Rh4DG340800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015056
Physical Location & Seq
Forward (+)
56299607 .. 56300050
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG340800.1

Sequence Viewer

Length: 444 bp
ATGAAGAGGCAGAGACGTGTAGATCATGGTGGTGGTGCTACCGCGGAAGCTCCAAAGCTTGACGCTGCAACAATGTCAATGCCGAGCAAGAAGCCCCAGATCAGAGCCGCTGCCAAGGTGAAAGAAGAGGCGGCCATCAAAGTGGAAAATGTGAGTCTTGATGGTGGAAACGATCAAATGGTGGCGGCTCAGGTTGCGATGGCGGCGGCGGAGGAGGAGAATTACTCGTGTAGTCATGGGTCAGTTTGGTTGGATGAGCAAATGTCATGGGGGTCAGTTTGGTTGGATGAGCAAATGTCATGGGGGTCAGTTTGGTCACCATTGTGGGATGTGGAGTTCATGGGTGAAGCACACTATGGATTGTTTAGTGATCATGTGGTTTGGGATGATGATATTTGGGGATTAAGGACCACCAGCAAGGAGATTCCAATTTCGAACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.33

Weight (kDa)

4.82

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25422 AT1G68500
fragaria_vesca FvH4_4g27340
malus_domestica MD13G1041700.v1.1 MD16G1042600.v1.1
prunus_persica Prupe.1G311500_v2.0.a1
pyrus_communis pycom13g03610
rosa_chinensis RchiOBHm_Chr4g0435141
rosa_laevigata RLG00000006616
rosa_multiflora Rmu_ssc0000339.1_g000038
rosa_roxburghii Rroxscaffold_5G00376360
rosa_rugosa Rorug04G0282600
rosa_samantha Rh4BG346400 Rh4CG360900 Rh4DG340800
rosa_wichuraiana Rw4G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 8 cut(s) 42, 44, 108, 131, 185, 203, 206, 209
AcoI YGGCCR 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 16
AjiI CACGTC 1 cut(s) 17
AleI CACNNNNGTG 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 50, 58
AluI AGCT 2 cut(s) 50, 58
Alw26I GTCTC 1 cut(s) 7
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 65, 110
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 3 cut(s) 130, 309, 356
AsuII TTCGAA 1 cut(s) 434
AvaII GGWCC 1 cut(s) 408
BauI CACGAG 1 cut(s) 226
BbvI GCAGC 2 cut(s) 52, 97
BccI CCATC 3 cut(s) 143, 155, 193
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 7
BisI GCNGC 7 cut(s) 66, 108, 111, 132, 186, 204, 207
BlsI GCNGC 7 cut(s) 67, 109, 112, 133, 187, 205, 208
Bme18I GGWCC 1 cut(s) 408
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 408
BplI GAGNNNNNCTC 2 cut(s) 209, 241
Bpu10I CCTNAGC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 42, 114
BseDI CCNNGG 2 cut(s) 42, 114
BseGI GGATG 4 cut(s) 259, 292, 334, 391
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 227, 230
BseXI GCAGC 2 cut(s) 52, 97
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 7
BsmBI CGTCTC 1 cut(s) 7
BsnI GGCC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 434
Bsp143I GATC 4 cut(s) 22, 99, 172, 370
BspACI CCGC 8 cut(s) 42, 44, 108, 131, 185, 203, 206, 209
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 434
BssECI CCNNGG 2 cut(s) 42, 114
BssMI GATC 4 cut(s) 22, 99, 172, 370
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 120
BstBI TTCGAA 1 cut(s) 434
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 315
BstF5I GGATG 4 cut(s) 259, 292, 334, 391
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 4 cut(s) 25, 102, 175, 373
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 4 cut(s) 22, 99, 172, 370
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstPI GGTNACC 1 cut(s) 315
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 52, 97
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 212
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 4 cut(s) 259, 292, 334, 391
Cfr13I GGNCC 1 cut(s) 408
Cfr42I CCGCGG 1 cut(s) 45
CseI GACGC 1 cut(s) 71
CviAII CATG 6 cut(s) 26, 236, 267, 300, 340, 374
CviJI RGCY 6 cut(s) 50, 58, 94, 107, 134, 188
CviKI_1 RGCY 6 cut(s) 50, 58, 94, 107, 134, 188
DdeI CTNAG 1 cut(s) 189
DpnI GATC 4 cut(s) 24, 101, 174, 372
DpnII GATC 4 cut(s) 22, 99, 172, 370
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 408
Eco91I GGTNACC 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 6 cut(s) 29, 239, 270, 303, 343, 377
FaiI YATR 7 cut(s) 27, 237, 268, 301, 341, 357, 375
FatI CATG 6 cut(s) 25, 235, 266, 299, 339, 373
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 7 cut(s) 66, 108, 111, 132, 186, 204, 207
FokI GGATG 4 cut(s) 266, 299, 341, 398
Fsp4HI GCNGC 7 cut(s) 66, 108, 111, 132, 186, 204, 207
GluI GCNGC 7 cut(s) 66, 108, 111, 132, 186, 204, 207
HaeIII GGCC 1 cut(s) 134
HgaI GACGC 1 cut(s) 71
Hin1II CATG 6 cut(s) 29, 239, 270, 303, 343, 377
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 154, 424
HphI GGTGA 3 cut(s) 130, 309, 356
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 6 cut(s) 29, 239, 270, 303, 343, 377
Ksp22I TGATCA 1 cut(s) 370
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 4 cut(s) 22, 99, 172, 370
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 110, 176, 427
Lsp1109I GCAGC 2 cut(s) 52, 97
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 315
MalI GATC 4 cut(s) 24, 101, 174, 372
MboI GATC 4 cut(s) 22, 99, 172, 370
MboII GAAGA 2 cut(s) 16, 137
MluCI AATT 2 cut(s) 220, 429
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 2 cut(s) 231, 264
MnlI CCTC 3 cut(s) 121, 205, 208
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 3 cut(s) 30, 140, 322
MspA1I CMGCKG 2 cut(s) 44, 110
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NdeII GATC 4 cut(s) 22, 99, 172, 370
NlaIII CATG 6 cut(s) 29, 239, 270, 303, 343, 377
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 315
NspV TTCGAA 1 cut(s) 434
OliI CACNNNNGTG 1 cut(s) 322
PfeI GAWTC 1 cut(s) 424
PkrI GCNGC 7 cut(s) 67, 109, 112, 133, 187, 205, 208
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 408
RseI CAYNNNNRTG 3 cut(s) 30, 140, 322
SacII CCGCGG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 7 cut(s) 66, 108, 111, 132, 186, 204, 207
Sau3AI GATC 4 cut(s) 22, 99, 172, 370
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 1 cut(s) 163
SetI ASST 5 cut(s) 19, 52, 60, 120, 195
Sfr303I CCGCGG 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 434
SgrBI CCGCGG 1 cut(s) 45
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 3 cut(s) 30, 140, 322
Sse9I AATT 2 cut(s) 220, 429
SsiI CCGC 8 cut(s) 42, 44, 108, 131, 185, 203, 206, 209
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 434
TasI AATT 2 cut(s) 220, 429
TauI GCSGC 5 cut(s) 110, 134, 188, 206, 209
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 2 cut(s) 65, 110
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 2 cut(s) 17, 328
VpaK11BI GGWCC 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.