Prupe.1G391300_v2.0.a1

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014679
Physical Location & Seq
Forward (+)
34868783 .. 34870585
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G391300.1

Sequence Viewer

Length: 1140 bp
ATGGGTACCCCAAAGTTCATGCCTTTTCTCATCTTTGTAATCTTCCTCACAACTCTACTTCAAAATTCTGAAGCAAACCAGTTTCCTTCTGTTCATCCACCTCACAAAGGGATCAGAGCAGCATATTGGCCATCGTTTAACACATTCCCAGCTTCCTCTATAGACACCTCCTACTTCACCCACATCTACTATGCCTTCCTCTTACCCGAACCCACCACTTACAAACTCAACCTCACCCAATTCGACCAAAAAACAATACCCCAATTCATCGGAGCTCTCCGTACAAGAAACCCGCCCGTCAAAACCCTCCTCTCCATCGGCGGCGGAGGTAACAATGCAACAGTATTTTCACTCATGGCTAGCACCCAGCTGACCCGGAAAGCCTTCATCAGTTCCTCCATTGAAGTGGCTCGAAAATTCGGGTTCCAAGGTCTCGACTTGGACTGGGAATTCCCGGCTGATGCTGTGGACATGTCAAATCTTGCCTTGCTGTACAAGGAATGGAGAAAAGCTCTGGACAATGAAGCTAGAATTAGCGGTAAACCGCGTTTACTTTTAACCTCCGCGGTATATTATGCGTCGAAATTTACCTTTTACGGCGGCCCGAGAGCATATCCAGCCTGGGCAATAAGTAAATATCTGGATTGGGCGAGCCCGATGTGCTTTGATTATCACGGGTCATGGGAAAATTTCACTGGGCTGCATGCTGCGTTGTATGATTCCAAGAGTAATATTAGTACCAGTTATGGGCTCGGGTCATGGATCAAAGCCGGAGTACCGCCGAATAAGCTCGTCATGGGGTTGCCACTATACGGGAGGACTTGGACGCTCCAGAACCCGATCGTGAATCGGGTTGGAGTGCCTGCTTTGGGTGTTGGGCCTGGGGATGGCGTTTTGGTTTTTCACCAAATAGTGAATTTTAACAAGAGAACTAATGCAACTGTTGTATATGATAGCAAAGCGGTGGCGTATTATTCTTATTCGGGTAGCTCTTGGATCGGGTATGATGACGTCCGATCCGTGAACTTAAAGGTCCGGTTTGCGAAGTCGCTAGGCTTGGGTGGATACTTCTTTTGGGCTCTGGGTCAAGACAAAGACTGGACTATATCAAGCCAAGCTTCAAATGCTTGGAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

380

Amino Acids

42.33

Weight (kDa)

