pycom13g03610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015056
Physical Location & Seq
Forward (+)
2396902 .. 2398378
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03610.2

Sequence Viewer

Length: 519 bp
ATGCAAGCCACTACGACAACGAGATGTTTTCACTGTCACGAACAGAAAGACAGAGACCATTTTAACCCAAAGTTGTTCTGTGTTTTTTTTTTTTTTTTGGAGAGATCAAATTCACCAGGAGAAATGAAGAGGCGGAGACGTAATGGCGGAGGCGGCGCCGGCGTTGATCAAGCTCCGAGTTTTGAAGTTACAACGACAAAAACAGCGGCGGCTGCGAGCAAGAAGGGTAAGAAAACTATCGACAAGAGCGTGAAAGAAGAGGCGAGGATCGACGGCGGCGATGATCAGCAATTGGGTTTGGTGGCGGCTGATCAGAATCTTATGGCTGGGGATGAGAATTACTGGGGGAATTTGGGTGGTGGTGTTGCGGTGGATGAGCAAATGTCCTGGGGGTCCGTTTGGTTGCCACTTTGGGATGTTGAGTTTATGGAAGAGTCGCATTACCGATTGTTTAGTGATGTGATTTGGGACGATGACATTTGGGGATTAAGAACCACAAAAGAGATCCCAAATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.38

Weight (kDa)

