No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25460 AT2G25460 |
| fragaria_vesca | FvH4_2g29030 |
| malus_domestica | MD00G1144300.v1.1 MD08G1150600.v1.1 |
| prunus_persica | Prupe.1G481200_v2.0.a1 |
| pyrus_communis | pycom08g12690 pycom15g11310 pycom15g11320 |
| rosa_chinensis | RchiOBHm_Chr6g0297901 |
| rosa_laevigata | RLG00000011552 |
| rosa_multiflora | Rmu_co8393369.1_g000002 Rmu_sc0011097.1_g000011 |
| rosa_roxburghii | Rroxscaffold_7G00170090 Rroxscaffold_7G00170100 Rroxscaffold_7G00178970 |
| rosa_rugosa | Rorug06G0276800 |
| rosa_samantha | Rh6AG387300 Rh6BG395700 Rh6CG401500 Rh6DG388000 |
| rosa_wichuraiana | Rw6G033740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1326 |
| AccB1I | GGYRCC | 2 cut(s) | 186, 293 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 167, 1224 |
| AclWI | GGATC | 2 cut(s) | 775, 1179 |
| AcoI | YGGCCR | 1 cut(s) | 549 |
| AcsI | RAATTY | 5 cut(s) | 254, 385, 912, 1190, 1571 |
| AcuI | CTGAAG | 2 cut(s) | 1339, 1508 |
| AcvI | CACGTG | 1 cut(s) | 23 |
| AcyI | GRCGYC | 1 cut(s) | 1323 |
| AdeI | CACNNNGTG | 1 cut(s) | 1224 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 49, 167, 210, 764, 1224 |
| AflIII | ACRYGT | 1 cut(s) | 20 |
| AhlI | ACTAGT | 1 cut(s) | 1129 |
| AjnI | CCWGG | 3 cut(s) | 305, 1284, 1554 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1262, 1294 |
| Alw26I | GTCTC | 2 cut(s) | 156, 420 |
| AlwI | GGATC | 2 cut(s) | 775, 1179 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1610, 1634 |
| Ama87I | CYCGRG | 2 cut(s) | 758, 799 |
| AoxI | GGCC | 3 cut(s) | 549, 802, 897 |
| ApeKI | GCWGC | 4 cut(s) | 1103, 1153, 1239, 1715 |
| ApoI | RAATTY | 5 cut(s) | 254, 385, 912, 1190, 1571 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 307, 339, 398, 430, 1463, 1495 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 178 |
| AspS9I | GGNCC | 2 cut(s) | 640, 802 |
| AsuHPI | GGTGA | 6 cut(s) | 64, 148, 947, 1511, 1541, 1892 |
| AsuII | TTCGAA | 2 cut(s) | 404, 1160 |
| AvaI | CYCGRG | 2 cut(s) | 758, 799 |
| AvaII | GGWCC | 1 cut(s) | 640 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 948, 981 |
| BanI | GGYRCC | 2 cut(s) | 186, 293 |
| BanII | GRGCYC | 1 cut(s) | 876 |
| BbrPI | CACGTG | 1 cut(s) | 23 |
| BbsI | GAAGAC | 2 cut(s) | 893, 1836 |
| BbvI | GCAGC | 4 cut(s) | 1115, 1140, 1251, 1702 |
| BccI | CCATC | 3 cut(s) | 403, 1005, 1034 |
| BceAI | ACGGC | 2 cut(s) | 200, 1140 |
| BciT130I | CCWGG | 3 cut(s) | 307, 1286, 1556 |
| BcoDI | GTCTC | 2 cut(s) | 156, 420 |
| BcuI | ACTAGT | 1 cut(s) | 1129 |
| BfaI | CTAG | 5 cut(s) | 594, 657, 891, 1130, 1658 |
| BfmI | CTRYAG | 2 cut(s) | 268, 1237 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1124 |
| BglII | AGATCT | 1 cut(s) | 176 |
| BisI | GCNGC | 4 cut(s) | 1104, 1154, 1240, 1716 |
| BlsI | GCNGC | 4 cut(s) | 1105, 1155, 1241, 1717 |
| Bme1390I | CCNGG | 3 cut(s) | 307, 1286, 1556 |
| Bme18I | GGWCC | 1 cut(s) | 640 |
| BmeT110I | CYCGRG | 2 cut(s) | 758, 799 |
| BmgT120I | GGNCC | 2 cut(s) | 640, 802 |
| BmiI | GGNNCC | 7 cut(s) | 41, 159, 188, 295, 641, 873, 1216 |
| BmrFI | CCNGG | 3 cut(s) | 307, 1286, 1556 |
| BmrI | ACTGGG | 2 cut(s) | 673, 771 |
| BmsI | GCATC | 4 cut(s) | 1008, 1164, 1492, 1596 |
| BmuI | ACTGGG | 2 cut(s) | 673, 771 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1390 |
| BpiI | GAAGAC | 2 cut(s) | 893, 1836 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1598, 1630 |
| Bpu14I | TTCGAA | 2 cut(s) | 404, 1160 |
| BpuEI | CTTGAG | 2 cut(s) | 841, 1757 |
| BsaAI | YACGTR | 1 cut(s) | 23 |
