Prupe.1G311500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015056
Physical Location & Seq
Reverse (-)
30237312 .. 30238000
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G311500.1

Sequence Viewer

Length: 384 bp
ATGAAGAGGCAAAGACGTGTGGATGTTGGTGGTGCCACCATGGATCAAGGATCAAGGTTTGAGGGTACAACAGCAACAACAACAACAACAATGACAATGGCAAGCAAGAAGGCTAAGAAAACGATTGACAAGGCTGCAGGGAAAGAAGATGTGAGGATCGACGGTGGAAATCATCAGTTGGGTTTGGTGGCCGCTGAGAATTTGATGGCCGGGGAGGAGAATTACTGGGGTTGTTTGAGTGGTGCTGTGGTGGATGAGCAAATGTCATGGGGTTCAATTTGGATGCCATTTTGGGATGTGGAGTTCATGGGCGAAGCTCATTATGGCTTGTTCAGTGATGTGATTTGGGATGATGACATTTGGGGGTTAAGAACCACCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.1

Weight (kDa)

4.95

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25422 AT1G68500
fragaria_vesca FvH4_4g27340
malus_domestica MD13G1041700.v1.1 MD16G1042600.v1.1
prunus_persica Prupe.1G311500_v2.0.a1
pyrus_communis pycom13g03610
rosa_chinensis RchiOBHm_Chr4g0435141
rosa_laevigata RLG00000006616
rosa_multiflora Rmu_ssc0000339.1_g000038
rosa_roxburghii Rroxscaffold_5G00376360
rosa_rugosa Rorug04G0282600
rosa_samantha Rh4BG346400 Rh4CG360900 Rh4DG340800
rosa_wichuraiana Rw4G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 1 cut(s) 192
AclWI GGATC 3 cut(s) 51, 58, 164
AcoI YGGCCR 2 cut(s) 189, 207
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 276
AjiI CACGTC 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
AlwI GGATC 3 cut(s) 51, 58, 164
AoxI GGCC 2 cut(s) 189, 207
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 211
BanI GGYRCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 199
BcnI CCSGG 1 cut(s) 211
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 135, 192
BlsI GCNGC 2 cut(s) 136, 193
Bme1390I CCNGG 1 cut(s) 211
BmgBI CACGTC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 39, 210
Bse1I ACTGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 39, 210
BseGI GGATG 5 cut(s) 28, 259, 288, 301, 355
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 2 cut(s) 191, 209
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 210
BsnI GGCC 2 cut(s) 191, 209
Bsp143I GATC 3 cut(s) 43, 50, 156
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 191, 209
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 139
BspPI GGATC 3 cut(s) 51, 58, 164
BspT107I GGYRCC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 39, 210
BssMI GATC 3 cut(s) 43, 50, 156
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 114, 195
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 5 cut(s) 28, 259, 288, 301, 355
BstKTI GATC 3 cut(s) 46, 53, 159
BstMBI GATC 3 cut(s) 43, 50, 156
BstSCI CCNGG 1 cut(s) 209
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 2 cut(s) 191, 209
BtgI CCRYGG 1 cut(s) 39
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 5 cut(s) 28, 259, 288, 301, 355
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 66
CviAII CATG 3 cut(s) 40, 267, 307
CviJI RGCY 6 cut(s) 113, 134, 191, 209, 317, 327
CviKI_1 RGCY 6 cut(s) 113, 134, 191, 209, 317, 327
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 2 cut(s) 114, 195
DpnI GATC 3 cut(s) 45, 52, 158
DpnII GATC 3 cut(s) 43, 50, 156
EaeI YGGCCR 2 cut(s) 189, 207
Eco130I CCWWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 3 cut(s) 43, 270, 310
FaiI YATR 4 cut(s) 41, 268, 308, 324
FatI CATG 3 cut(s) 39, 266, 306
Fnu4HI GCNGC 2 cut(s) 135, 192
FokI GGATG 5 cut(s) 35, 266, 295, 308, 362
Fsp4HI GCNGC 2 cut(s) 135, 192
GluI GCNGC 2 cut(s) 135, 192
HaeIII GGCC 2 cut(s) 191, 209
HapII CCGG 1 cut(s) 210
Hin1II CATG 3 cut(s) 43, 270, 310
HpaII CCGG 1 cut(s) 210
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 114, 195
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 3 cut(s) 43, 270, 310
Kzo9I GATC 3 cut(s) 43, 50, 156
LpnPI CCDG 3 cut(s) 123, 211, 223
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 273
MaeII ACGT 1 cut(s) 16
MalI GATC 3 cut(s) 45, 52, 158
MboI GATC 3 cut(s) 43, 50, 156
MboII GAAGA 2 cut(s) 16, 158
MluCI AATT 3 cut(s) 199, 220, 276
MnlI CCTC 3 cut(s) 55, 147, 208
MseI TTAA 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 211
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 39
NdeII GATC 3 cut(s) 43, 50, 156
NlaIII CATG 3 cut(s) 43, 270, 310
NlaIV GGNNCC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 136, 193
PspN4I GGNNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 139
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 2 cut(s) 135, 192
Sau3AI GATC 3 cut(s) 43, 50, 156
ScrFI CCNGG 1 cut(s) 211
SetI ASST 3 cut(s) 19, 59, 319
SfaNI GCATC 1 cut(s) 273
SfcI CTRYAG 1 cut(s) 135
Sse9I AATT 3 cut(s) 199, 220, 276
SsiI CCGC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 159
TasI AATT 3 cut(s) 199, 220, 276
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 1 cut(s) 340
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 17, 295
TspRI CASTG 1 cut(s) 340
XapI RAATTY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.