9.49

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40880 FvH4_2g40880
malus_domestica MD08G1059100.v1.1 MD14G1173400.v1.1 MD15G1037300.v1.1
prunus_persica Prupe.1G391300_v2.0.a1
pyrus_communis pycom15g03440
rosa_chinensis RchiOBHm_Chr6g0299691
rosa_laevigata RLG00000011396
rosa_multiflora Rmu_sc0002895.1_g000010
rosa_roxburghii Rroxscaffold_7G00168440
rosa_rugosa Rorug06G0291600
rosa_samantha Rh6AG402400 Rh6BG410900 Rh6CG416700 Rh6DG403800
rosa_wichuraiana Rw6G035230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1014
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 2 cut(s) 547, 566
AclWI GGATC 4 cut(s) 119, 770, 1004, 1011
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 6 cut(s) 64, 416, 449, 584, 688, 916
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 1011
AfaI GTAC 5 cut(s) 7, 283, 494, 739, 777
AfiI CCNNNNNNNGG 5 cut(s) 107, 747, 812, 869, 887
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 3 cut(s) 62, 404, 1122
AjnI CCWGG 2 cut(s) 620, 880
AluBI AGCT 8 cut(s) 152, 275, 370, 512, 527, 790, 990, 1118
AluI AGCT 8 cut(s) 152, 275, 370, 512, 527, 790, 990, 1118
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 4 cut(s) 119, 770, 1004, 1011
Ama87I CYCGRG 2 cut(s) 604, 752
AoxI GGCC 3 cut(s) 128, 601, 878
ApeKI GCWGC 3 cut(s) 119, 700, 707
ApoI RAATTY 6 cut(s) 64, 416, 449, 584, 688, 916
Asp700I GAANNNNTTC 1 cut(s) 383
Asp718I GGTACC 1 cut(s) 5
AspS9I GGNCC 3 cut(s) 602, 878, 1033
AsuC2I CCSGG 2 cut(s) 376, 455
AsuHPI GGTGA 3 cut(s) 169, 226, 896
AsuNHI GCTAGC 1 cut(s) 359
AvaI CYCGRG 2 cut(s) 604, 752
AvaII GGWCC 1 cut(s) 1033
BalI TGGCCA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 4 cut(s) 277, 656, 753, 1081
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 3 cut(s) 131, 687, 694
BccI CCATC 3 cut(s) 139, 323, 881
BceAI ACGGC 1 cut(s) 613
BciT130I CCWGG 2 cut(s) 622, 882
BciVI GTATCC 1 cut(s) 1058
BcnI CCSGG 2 cut(s) 376, 455
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 3 cut(s) 360, 528, 1052
BfmI CTRYAG 1 cut(s) 159
BfuI GTATCC 1 cut(s) 1058
BisI GCNGC 5 cut(s) 120, 322, 601, 701, 708
BlsI GCNGC 5 cut(s) 121, 323, 602, 702, 709
Bme1390I CCNGG 4 cut(s) 376, 455, 622, 882
Bme18I GGWCC 1 cut(s) 1033
BmeT110I CYCGRG 2 cut(s) 604, 752
BmgT120I GGNCC 3 cut(s) 602, 878, 1033
BmiI GGNNCC 2 cut(s) 7, 425
BmrFI CCNGG 4 cut(s) 376, 455, 622, 882
BmrI ACTGGG 2 cut(s) 454, 705
BmsI GCATC 1 cut(s) 451
BmtI GCTAGC 1 cut(s) 363
BmuI ACTGGG 2 cut(s) 454, 705
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpmI CTGGAG 1 cut(s) 815
BpuMI CCSGG 2 cut(s) 376, 455
BsaHI GRCGYC 1 cut(s) 1011
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 4 cut(s) 427, 564, 621, 881
BsaWI WCCGGW 1 cut(s) 1035
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 747, 812, 869, 887
Bse1I ACTGG 5 cut(s) 79, 449, 700, 741, 1103
BseBI CCWGG 2 cut(s) 622, 882
BseDI CCNNGG 4 cut(s) 427, 564, 621, 881
BseGI GGATG 2 cut(s) 94, 892
BseLI CCNNNNNNNGG 5 cut(s) 107, 747, 812, 869, 887
BseNI ACTGG 5 cut(s) 79, 449, 700, 741, 1103
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 131, 687, 694
BseYI CCCAGC 2 cut(s) 148, 366
Bsh1236I CGCG 2 cut(s) 547, 566
Bsh1285I CGRYCG 1 cut(s) 843
BshFI GGCC 3 cut(s) 130, 603, 880
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 843
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 2 cut(s) 604, 752
BsiSI CCGG 4 cut(s) 376, 455, 771, 1036
BslI CCNNNNNNNGG 5 cut(s) 107, 747, 812, 869, 887
BsmAI GTCTC 1 cut(s) 437
BsnI GGCC 3 cut(s) 130, 603, 880
Bso31I GGTCTC 1 cut(s) 437
BsoBI CYCGRG 2 cut(s) 604, 752