5.24

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25422 AT1G68500
fragaria_vesca FvH4_4g27340
malus_domestica MD13G1041700.v1.1 MD16G1042600.v1.1
prunus_persica Prupe.1G311500_v2.0.a1
pyrus_communis pycom13g03610
rosa_chinensis RchiOBHm_Chr4g0435141
rosa_laevigata RLG00000006616
rosa_multiflora Rmu_ssc0000339.1_g000038
rosa_roxburghii Rroxscaffold_5G00376360
rosa_rugosa Rorug04G0282600
rosa_samantha Rh4BG346400 Rh4CG360900 Rh4DG340800
rosa_wichuraiana Rw4G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 8 cut(s) 133, 147, 153, 206, 209, 276, 305, 368
AclWI GGATC 2 cut(s) 275, 499
AcsI RAATTY 2 cut(s) 109, 349
AcyI GRCGYC 1 cut(s) 156
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 2 cut(s) 115, 386
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw26I GTCTC 2 cut(s) 48, 130
AlwI GGATC 2 cut(s) 275, 499
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 109, 349
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 105
AvaII GGWCC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 2 cut(s) 117, 388
BclI TGATCA 3 cut(s) 166, 283, 310
BcoDI GTCTC 2 cut(s) 48, 130
BfoI RGCGCY 1 cut(s) 159
BisI GCNGC 6 cut(s) 154, 207, 210, 213, 277, 306
BlsI GCNGC 6 cut(s) 155, 208, 211, 214, 278, 307
Bme1390I CCNGG 2 cut(s) 117, 388
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 2 cut(s) 157, 394
BmrFI CCNGG 2 cut(s) 117, 388
BmrI ACTGGG 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 352
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 387
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 2 cut(s) 117, 388
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 3 cut(s) 337, 379, 421
BseJI GATNNNNATC 1 cut(s) 315
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 326
BshNI GGYRCC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 482
BsmAI GTCTC 2 cut(s) 48, 130
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 482
Bso31I GGTCTC 1 cut(s) 48
Bsp143I GATC 6 cut(s) 104, 166, 267, 283, 310, 504
BspACI CCGC 8 cut(s) 133, 147, 153, 206, 209, 276, 305, 368
BspLI GGNNCC 2 cut(s) 157, 394
BspPI GGATC 2 cut(s) 275, 499
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 6 cut(s) 104, 166, 267, 283, 310, 504
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 117, 388
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 3 cut(s) 122, 252, 426
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 6, 160, 217
BstF5I GGATG 3 cut(s) 337, 379, 421
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 6 cut(s) 107, 169, 270, 286, 313, 507
BstMAI GTCTC 2 cut(s) 48, 130
BstMBI GATC 6 cut(s) 104, 166, 267, 283, 310, 504
BstMWI GCNNNNNNNGC 3 cut(s) 153, 159, 212
BstNI CCWGG 2 cut(s) 117, 388
BstSCI CCNGG 2 cut(s) 115, 386
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 504
BstYI RGATCY 1 cut(s) 504
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 337, 379, 421
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 3 cut(s) 6, 160, 217
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 393
CviJI RGCY 5 cut(s) 8, 173, 212, 308, 326
CviKI_1 RGCY 5 cut(s) 8, 173, 212, 308, 326
DinI GGCGCC 1 cut(s) 157
DpnI GATC 6 cut(s) 106, 168, 269, 285, 312, 506
DpnII GATC 6 cut(s) 104, 166, 267, 283, 310, 504
Eam1104I CTCTTC 3 cut(s) 122, 252, 426
EarI CTCTTC 3 cut(s) 122, 252, 426
EciI GGCGGA 2 cut(s) 148, 162
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 115, 386
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 130
FaiI YATR 2 cut(s) 323, 428
FaqI GGGAC 1 cut(s) 482
FbaI TGATCA 3 cut(s) 166, 283, 310
Fnu4HI GCNGC 6 cut(s) 154, 207, 210, 213, 277, 306
FokI GGATG 3 cut(s) 344, 386, 428
Fsp4HI GCNGC 6 cut(s) 154, 207, 210, 213, 277, 306
GlaI GCGC 1 cut(s) 157
GluI GCNGC 6 cut(s) 154, 207, 210, 213, 277, 306
GsaI CCCAGC 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 159
HapII CCGG 1 cut(s) 159
HhaI GCGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 2 cut(s) 316, 434
HpaII CCGG 1 cut(s) 159
HphI GGTGA 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 177, 315
Hpy188III TCNNGA 1 cut(s) 38
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 159, 212
HpySE526I ACGT 1 cut(s) 139
Hsp92I GRCGYC 1 cut(s) 156
HspAI GCGC 1 cut(s) 156
KasI GGCGCC 1 cut(s) 155
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Ksp22I TGATCA 3 cut(s) 166, 283, 310
Kzo9I GATC 6 cut(s) 104, 166, 267, 283, 310, 504
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 7 cut(s) 102, 129, 172, 312, 328, 373, 400
Lsp1109I GCAGC 1 cut(s) 199
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 2 cut(s) 35, 187
MalI GATC 6 cut(s) 106, 168, 269, 285, 312, 506
MboI GATC 6 cut(s) 104, 166, 267, 283, 310, 504
MboII GAAGA 3 cut(s) 139, 269, 443
MfeI CAATTG 1 cut(s) 290
MflI RGATCY 1 cut(s) 504
MluCI AATT 4 cut(s) 109, 290, 337, 349
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 443
MnlI CCTC 4 cut(s) 123, 143, 253, 258
MreI CGCCGGCG 1 cut(s) 158
MroNI GCCGGC 1 cut(s) 158
MseI TTAA 2 cut(s) 63, 488
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 117, 388
MunI CAATTG 1 cut(s) 290
MvaI CCWGG 2 cut(s) 117, 388
MwoI GCNNNNNNNGC 3 cut(s) 153, 159, 212
NaeI GCCGGC 1 cut(s) 160
NarI GGCGCC 1 cut(s) 156
NdeII GATC 6 cut(s) 104, 166, 267, 283, 310, 504
NgoMIV GCCGGC 1 cut(s) 158
NlaIV GGNNCC 2 cut(s) 157, 394
NmuCI GTSAC 1 cut(s) 35
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 276
PdiI GCCGGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 6 cut(s) 155, 208, 211, 214, 278, 307
PleI GAGTC 1 cut(s) 442
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 442
Psp6I CCWGG 2 cut(s) 115, 386
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 2 cut(s) 115, 386
PspN4I GGNNCC 2 cut(s) 157, 394
PspPI GGNCC 1 cut(s) 393
PsuI RGATCY 1 cut(s) 504
SaqAI TTAA 2 cut(s) 63, 488
SatI GCNGC 6 cut(s) 154, 207, 210, 213, 277, 306
Sau3AI GATC 6 cut(s) 104, 166, 267, 283, 310, 504
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 2 cut(s) 117, 388
SetI ASST 2 cut(s) 142, 175
SfoI GGCGCC 1 cut(s) 157
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 1 cut(s) 393
Sse9I AATT 4 cut(s) 109, 290, 337, 349
SsiI CCGC 8 cut(s) 133, 147, 153, 206, 209, 276, 305, 368
SspDI GGCGCC 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 115, 386
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 240, 270
TasI AATT 4 cut(s) 109, 290, 337, 349
TauI GCSGC 5 cut(s) 156, 209, 212, 279, 308
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 2 cut(s) 63, 488
Tru9I TTAA 2 cut(s) 63, 488
TscAI CASTG 1 cut(s) 38
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 2 cut(s) 385, 504
TspRI CASTG 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 2 cut(s) 109, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.