Rorug06G0291600

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014679
Physical Location & Seq
Reverse (-)
44251491 .. 44325672
74182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0291600.1

Sequence Viewer

Length: 564 bp
ATGGCTGCAACAACTGCTATGCAATCAGTCCTTGGAAGCTCCATTGCCTACGGAGCTGCAGGCAACAACAGATCACTGAACCTGCGGAGTACCGTTCCAGCTAGTTATGCAGTTTCGAGCTATCTCAGGGTTCGCTCAATGGCCGAGGATGGTCAAAAGAAGCAACCAACAACTGTAACAAAAGCCTCAAAGGATCCCCAGCCTGCAGCTTCTCCACCATCTCCCAAGTTTTCAGACGTGTTTGCATTCAGTGGACCAGCACCGGAGAGAATCAACGGCAGGCTGGCAATGGTAGGCTTTGTTGCTGCTCTGGCTGTCGAACTATCAAAGGGGCAAGATGTGTTCGCTCAGATATCCAACGGCCCCGGAGTACCTTTGTTCATCGGCACAAGTATTTTGCTATCAGTGGCATACTTGGTTCCCCTATTGAAAGGAGTGACCGTGGAGTCCAAATCAGACGGGATCATGACCTCAGATGCAGAGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCATGTAGTTTTGGCCTTCACCGAGTACGTGACTGGCAGTACCCTAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

187

Amino Acids

19.45

Weight (kDa)

