Rh4BG346400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015056
Physical Location & Seq
Forward (+)
50887412 .. 50887822
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG346400.1

Sequence Viewer

Length: 411 bp
ATGAAGAGGCAGAGACGTGTAGATCATGGTGGTGGTGCTACCGCGGAAGCTCCAAAGCTTGACGCTGCAACAATGTCAATGCCGCGCAAGAAGCCCAAGATCAGAGCCGCTGCCAAGGTGAAAGAAGAGGCGGCCATCAAAGTGGAAAATGTGAGTCTTGATGGTGGAAACGATCAAATGGTGGCGGCTCAGGTTGCGATGGCGGCGGCGGAGGAGGAGAATTACTCGTGTAGTGATGGGTCAGTTTGGTTGGATGAGCAAATGTCATGGGGGTCAGTTTGGTCACCATTGTGGGATGTGGAGTTCATGGGTGAAGCACACTATGGATTGTTTAGTGATCATGTGGTTTGGGATGATGATATTTGGGGATTAAGGACCACCAGCAAGGAGATTCCAATTTCGAACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.05

Weight (kDa)

5.04

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25422 AT1G68500
fragaria_vesca FvH4_4g27340
malus_domestica MD13G1041700.v1.1 MD16G1042600.v1.1
prunus_persica Prupe.1G311500_v2.0.a1
pyrus_communis pycom13g03610
rosa_chinensis RchiOBHm_Chr4g0435141
rosa_laevigata RLG00000006616
rosa_multiflora Rmu_ssc0000339.1_g000038
rosa_roxburghii Rroxscaffold_5G00376360
rosa_rugosa Rorug04G0282600
rosa_samantha Rh4BG346400 Rh4CG360900 Rh4DG340800
rosa_wichuraiana Rw4G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 44, 85
AciI CCGC 9 cut(s) 42, 44, 83, 108, 131, 185, 203, 206, 209
AcoI YGGCCR 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 16
AjiI CACGTC 1 cut(s) 17
AleI CACNNNNGTG 1 cut(s) 289
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 2 cut(s) 50, 58
AluI AGCT 2 cut(s) 50, 58
Alw26I GTCTC 1 cut(s) 7
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 65, 110
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 375
AsuHPI GGTGA 3 cut(s) 130, 276, 323
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 375
BauI CACGAG 1 cut(s) 226
BbvI GCAGC 2 cut(s) 52, 97
BccI CCATC 4 cut(s) 143, 155, 193, 230
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 7
BisI GCNGC 8 cut(s) 66, 83, 108, 111, 132, 186, 204, 207
BlsI GCNGC 8 cut(s) 67, 84, 109, 112, 133, 187, 205, 208
Bme18I GGWCC 1 cut(s) 375
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 375
BplI GAGNNNNNCTC 2 cut(s) 209, 241
Bpu10I CCTNAGC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 401
BsaJI CCNNGG 2 cut(s) 42, 114
BseDI CCNNGG 2 cut(s) 42, 114
BseGI GGATG 3 cut(s) 259, 301, 358
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 227, 230
BseXI GCAGC 2 cut(s) 52, 97
Bsh1236I CGCG 2 cut(s) 44, 85
BshFI GGCC 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 7
BsmBI CGTCTC 1 cut(s) 7
BsnI GGCC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 401
Bsp143I GATC 4 cut(s) 22, 99, 172, 337
BspACI CCGC 9 cut(s) 42, 44, 83, 108, 131, 185, 203, 206, 209
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 2 cut(s) 44, 85
BspT104I TTCGAA 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 42, 114
BssMI GATC 4 cut(s) 22, 99, 172, 337
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 120
BstBI TTCGAA 1 cut(s) 401
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 282
BstF5I GGATG 3 cut(s) 259, 301, 358
BstFNI CGCG 2 cut(s) 44, 85
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 4 cut(s) 25, 102, 175, 340
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 4 cut(s) 22, 99, 172, 337
BstMWI GCNNNNNNNGC 3 cut(s) 91, 194, 203
BstPI GGTNACC 1 cut(s) 282