Bsp1286I GDGCHC 4 cut(s) 277, 656, 753, 1081
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 5 cut(s) 111, 762, 840, 996, 1016
BspANI GGCC 3 cut(s) 130, 603, 880
BspFNI CGCG 2 cut(s) 547, 566
BspLI GGNNCC 2 cut(s) 7, 425
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 4 cut(s) 119, 770, 1004, 1011
BspT107I GGYRCC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 437
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 5 cut(s) 79, 449, 700, 741, 1103
BssECI CCNNGG 4 cut(s) 427, 564, 621, 881
BssMI GATC 5 cut(s) 111, 762, 840, 996, 1016
BssNI GRCGYC 1 cut(s) 1011
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 2 cut(s) 622, 882
Bst4CI ACNGT 2 cut(s) 343, 943
BstACI GRCGYC 1 cut(s) 1011
BstAUI TGTACA 1 cut(s) 492
BstC8I GCNNGC 4 cut(s) 361, 652, 705, 864
BstDSI CCRYGG 1 cut(s) 564
BstENI CCTNNNNNAGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 94, 892
BstFNI CGCG 2 cut(s) 547, 566
BstKTI GATC 5 cut(s) 114, 765, 843, 999, 1019
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 5 cut(s) 111, 762, 840, 996, 1016
BstMCI CGRYCG 1 cut(s) 843
BstMWI GCNNNNNNNGC 4 cut(s) 617, 660, 787, 1124
BstNI CCWGG 2 cut(s) 622, 882
BstNSI RCATGY 2 cut(s) 475, 707
BstSCI CCNGG 4 cut(s) 374, 453, 620, 880
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 2 cut(s) 547, 566
BstV1I GCAGC 3 cut(s) 131, 687, 694
BstXI CCANNNNNNTGG 1 cut(s) 406
BsuI GTATCC 1 cut(s) 1058
BsuRI GGCC 3 cut(s) 130, 603, 880
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 2 cut(s) 94, 892
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 4 cut(s) 361, 652, 705, 864
Cfr13I GGNCC 3 cut(s) 602, 878, 1033
Cfr42I CCGCGG 1 cut(s) 567
CseI GACGC 2 cut(s) 567, 835
Csp6I GTAC 5 cut(s) 6, 282, 493, 738, 776
CviAII CATG 7 cut(s) 19, 355, 472, 681, 704, 759, 796
CviQI GTAC 5 cut(s) 6, 282, 493, 738, 776
DpnI GATC 5 cut(s) 113, 764, 842, 998, 1018
DpnII GATC 5 cut(s) 111, 762, 840, 996, 1016
EaeI YGGCCR 1 cut(s) 128
EciI GGCGGA 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 427
Eco24I GRGCYC 4 cut(s) 277, 656, 753, 1081
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 1033
Eco53kI GAGCTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 2 cut(s) 604, 752
EcoICRI GAGCTC 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 449
EcoRII CCWGG 2 cut(s) 620, 880
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 4 cut(s) 277, 656, 753, 1081
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 7 cut(s) 22, 358, 475, 684, 707, 762, 799
FalI AAGNNNNNCTT 2 cut(s) 1102, 1134
FatI CATG 7 cut(s) 18, 354, 471, 680, 703, 758, 795
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 5 cut(s) 120, 322, 601, 701, 708
FokI GGATG 2 cut(s) 81, 899
FriOI GRGCYC 4 cut(s) 277, 656, 753, 1081
Fsp4HI GCNGC 5 cut(s) 120, 322, 601, 701, 708
FspBI CTAG 3 cut(s) 360, 528, 1052
GluI GCNGC 5 cut(s) 120, 322, 601, 701, 708
GsaI CCCAGC 2 cut(s) 152, 370
GsuI CTGGAG 1 cut(s) 815
HaeIII GGCC 3 cut(s) 130, 603, 880
HapII CCGG 4 cut(s) 376, 455, 771, 1036
HgaI GACGC 2 cut(s) 567, 835
Hin1I GRCGYC 1 cut(s) 1011
Hin1II CATG 7 cut(s) 22, 358, 475, 684, 707, 762, 799
HindIII AAGCTT 1 cut(s) 1116
HinfI GANTC 2 cut(s) 719, 847
HpaII CCGG 4 cut(s) 376, 455, 771, 1036
HphI GGTGA 3 cut(s) 169, 226, 896
Hpy166II GTNNAC 4 cut(s) 469, 542, 551, 1024
Hpy188I TCNGA 4 cut(s) 70, 116, 272, 1016
Hpy188III TCNNGA 6 cut(s) 434, 515, 641, 832, 844, 1088
Hpy8I GTNNAC 4 cut(s) 469, 542, 551, 1024
Hpy99I CGWCG 1 cut(s) 583
HpyAV CCTTC 3 cut(s) 96, 205, 394
HpyCH4III ACNGT 2 cut(s) 343, 943
HpyCH4IV ACGT 1 cut(s) 1011
