Prupe.1G345700_v2.0.a1

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018707
Physical Location & Seq
Reverse (-)
32330008 .. 32331825
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G345700.1

Sequence Viewer

Length: 1086 bp
ATGAGCAACAACAATGCAACCTCAGTGCCGGAAGCATATCCAATGAACGGTGGAGATGGCACATACAGCTACACCAAAAACTCTTCTTACCAGAGAGCAGCTGCAAATGTTGCAAAGACTCTAATTGATGAGGCAATAGCAGAGAAACTTGACATAGAAGATTTTTCTTCTGCTTCAAGCAATGCATTTCGCATAGCGGATTTGGGATGCTCAGTTGGACCAAACACTTTCGCATGCGTCCAAAACATAATGGAAGCGGTGAAACAAAAGTACGGATCCCAAATGCCTGACTTCCATGTGTTCTTTAATGACCACGCAGCCAATGATTTCAATACCCTGTTTGCCTCTTTGCCTCCGGAAAGGCACTACTCTGCAGCTGGTGTGCCGGGGTCTTTCCATGGCCGGCTCTTCCCCGAGGCCTCTCTCCATTTCGCGCACTCTTCATATGCAACTCACTGGCTCTCTAAGCTACCAGAAGAAGTCACAAACAAGAACTCTCCGGCATGGAACAAAGGCAAGATTTACTATACAACTTCCCCTGACCAAGTATTTAATGCTTTCGCAGCCCAATTTCGTACGGACATGGCAATATTCTTGGAAGCTCGGGCTAAAGAGCTTGCGGCTGGTGGAATGATGGTGCTAATTATGCAAACCATCCCAGATGGGATCCATCATTCTCGCATTCCAACTGGCATCATGTTTGATTTTCTGGGGTCTATTCTCATGGAGATTGCAAAGGAAGGTTTGATAAGTGAAGAAGAGGTGGACTCATTCAACATTCCAGTGTACACTACGACTCCAAATGAGATGGCAGAGCTGGTAGAAAGAAATGGAAGCTTTAGCATAGTGAAAATGGAGTCAACAAGCCCCTGGTTAAAAGTTGGTCACATAGTAAACAACACGCCGCAGAAACTGGCGAGGGAGCTAAGAGCTGGCATGGAGGGAGTTTTCAAAACTCATTTTGGAAGTGACATTGTTAATCAAGTGTTTGATAGGCTCAATGATAAAAGTGGCCAACTTATCAACCAACTAGAGTCCAGCCACAGACAAGGAACTCAGTTGTTTCTTGCTCTGAAACGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

362

Amino Acids

39.94

Weight (kDa)