BstUI CGCG 2 cut(s) 44, 85
BstV1I GCAGC 2 cut(s) 52, 97
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 212
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 3 cut(s) 259, 301, 358
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 375
Cfr42I CCGCGG 1 cut(s) 45
CseI GACGC 1 cut(s) 71
CviAII CATG 4 cut(s) 26, 267, 307, 341
CviJI RGCY 6 cut(s) 50, 58, 94, 107, 134, 188
CviKI_1 RGCY 6 cut(s) 50, 58, 94, 107, 134, 188
DdeI CTNAG 1 cut(s) 189
DpnI GATC 4 cut(s) 24, 101, 174, 339
DpnII GATC 4 cut(s) 22, 99, 172, 337
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 282
EcoO65I GGTNACC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 4 cut(s) 29, 270, 310, 344
FaiI YATR 5 cut(s) 27, 268, 308, 324, 342
FatI CATG 4 cut(s) 25, 266, 306, 340
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 8 cut(s) 66, 83, 108, 111, 132, 186, 204, 207
FokI GGATG 3 cut(s) 266, 308, 365
Fsp4HI GCNGC 8 cut(s) 66, 83, 108, 111, 132, 186, 204, 207
GlaI GCGC 1 cut(s) 86
GluI GCNGC 8 cut(s) 66, 83, 108, 111, 132, 186, 204, 207
HaeIII GGCC 1 cut(s) 134
HgaI GACGC 1 cut(s) 71
HhaI GCGC 1 cut(s) 87
Hin1II CATG 4 cut(s) 29, 270, 310, 344
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 154, 391
HphI GGTGA 3 cut(s) 130, 276, 323
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 194, 203
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 4 cut(s) 29, 270, 310, 344
HspAI GCGC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 337
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 4 cut(s) 22, 99, 172, 337
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 176, 394
Lsp1109I GCAGC 2 cut(s) 52, 97
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 282
MalI GATC 4 cut(s) 24, 101, 174, 339
MboI GATC 4 cut(s) 22, 99, 172, 337
MboII GAAGA 2 cut(s) 16, 137
MluCI AATT 2 cut(s) 220, 396
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 3 cut(s) 121, 205, 208
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 3 cut(s) 30, 140, 289
MspA1I CMGCKG 2 cut(s) 44, 110
MvnI CGCG 2 cut(s) 44, 85
MwoI GCNNNNNNNGC 3 cut(s) 91, 194, 203
NdeII GATC 4 cut(s) 22, 99, 172, 337
NlaIII CATG 4 cut(s) 29, 270, 310, 344
NmuCI GTSAC 1 cut(s) 282
NspV TTCGAA 1 cut(s) 401
OliI CACNNNNGTG 1 cut(s) 289
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 8 cut(s) 67, 84, 109, 112, 133, 187, 205, 208
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 375
RseI CAYNNNNRTG 3 cut(s) 30, 140, 289
SacII CCGCGG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 8 cut(s) 66, 83, 108, 111, 132, 186, 204, 207
Sau3AI GATC 4 cut(s) 22, 99, 172, 337
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 1 cut(s) 163
SetI ASST 5 cut(s) 19, 52, 60, 120, 195
Sfr303I CCGCGG 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 401
SgrBI CCGCGG 1 cut(s) 45
SinI GGWCC 1 cut(s) 375
SmiMI CAYNNNNRTG 3 cut(s) 30, 140, 289
Sse9I AATT 2 cut(s) 220, 396
SsiI CCGC 9 cut(s) 42, 44, 83, 108, 131, 185, 203, 206, 209
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 401
TasI AATT 2 cut(s) 220, 396
TauI GCSGC 6 cut(s) 85, 110, 134, 188, 206, 209
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TseFI GTSAC 1 cut(s) 282
TseI GCWGC 2 cut(s) 65, 110
Tsp45I GTSAC 1 cut(s) 282
TspDTI ATGAA 2 cut(s) 17, 295
VpaK11BI GGWCC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.