HpyCH4V TGCA 3 cut(s) 338, 703, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 617, 660, 787, 1124
HpySE526I ACGT 1 cut(s) 1011
Hsp92I GRCGYC 1 cut(s) 1011
Hsp92II CATG 7 cut(s) 22, 358, 475, 684, 707, 762, 799
KpnI GGTACC 1 cut(s) 9
KspI CCGCGG 1 cut(s) 567
Kzo9I GATC 5 cut(s) 111, 762, 840, 996, 1016
LmnI GCTCC 2 cut(s) 272, 834
Lsp1109I GCAGC 3 cut(s) 131, 687, 694
LweI GCATC 1 cut(s) 451
MaeI CTAG 3 cut(s) 360, 528, 1052
MaeII ACGT 1 cut(s) 1011
MaeIII GTNAC 1 cut(s) 329
MalI GATC 5 cut(s) 113, 764, 842, 998, 1018
MboI GATC 5 cut(s) 111, 762, 840, 996, 1016
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 4 cut(s) 277, 656, 753, 1081
MlsI TGGCCA 1 cut(s) 130
MluCI AATT 9 cut(s) 64, 239, 263, 416, 449, 531, 584, 688, 916
MluNI TGGCCA 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 835
Mox20I TGGCCA 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 383
MscI TGGCCA 1 cut(s) 130
MseI TTAA 4 cut(s) 138, 557, 921, 1028
MslI CAYNNNNRTG 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 130
MspA1I CMGCKG 2 cut(s) 370, 566
MspI CCGG 4 cut(s) 376, 455, 771, 1036
MspR9I CCNGG 4 cut(s) 376, 455, 622, 882
MvaI CCWGG 2 cut(s) 622, 882
MvnI CGCG 2 cut(s) 547, 566
MwoI GCNNNNNNNGC 4 cut(s) 617, 660, 787, 1124
NciI CCSGG 2 cut(s) 376, 455
NdeII GATC 5 cut(s) 111, 762, 840, 996, 1016
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 7 cut(s) 22, 358, 475, 684, 707, 762, 799
NlaIV GGNNCC 2 cut(s) 7, 425
NspI RCATGY 2 cut(s) 475, 707
PaeI GCATGC 1 cut(s) 707
PciI ACATGT 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 1017
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 2 cut(s) 719, 847
PkrI GCNGC 5 cut(s) 121, 323, 602, 702, 709
Ple19I CGATCG 1 cut(s) 843
PscI ACATGT 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 620, 880
PspFI CCCAGC 2 cut(s) 148, 366
PspGI CCWGG 2 cut(s) 620, 880
PspN4I GGNNCC 2 cut(s) 7, 425
PspPI GGNCC 3 cut(s) 602, 878, 1033
PvuI CGATCG 1 cut(s) 843
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 5 cut(s) 7, 283, 494, 739, 777
RsaNI GTAC 5 cut(s) 6, 282, 493, 738, 776
RseI CAYNNNNRTG 1 cut(s) 404
SacI GAGCTC 1 cut(s) 277
SacII CCGCGG 1 cut(s) 567
SaqAI TTAA 4 cut(s) 138, 557, 921, 1028
SatI GCNGC 5 cut(s) 120, 322, 601, 701, 708
Sau3AI GATC 5 cut(s) 111, 762, 840, 996, 1016
Sau96I GGNCC 3 cut(s) 602, 878, 1033
ScrFI CCNGG 4 cut(s) 376, 455, 622, 882
SduI GDGCHC 4 cut(s) 277, 656, 753, 1081
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 159
Sfr303I CCGCGG 1 cut(s) 567
SgrBI CCGCGG 1 cut(s) 567
SinI GGWCC 1 cut(s) 1033
SmiMI CAYNNNNRTG 1 cut(s) 404
SphI GCATGC 1 cut(s) 707
Sse9I AATT 9 cut(s) 64, 239, 263, 416, 449, 531, 584, 688, 916
SspI AATATT 1 cut(s) 733
SspMI CTAG 3 cut(s) 360, 528, 1052
SstI GAGCTC 1 cut(s) 277
StyD4I CCNGG 4 cut(s) 374, 453, 620, 880
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 2 cut(s) 343, 943
TaiI ACGT 1 cut(s) 1014
TaqI TCGA 4 cut(s) 243, 412, 435, 581
TasI AATT 9 cut(s) 64, 239, 263, 416, 449, 531, 584, 688, 916
TatI WGTACW 1 cut(s) 492
TauI GCSGC 2 cut(s) 324, 603
TfiI GAWTC 2 cut(s) 719, 847
Tru1I TTAA 4 cut(s) 138, 557, 921, 1028
Tru9I TTAA 4 cut(s) 138, 557, 921, 1028
TscAI CASTG 1 cut(s) 700
TseI GCWGC 3 cut(s) 119, 700, 707
TspDTI ATGAA 5 cut(s) 7, 83, 256, 376, 537
TspGWI ACGGA 2 cut(s) 269, 1009
TspRI CASTG 1 cut(s) 700
VpaK11BI GGWCC 1 cut(s) 1033
XagI CCTNNNNNAGG 1 cut(s) 105
XapI RAATTY 6 cut(s) 64, 416, 449, 584, 688, 916
XceI RCATGY 2 cut(s) 475, 707
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 3 cut(s) 360, 528, 1052
ZraI GACGTC 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.