RLG00000006616

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015056
Physical Location & Seq
Reverse (-)
9083204 .. 9083617
414 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006616

Sequence Viewer

Length: 414 bp
ATGAAGAGGCAGAGACGTGTAGATCATGGTGGTGGTGCTACCGCGGAAGCTCCAAAGCTTGACGCTGCAACAATGTCAATGCCGAGCAAGAAGCCCAAGATCAGAGCCGCTGCCAAGGTGAAAGAAGAGGCGGCCATCAAAGTGGAAAATGTGAGTCTTGATGGTGGAAACGATCAAATGGTGGCGGCTCAGGTTGCGAGGGCGGCGGCGGCGGAGGAGGAGAATTACTTGTGTAGTGATGGGTCAGTTTGGTTGGATGAGCAAATGTCATGGGGGTCAGTTTGGTCACCATTGTGGGATGTGGAGTTCATGGGTGAAGCACACTATGGATTGTTTAGTGATCATGTGGTTTGGGATGATGATATTTGGGGATTAAGGACCACCAGCAAGGAGATTCCAATTTCGAACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.11

Weight (kDa)

5.04

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25422 AT1G68500
fragaria_vesca FvH4_4g27340
malus_domestica MD13G1041700.v1.1 MD16G1042600.v1.1
prunus_persica Prupe.1G311500_v2.0.a1
pyrus_communis pycom13g03610
rosa_chinensis RchiOBHm_Chr4g0435141
rosa_laevigata RLG00000006616
rosa_multiflora Rmu_ssc0000339.1_g000038
rosa_roxburghii Rroxscaffold_5G00376360
rosa_rugosa Rorug04G0282600
rosa_samantha Rh4BG346400 Rh4CG360900 Rh4DG340800
rosa_wichuraiana Rw4G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 9 cut(s) 42, 44, 108, 131, 185, 203, 206, 209, 212
AcoI YGGCCR 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 16
AjiI CACGTC 1 cut(s) 17
AleI CACNNNNGTG 1 cut(s) 292
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 2 cut(s) 50, 58
AluI AGCT 2 cut(s) 50, 58
Alw26I GTCTC 1 cut(s) 7
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 65, 110
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 3 cut(s) 130, 279, 326
AsuII TTCGAA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 52, 97
BccI CCATC 3 cut(s) 143, 155, 233
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 7
BisI GCNGC 8 cut(s) 66, 108, 111, 132, 186, 204, 207, 210
BlsI GCNGC 8 cut(s) 67, 109, 112, 133, 187, 205, 208, 211
Bme18I GGWCC 1 cut(s) 378
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 42, 114
BseDI CCNNGG 2 cut(s) 42, 114
BseGI GGATG 3 cut(s) 262, 304, 361
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 230, 233
BseXI GCAGC 2 cut(s) 52, 97
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 7
BsmBI CGTCTC 1 cut(s) 7
BsnI GGCC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 404
Bsp143I GATC 4 cut(s) 22, 99, 172, 340
BspACI CCGC 9 cut(s) 42, 44, 108, 131, 185, 203, 206, 209, 212
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 404
BssECI CCNNGG 2 cut(s) 42, 114
BssMI GATC 4 cut(s) 22, 99, 172, 340
BssT1I CCWWGG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 120
BstBI TTCGAA 1 cut(s) 404
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 285
BstF5I GGATG 3 cut(s) 262, 304, 361
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 4 cut(s) 25, 102, 175, 343
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 4 cut(s) 22, 99, 172, 340
BstMWI GCNNNNNNNGC 3 cut(s) 194, 203, 209
BstPI GGTNACC 1 cut(s) 285
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 52, 97
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 3 cut(s) 262, 304, 361
Cfr13I GGNCC 1 cut(s) 378
Cfr42I CCGCGG 1 cut(s) 45
CseI GACGC 1 cut(s) 71
CviAII CATG 4 cut(s) 26, 270, 310, 344
CviJI RGCY 6 cut(s) 50, 58, 94, 107, 134, 188
CviKI_1 RGCY 6 cut(s) 50, 58, 94, 107, 134, 188
DdeI CTNAG 1 cut(s) 189
DpnI GATC 4 cut(s) 24, 101, 174, 342
DpnII GATC 4 cut(s) 22, 99, 172, 340
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 285
EcoO65I GGTNACC 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 4 cut(s) 29, 273, 313, 347
FaiI YATR 5 cut(s) 27, 271, 311, 327, 345
FatI CATG 4 cut(s) 25, 269, 309, 343
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 8 cut(s) 66, 108, 111, 132, 186, 204, 207, 210
FokI GGATG 3 cut(s) 269, 311, 368
Fsp4HI GCNGC 8 cut(s) 66, 108, 111, 132, 186, 204, 207, 210
GluI GCNGC 8 cut(s) 66, 108, 111, 132, 186, 204, 207, 210
HaeIII GGCC 1 cut(s) 134
HgaI GACGC 1 cut(s) 71
Hin1II CATG 4 cut(s) 29, 273, 313, 347
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 154, 394
HphI GGTGA 3 cut(s) 130, 279, 326
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 203, 209
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 4 cut(s) 29, 273, 313, 347
Ksp22I TGATCA 1 cut(s) 340
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 4 cut(s) 22, 99, 172, 340
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 176, 397
Lsp1109I GCAGC 2 cut(s) 52, 97
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 285
MalI GATC 4 cut(s) 24, 101, 174, 342
MboI GATC 4 cut(s) 22, 99, 172, 340
MboII GAAGA 2 cut(s) 16, 137
MluCI AATT 2 cut(s) 223, 399
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 4 cut(s) 121, 192, 208, 211
MseI TTAA 1 cut(s) 374
MslI CAYNNNNRTG 3 cut(s) 30, 140, 292
MspA1I CMGCKG 2 cut(s) 44, 110
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 194, 203, 209
NdeII GATC 4 cut(s) 22, 99, 172, 340
NlaIII CATG 4 cut(s) 29, 273, 313, 347
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 285
NspV TTCGAA 1 cut(s) 404
OliI CACNNNNGTG 1 cut(s) 292
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 8 cut(s) 67, 109, 112, 133, 187, 205, 208, 211
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 378
RseI CAYNNNNRTG 3 cut(s) 30, 140, 292
SacII CCGCGG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 8 cut(s) 66, 108, 111, 132, 186, 204, 207, 210
Sau3AI GATC 4 cut(s) 22, 99, 172, 340
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 1 cut(s) 163
SetI ASST 5 cut(s) 19, 52, 60, 120, 195
Sfr303I CCGCGG 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 404
SgrBI CCGCGG 1 cut(s) 45
SinI GGWCC 1 cut(s) 378
SmiMI CAYNNNNRTG 3 cut(s) 30, 140, 292
Sse9I AATT 2 cut(s) 223, 399
SsiI CCGC 9 cut(s) 42, 44, 108, 131, 185, 203, 206, 209, 212
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 404
TasI AATT 2 cut(s) 223, 399
TauI GCSGC 6 cut(s) 110, 134, 188, 206, 209, 212
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 2 cut(s) 65, 110
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 17, 298
VpaK11BI GGWCC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.