5.85

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018707)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36770
malus_domestica MD13G1007200.v1.1
prunus_persica Prupe.1G345700_v2.0.a1
pyrus_communis pycom13g00610
rosa_chinensis RchiOBHm_Chr4g0446481
rosa_multiflora Rmu_sc0005526.1_g000007
rosa_rugosa Rorug04G0371800
rosa_samantha Rh4CG459900
rosa_wichuraiana Rw4G037030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 434
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 4 cut(s) 197, 257, 620, 905
AclWI GGATC 4 cut(s) 270, 283, 661, 674
AcoI YGGCCR 2 cut(s) 400, 1012
AfaI GTAC 3 cut(s) 272, 577, 788
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 4 cut(s) 177, 331, 775, 952
AjnI CCWGG 1 cut(s) 869
AlwI GGATC 4 cut(s) 270, 283, 661, 674
AlwNI CAGNNNCTG 1 cut(s) 913
Ama87I CYCGRG 2 cut(s) 413, 603
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 3 cut(s) 400, 417, 1012
ApeKI GCWGC 5 cut(s) 98, 101, 317, 374, 563
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 271
AvaI CYCGRG 2 cut(s) 413, 603
AvaII GGWCC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 1014
BamHI GGATCC 2 cut(s) 275, 666
BbvI GCAGC 5 cut(s) 88, 110, 329, 386, 575
BccI CCATC 6 cut(s) 50, 628, 656, 662, 678, 802
BciT130I CCWGG 1 cut(s) 871
BcnI CCSGG 1 cut(s) 387
BfaI CTAG 1 cut(s) 1031
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 7 cut(s) 99, 102, 318, 375, 564, 621, 905
BlsI GCNGC 7 cut(s) 100, 103, 319, 376, 565, 622, 906
Bme1390I CCNGG 2 cut(s) 387, 871
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 2 cut(s) 413, 603
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 277, 668
BmrFI CCNGG 2 cut(s) 387, 871
BmsI GCATC 2 cut(s) 197, 702
BplI GAGNNNNNCTC 2 cut(s) 752, 784
BpuMI CCSGG 1 cut(s) 387
BsaJI CCNNGG 4 cut(s) 386, 397, 414, 869
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 781, 811
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 4 cut(s) 461, 694, 782, 918
Bse3DI GCAATG 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 1 cut(s) 871
BseDI CCNNGG 4 cut(s) 386, 397, 414, 869
BseGI GGATG 2 cut(s) 212, 654
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 3 cut(s) 36, 225, 1070
BseNI ACTGG 4 cut(s) 461, 694, 782, 918
BseXI GCAGC 5 cut(s) 88, 110, 329, 386, 575
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 3 cut(s) 402, 419, 1014
BsiHKCI CYCGRG 2 cut(s) 413, 603
BsiSI CCGG 5 cut(s) 29, 356, 386, 403, 500
BsiWI CGTACG 1 cut(s) 575
BslI CCNNNNNNNGG 1 cut(s) 47
BsmI GAATGC 1 cut(s) 681
BsnI GGCC 3 cut(s) 402, 419, 1014
BsoBI CYCGRG 2 cut(s) 413, 603
Bsp13I TCCGGA 1 cut(s) 355
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 2 cut(s) 275, 666
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 4 cut(s) 197, 257, 620, 905
BspANI GGCC 3 cut(s) 402, 419, 1014
BspCNI CTCAG 3 cut(s) 35, 224, 1069
BspEI TCCGGA 1 cut(s) 355
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 2 cut(s) 277, 668
BspMAI CTGCAG 1 cut(s) 376
BspPI GGATC 4 cut(s) 270, 283, 661, 674
BspQI GCTCTTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 402
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 4 cut(s) 461, 694, 782, 918
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 4 cut(s) 386, 397, 414, 869
BssMI GATC 2 cut(s) 275, 666
BssT1I CCWWGG 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 871
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 4 cut(s) 88, 413, 445, 753
BstAPI GCANNNNNTGC 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 786
BstC8I GCNNGC 4 cut(s) 235, 404, 618, 934
BstDEI CTNAG 5 cut(s) 22, 211, 465, 926, 1056
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 2 cut(s) 212, 654
BstFNI CGCG 1 cut(s) 434
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 2 cut(s) 278, 669
BstMBI GATC 2 cut(s) 275, 666
BstMWI GCNNNNNNNGC 5 cut(s) 66, 110, 466, 563, 646
BstNI CCWGG 1 cut(s) 871
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 385, 869
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 5 cut(s) 88, 110, 329, 386, 575
BstX2I RGATCY 2 cut(s) 275, 666
BstYI RGATCY 2 cut(s) 275, 666
BsuRI GGCC 3 cut(s) 402, 419, 1014
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 2 cut(s) 212, 654
BtsIMutI CAGTG 3 cut(s) 30, 454, 789
Cac8I GCNNGC 4 cut(s) 235, 404, 618, 934
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 271, 576, 787
CviAII CATG 8 cut(s) 234, 296, 398, 504, 583, 697, 724, 937
CviQI GTAC 3 cut(s) 271, 576, 787
DdeI CTNAG 5 cut(s) 22, 211, 465, 926, 1056
DpnI GATC 2 cut(s) 277, 668
DpnII GATC 2 cut(s) 275, 666
EaeI YGGCCR 2 cut(s) 400, 1012
Eam1104I CTCTTC 4 cut(s) 88, 413, 445, 753
EarI CTCTTC 4 cut(s) 88, 413, 445, 753
Eco130I CCWWGG 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 218
Eco88I CYCGRG 2 cut(s) 413, 603
EcoRII CCWGG 1 cut(s) 869