9.26

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 87 - 179 9.5e-09 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40880 FvH4_2g40880
malus_domestica MD08G1059100.v1.1 MD14G1173400.v1.1 MD15G1037300.v1.1
prunus_persica Prupe.1G391300_v2.0.a1
pyrus_communis pycom15g03440
rosa_chinensis RchiOBHm_Chr6g0299691
rosa_laevigata RLG00000011396
rosa_multiflora Rmu_sc0002895.1_g000010
rosa_roxburghii Rroxscaffold_7G00168440
rosa_rugosa Rorug06G0291600
rosa_samantha Rh6AG402400 Rh6BG410900 Rh6CG416700 Rh6DG403800
rosa_wichuraiana Rw6G035230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 445
Acc36I ACCTGC 1 cut(s) 90
AciI CCGC 1 cut(s) 85
AclWI GGATC 3 cut(s) 188, 201, 470
AcoI YGGCCR 2 cut(s) 141, 501
AfaI GTAC 4 cut(s) 91, 372, 539, 553
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 430
AjiI CACGTC 1 cut(s) 238
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AluBI AGCT 6 cut(s) 39, 56, 101, 120, 209, 484
AluI AGCT 6 cut(s) 39, 56, 101, 120, 209, 484
Alw21I GWGCWC 1 cut(s) 486
AlwI GGATC 3 cut(s) 188, 201, 470
AoxI GGCC 4 cut(s) 141, 361, 501, 525
ApeKI GCWGC 4 cut(s) 5, 56, 206, 305
AspS9I GGNCC 2 cut(s) 254, 362
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 523
AvaII GGWCC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 503
BamHI GGATCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 3 cut(s) 43, 218, 292
BccI CCATC 2 cut(s) 143, 226
BceAI ACGGC 2 cut(s) 292, 376
BcnI CCSGG 1 cut(s) 366
BfaI CTAG 2 cut(s) 102, 557
BfmI CTRYAG 2 cut(s) 57, 204
BfuAI ACCTGC 1 cut(s) 90
BisI GCNGC 4 cut(s) 6, 57, 207, 306
BlsI GCNGC 4 cut(s) 7, 58, 208, 307
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 254, 362
BmiI GGNNCC 3 cut(s) 195, 364, 420
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 466
BpuMI CCSGG 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 541
BsaJI CCNNGG 4 cut(s) 31, 144, 364, 441
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 2 cut(s) 42, 294
BseDI CCNNGG 4 cut(s) 31, 144, 364, 441
BseGI GGATG 1 cut(s) 154
BseMI GCAATG 2 cut(s) 42, 294
BseMII CTCAG 3 cut(s) 139, 362, 486
BseNI ACTGG 1 cut(s) 550
BseXI GCAGC 3 cut(s) 43, 218, 292
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 4 cut(s) 143, 363, 503, 527
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 2 cut(s) 263, 366
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 4 cut(s) 143, 363, 503, 527
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 3 cut(s) 71, 193, 462
BspACI CCGC 1 cut(s) 85
BspANI GGCC 4 cut(s) 143, 363, 503, 527
BspCNI CTCAG 3 cut(s) 138, 361, 485
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 3 cut(s) 195, 364, 420
BspMAI CTGCAG 2 cut(s) 61, 208
BspMI ACCTGC 1 cut(s) 90
BspPI GGATC 3 cut(s) 188, 201, 470
BsrDI GCAATG 2 cut(s) 42, 294
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 4 cut(s) 31, 144, 364, 441
BssMI GATC 3 cut(s) 71, 193, 462
BssT1I CCWWGG 1 cut(s) 31
Bst4CI ACNGT 3 cut(s) 94, 175, 442
BstAPI GCANNNNNTGC 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 541
BstC8I GCNNGC 4 cut(s) 61, 204, 281, 285
BstDEI CTNAG 3 cut(s) 125, 348, 472
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 3 cut(s) 74, 196, 465
BstMBI GATC 3 cut(s) 71, 193, 462
BstMWI GCNNNNNNNGC 4 cut(s) 14, 53, 107, 311
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 2 cut(s) 57, 204
BstV1I GCAGC 3 cut(s) 43, 218, 292
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 4 cut(s) 143, 363, 503, 527
BtgI CCRYGG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 3 cut(s) 74, 256, 411
BveI ACCTGC 1 cut(s) 90
Cac8I GCNNGC 4 cut(s) 61, 204, 281, 285
CciI TCATGA 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 254, 362
Csp6I GTAC 4 cut(s) 90, 371, 538, 552
CviAII CATG 3 cut(s) 466, 505, 515
CviQI GTAC 4 cut(s) 90, 371, 538, 552
DdeI CTNAG 3 cut(s) 125, 348, 472
DpnI GATC 3 cut(s) 73, 195, 464
DpnII GATC 3 cut(s) 71, 193, 462
DrdI GACNNNNNNGTC 1 cut(s) 445
DseDI GACNNNNNNGTC 1 cut(s) 445
EaeI YGGCCR 2 cut(s) 141, 501
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 486
Eco32I GATATC 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 484
EcoICRI GAGCTC 1 cut(s) 484
EcoRV GATATC 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 3 cut(s) 469, 508, 518
FaiI YATR 6 cut(s) 20, 108, 412, 467, 506, 516
FatI CATG 3 cut(s) 465, 504, 514
Fnu4HI GCNGC 4 cut(s) 6, 57, 207, 306
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 4 cut(s) 6, 57, 207, 306
FspBI CTAG 2 cut(s) 102, 557
GluI GCNGC 4 cut(s) 6, 57, 207, 306
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 4 cut(s) 143, 363, 503, 527
HapII CCGG 2 cut(s) 263, 366
Hin1II CATG 3 cut(s) 469, 508, 518
HinfI GANTC 2 cut(s) 270, 446
HpaII CCGG 2 cut(s) 263, 366
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 4 cut(s) 235, 351, 457, 475
Hpy188III TCNNGA 2 cut(s) 466, 487
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 489, 538
HpyCH4III ACNGT 3 cut(s) 94, 175, 442
HpyCH4IV ACGT 2 cut(s) 237, 540
HpyCH4V TGCA 7 cut(s) 8, 22, 59, 110, 206, 245, 479
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 53, 107, 311
HpyF3I CTNAG 3 cut(s) 125, 348, 472
HpySE526I ACGT 2 cut(s) 237, 540
Hsp92II CATG 3 cut(s) 469, 508, 518
Kzo9I GATC 3 cut(s) 71, 193, 462
LmnI GCTCC 2 cut(s) 44, 53
Lsp1109I GCAGC 3 cut(s) 43, 218, 292
LweI GCATC 1 cut(s) 466
MaeI CTAG 2 cut(s) 102, 557
MaeII ACGT 2 cut(s) 237, 540
MaeIII GTNAC 3 cut(s) 175, 436, 541
MalI GATC 3 cut(s) 73, 195, 464
MboI GATC 3 cut(s) 71, 193, 462
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 486
MlsI TGGCCA 1 cut(s) 503
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 3 cut(s) 139, 196, 481
Mox20I TGGCCA 1 cut(s) 503
MscI TGGCCA 1 cut(s) 503
Msp20I TGGCCA 1 cut(s) 503
MspI CCGG 2 cut(s) 263, 366
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 14, 53, 107, 311
NciI CCSGG 1 cut(s) 366
NdeII GATC 3 cut(s) 71, 193, 462
NlaIII CATG 3 cut(s) 469, 508, 518
NlaIV GGNNCC 3 cut(s) 195, 364, 420
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 436, 541
PagI TCATGA 1 cut(s) 465
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 4 cut(s) 7, 58, 208, 307
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 541
Psp124BI GAGCTC 1 cut(s) 486
PspFI CCCAGC 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 195, 364, 420
PspPI GGNCC 2 cut(s) 254, 362
PstI CTGCAG 2 cut(s) 61, 208
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 4 cut(s) 91, 372, 539, 553
RsaNI GTAC 4 cut(s) 90, 371, 538, 552
SacI GAGCTC 1 cut(s) 486
SatI GCNGC 4 cut(s) 6, 57, 207, 306
Sau3AI GATC 3 cut(s) 71, 193, 462
Sau96I GGNCC 2 cut(s) 254, 362
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 2 cut(s) 57, 204
SinI GGWCC 1 cut(s) 254
SsiI CCGC 1 cut(s) 85
SspMI CTAG 2 cut(s) 102, 557
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 3 cut(s) 94, 175, 442
TaiI ACGT 2 cut(s) 240, 543
TaqI TCGA 2 cut(s) 116, 318
TfiI GAWTC 1 cut(s) 270
TscAI CASTG 3 cut(s) 81, 256, 411
TseFI GTSAC 2 cut(s) 436, 541
TseI GCWGC 4 cut(s) 5, 56, 206, 305
Tsp45I GTSAC 2 cut(s) 436, 541
TspDTI ATGAA 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 3 cut(s) 81, 256, 411
VpaK11BI GGWCC 1 cut(s) 254
XspI CTAG 2 cut(s) 102, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.