FokI GGATG 3 cut(s) 109, 908, 929
Fsp4HI GCNGC 3 cut(s) 284, 363, 966
FspBI CTAG 3 cut(s) 167, 462, 600
GluI GCNGC 3 cut(s) 284, 363, 966
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 673
HaeIII GGCC 3 cut(s) 18, 28, 577
HgaI GACGC 2 cut(s) 179, 740
Hin1II CATG 2 cut(s) 414, 893
HindIII AAGCTT 1 cut(s) 619
HinfI GANTC 2 cut(s) 406, 938
HphI GGTGA 2 cut(s) 824, 896
Hpy166II GTNNAC 5 cut(s) 223, 628, 775, 852, 887
Hpy188I TCNGA 3 cut(s) 271, 454, 730
Hpy188III TCNNGA 2 cut(s) 403, 690
Hpy8I GTNNAC 5 cut(s) 223, 628, 775, 852, 887
HpyAV CCTTC 3 cut(s) 243, 556, 588
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 5 cut(s) 76, 89, 477, 787, 866
HpyF10VI GCNNNNNNNGC 1 cut(s) 701
HpyF3I CTNAG 3 cut(s) 111, 555, 644
HpySE526I ACGT 1 cut(s) 697
Hsp92II CATG 2 cut(s) 414, 893
Ksp22I TGATCA 2 cut(s) 189, 430
Kzo9I GATC 3 cut(s) 189, 430, 659
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 1 cut(s) 692
Lsp1109I GCAGC 3 cut(s) 270, 349, 977
LweI GCATC 5 cut(s) 232, 253, 363, 774, 907
MaeI CTAG 3 cut(s) 167, 462, 600
MaeII ACGT 1 cut(s) 697
MalI GATC 3 cut(s) 191, 432, 661
MboI GATC 3 cut(s) 189, 430, 659
MboII GAAGA 8 cut(s) 92, 314, 382, 397, 496, 553, 757, 785
MfeI CAATTG 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 697
MlsI TGGCCA 1 cut(s) 18
MluNI TGGCCA 1 cut(s) 18
MlyI GAGTC 2 cut(s) 400, 932
MnlI CCTC 8 cut(s) 169, 307, 373, 515, 567, 607, 694, 703
Mox20I TGGCCA 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 398
MscI TGGCCA 1 cut(s) 18
MseI TTAA 7 cut(s) 56, 258, 441, 480, 530, 944, 977
Msp20I TGGCCA 1 cut(s) 18
MspR9I CCNGG 2 cut(s) 30, 127
MunI CAATTG 1 cut(s) 421
MvaI CCWGG 2 cut(s) 30, 127
MwoI GCNNNNNNNGC 1 cut(s) 701
NdeII GATC 3 cut(s) 189, 430, 659
NlaIII CATG 2 cut(s) 414, 893
NlaIV GGNNCC 1 cut(s) 777
PceI AGGCCT 1 cut(s) 577
PciSI GCTCTTC 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 398
PkrI GCNGC 3 cut(s) 285, 364, 967
PleI GAGTC 2 cut(s) 400, 932
PmaCI CACGTG 1 cut(s) 698
PmlI CACGTG 1 cut(s) 698
PpsI GAGTC 2 cut(s) 400, 932
Ppu21I YACGTR 1 cut(s) 698
PshBI ATTAAT 1 cut(s) 56
PsiI TTATAA 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 28, 125
PspCI CACGTG 1 cut(s) 698
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 2 cut(s) 28, 125
PspN4I GGNNCC 1 cut(s) 777
PspPI GGNCC 4 cut(s) 26, 209, 628, 775
PsrI GAACNNNNNNTAC 2 cut(s) 213, 245
PstI CTGCAG 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 479
SaqAI TTAA 7 cut(s) 56, 258, 441, 480, 530, 944, 977
SatI GCNGC 3 cut(s) 284, 363, 966
Sau3AI GATC 3 cut(s) 189, 430, 659
Sau96I GGNCC 4 cut(s) 26, 209, 628, 775
SchI GAGTC 2 cut(s) 400, 932
ScrFI CCNGG 2 cut(s) 30, 127
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 5 cut(s) 232, 253, 363, 774, 907
SfcI CTRYAG 2 cut(s) 74, 511
SinI GGWCC 3 cut(s) 209, 628, 775
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SseBI AGGCCT 1 cut(s) 577
SspI AATATT 2 cut(s) 346, 721
SspMI CTAG 3 cut(s) 167, 462, 600
StuI AGGCCT 1 cut(s) 577
StyD4I CCNGG 2 cut(s) 28, 125
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 700
TaqI TCGA 3 cut(s) 288, 658, 997
Tru1I TTAA 7 cut(s) 56, 258, 441, 480, 530, 944, 977
Tru9I TTAA 7 cut(s) 56, 258, 441, 480, 530, 944, 977
TscAI CASTG 5 cut(s) 142, 192, 253, 831, 1026
TseI GCWGC 3 cut(s) 283, 362, 965
TspDTI ATGAA 2 cut(s) 554, 666
TspRI CASTG 5 cut(s) 142, 192, 253, 831, 1026
VpaK11BI GGWCC 3 cut(s) 209, 628, 775
VspI ATTAAT 1 cut(s) 56
XapI RAATTY 6 cut(s) 394, 435, 519, 532, 748, 766
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 3 cut(s) 167, 462, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.