EcoT14I CCWWGG 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 8 cut(s) 237, 299, 401, 507, 586, 700, 727, 940
FatI CATG 8 cut(s) 233, 295, 397, 503, 582, 696, 723, 936
FauNDI CATATG 1 cut(s) 445
Fnu4HI GCNGC 7 cut(s) 99, 102, 318, 375, 564, 621, 905
FokI GGATG 2 cut(s) 219, 641
Fsp4HI GCNGC 7 cut(s) 99, 102, 318, 375, 564, 621, 905
FspBI CTAG 1 cut(s) 1031
GlaI GCGC 1 cut(s) 435
GluI GCNGC 7 cut(s) 99, 102, 318, 375, 564, 621, 905
HaeIII GGCC 3 cut(s) 402, 419, 1014
HapII CCGG 5 cut(s) 29, 356, 386, 403, 500
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 436
Hin1II CATG 8 cut(s) 237, 299, 401, 507, 586, 700, 727, 940
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 1 cut(s) 861
HindII GTYRAC 1 cut(s) 861
HindIII AAGCTT 1 cut(s) 835
HinfI GANTC 5 cut(s) 118, 767, 796, 857, 1034
HpaII CCGG 5 cut(s) 29, 356, 386, 403, 500
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 5 cut(s) 766, 787, 789, 861, 895
Hpy188I TCNGA 1 cut(s) 1074
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 5 cut(s) 766, 787, 789, 861, 895
HpyAV CCTTC 1 cut(s) 734
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 8 cut(s) 17, 104, 113, 185, 374, 449, 649, 734
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 110, 466, 563, 646
HpyF3I CTNAG 5 cut(s) 22, 211, 465, 926, 1056
Hsp92II CATG 8 cut(s) 237, 299, 401, 507, 586, 700, 727, 940
HspAI GCGC 1 cut(s) 434
Kpn2I TCCGGA 1 cut(s) 355
KroI GCCGGC 1 cut(s) 402
KroNI GCCGGC 1 cut(s) 404
Kzo9I GATC 2 cut(s) 275, 666
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 5 cut(s) 88, 110, 329, 386, 575
LweI GCATC 2 cut(s) 197, 702
MaeI CTAG 1 cut(s) 1031
MaeIII GTNAC 3 cut(s) 481, 884, 968
MalI GATC 2 cut(s) 277, 668
MboI GATC 2 cut(s) 275, 666
MboII GAAGA 8 cut(s) 75, 159, 170, 400, 432, 488, 767, 770
MflI RGATCY 2 cut(s) 275, 666
MlsI TGGCCA 1 cut(s) 1014
MluCI AATT 3 cut(s) 123, 569, 642
MluNI TGGCCA 1 cut(s) 1014
MlyI GAGTC 5 cut(s) 112, 761, 790, 866, 1043
MmeI TCCRAC 2 cut(s) 196, 710
MnlI CCTC 9 cut(s) 31, 124, 355, 363, 409, 430, 754, 912, 934
Mox20I TGGCCA 1 cut(s) 1014
Mph1103I ATGCAT 1 cut(s) 187
MroI TCCGGA 1 cut(s) 355
MroNI GCCGGC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 1014
MseI TTAA 4 cut(s) 306, 552, 875, 978
MslI CAYNNNNRTG 1 cut(s) 782
Msp20I TGGCCA 1 cut(s) 1014
MspA1I CMGCKG 2 cut(s) 101, 377
MspI CCGG 5 cut(s) 29, 356, 386, 403, 500
MspR9I CCNGG 2 cut(s) 387, 871
Mva1269I GAATGC 1 cut(s) 681
MvaI CCWGG 1 cut(s) 871
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 5 cut(s) 66, 110, 466, 563, 646
NaeI GCCGGC 1 cut(s) 404
NciI CCSGG 1 cut(s) 387
NcoI CCATGG 1 cut(s) 397
NdeI CATATG 1 cut(s) 445
NdeII GATC 2 cut(s) 275, 666
NgoMIV GCCGGC 1 cut(s) 402
NlaIII CATG 8 cut(s) 237, 299, 401, 507, 586, 700, 727, 940
NlaIV GGNNCC 2 cut(s) 277, 668
NmuCI GTSAC 3 cut(s) 481, 884, 968
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 237
PaeI GCATGC 1 cut(s) 237
PceI AGGCCT 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 413
PctI GAATGC 1 cut(s) 681
PdiI GCCGGC 1 cut(s) 404
Pfl23II CGTACG 1 cut(s) 575
PkrI GCNGC 7 cut(s) 100, 103, 319, 376, 565, 622, 906
PleI GAGTC 5 cut(s) 112, 761, 790, 865, 1042
PpsI GAGTC 5 cut(s) 112, 761, 790, 865, 1042
Psp6I CCWGG 1 cut(s) 869
PspGI CCWGG 1 cut(s) 869
PspLI CGTACG 1 cut(s) 575
PspN4I GGNNCC 2 cut(s) 277, 668
PspPI GGNCC 1 cut(s) 218
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 2 cut(s) 275, 666
PvuII CAGCTG 2 cut(s) 101, 377
RsaI GTAC 3 cut(s) 272, 577, 788
RsaNI GTAC 3 cut(s) 271, 576, 787
RseI CAYNNNNRTG 1 cut(s) 782
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 4 cut(s) 306, 552, 875, 978
SatI GCNGC 7 cut(s) 99, 102, 318, 375, 564, 621, 905
Sau3AI GATC 2 cut(s) 275, 666
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 5 cut(s) 112, 761, 790, 866, 1043
ScrFI CCNGG 2 cut(s) 387, 871
SfaNI GCATC 2 cut(s) 197, 702
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 782
SphI GCATGC 1 cut(s) 237
Sse9I AATT 3 cut(s) 123, 569, 642
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 4 cut(s) 197, 257, 620, 905
SspI AATATT 1 cut(s) 591
SspMI CTAG 1 cut(s) 1031
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 385, 869
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 50
TasI AATT 3 cut(s) 123, 569, 642
TatI WGTACW 1 cut(s) 786
TauI GCSGC 2 cut(s) 623, 907
Tru1I TTAA 4 cut(s) 306, 552, 875, 978
Tru9I TTAA 4 cut(s) 306, 552, 875, 978
TscAI CASTG 3 cut(s) 30, 461, 789
TseFI GTSAC 3 cut(s) 481, 884, 968
TseI GCWGC 5 cut(s) 98, 101, 317, 374, 563
Tsp45I GTSAC 3 cut(s) 481, 884, 968
TspDTI ATGAA 2 cut(s) 59, 432
TspGWI ACGGA 2 cut(s) 288, 593
TspRI CASTG 3 cut(s) 30, 461, 789
VpaK11BI GGWCC 1 cut(s) 218
XceI RCATGY 1 cut(s) 237
XspI CTAG 1 cut(s) 1031
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.