| BsaHI | GRCGYC | 1 cut(s) | 1323 |
| BsaI | GGTCTC | 1 cut(s) | 156 |
| BsaJI | CCNNGG | 5 cut(s) | 14, 305, 306, 854, 1445 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1796, 1799, 1826, 1829 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 49, 167, 210, 764, 1224 |
| Bse1I | ACTGG | 3 cut(s) | 668, 777, 1154 |
| Bse3DI | GCAATG | 1 cut(s) | 1623 |
| BseBI | CCWGG | 3 cut(s) | 307, 1286, 1556 |
| BseDI | CCNNGG | 5 cut(s) | 14, 305, 306, 854, 1445 |
| BseGI | GGATG | 5 cut(s) | 109, 253, 465, 674, 1417 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 49, 167, 210, 764, 1224 |
| BseMI | GCAATG | 1 cut(s) | 1623 |
| BseNI | ACTGG | 3 cut(s) | 668, 777, 1154 |
| BseRI | GAGGAG | 7 cut(s) | 1754, 1804, 1807, 1810, 1813, 1816, 1819 |
| BseXI | GCAGC | 4 cut(s) | 1115, 1140, 1251, 1702 |
| BsgI | GTGCAG | 2 cut(s) | 759, 1105 |
| BshFI | GGCC | 3 cut(s) | 551, 804, 899 |
| BshNI | GGYRCC | 2 cut(s) | 186, 293 |
| BsiHKCI | CYCGRG | 2 cut(s) | 758, 799 |
| BsiSI | CCGG | 1 cut(s) | 1107 |
| BslFI | GGGAC | 5 cut(s) | 653, 680, 757, 1398, 1771 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 49, 167, 210, 764, 1224 |
| BsmAI | GTCTC | 2 cut(s) | 156, 420 |
| BsmFI | GGGAC | 5 cut(s) | 653, 680, 757, 1398, 1771 |
| BsmI | GAATGC | 1 cut(s) | 1156 |
| BsnI | GGCC | 3 cut(s) | 551, 804, 899 |
| Bso31I | GGTCTC | 1 cut(s) | 156 |
| BsoBI | CYCGRG | 2 cut(s) | 758, 799 |
| Bsp119I | TTCGAA | 2 cut(s) | 404, 1160 |
| Bsp1286I | GDGCHC | 1 cut(s) | 876 |
| Bsp143I | GATC | 6 cut(s) | 176, 767, 1084, 1184, 1416, 1794 |
| Bsp19I | CCATGG | 1 cut(s) | 14 |
| BspANI | GGCC | 3 cut(s) | 551, 804, 899 |
| BspHI | TCATGA | 2 cut(s) | 229, 648 |
| BspLI | GGNNCC | 7 cut(s) | 41, 159, 188, 295, 641, 873, 1216 |
| BspMAI | CTGCAG | 1 cut(s) | 1241 |
| BspPI | GGATC | 2 cut(s) | 775, 1179 |
| BspT104I | TTCGAA | 2 cut(s) | 404, 1160 |
| BspT107I | GGYRCC | 2 cut(s) | 186, 293 |
| BspTNI | GGTCTC | 1 cut(s) | 156 |
| BsrDI | GCAATG | 1 cut(s) | 1623 |
| BsrI | ACTGG | 3 cut(s) | 668, 777, 1154 |
| BssECI | CCNNGG | 5 cut(s) | 14, 305, 306, 854, 1445 |
| BssMI | GATC | 6 cut(s) | 176, 767, 1084, 1184, 1416, 1794 |
| BssNI | GRCGYC | 1 cut(s) | 1323 |
| BssT1I | CCWWGG | 3 cut(s) | 14, 854, 1445 |
| Bst2UI | CCWGG | 3 cut(s) | 307, 1286, 1556 |
| Bst4CI | ACNGT | 4 cut(s) | 964, 1294, 1695, 1762 |
| Bst6I | CTCTTC | 5 cut(s) | 803, 1740, 1837, 1877, 1878 |
| BstACI | GRCGYC | 1 cut(s) | 1323 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1133 |
| BstBAI | YACGTR | 1 cut(s) | 23 |
| BstBI | TTCGAA | 2 cut(s) | 404, 1160 |
| BstC8I | GCNNGC | 3 cut(s) | 1047, 1120, 1612 |
| BstDSI | CCRYGG | 1 cut(s) | 14 |
| BstF5I | GGATG | 5 cut(s) | 109, 253, 465, 674, 1417 |
| BstKTI | GATC | 6 cut(s) | 179, 770, 1087, 1187, 1419, 1797 |
| BstMAI | GTCTC | 2 cut(s) | 156, 420 |
| BstMBI | GATC | 6 cut(s) | 176, 767, 1084, 1184, 1416, 1794 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 398, 1051, 1124, 1133, 1142 |
| BstNI | CCWGG | 3 cut(s) | 307, 1286, 1556 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1390 |
| BstSCI | CCNGG | 3 cut(s) | 305, 1284, 1554 |
| BstSFI | CTRYAG | 2 cut(s) | 268, 1237 |
| BstV1I | GCAGC | 4 cut(s) | 1115, 1140, 1251, 1702 |
| BstV2I | GAAGAC | 2 cut(s) | 893, 1836 |
| BstX2I | RGATCY | 2 cut(s) | 176, 1184 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 989 |
| BstYI | RGATCY | 2 cut(s) | 176, 1184 |
| BsuRI | GGCC | 3 cut(s) | 551, 804, 899 |
| BtgI | CCRYGG | 1 cut(s) | 14 |
| BtgZI | GCGATG | 1 cut(s) | 1126 |
| BtsCI | GGATG | 5 cut(s) | 109, 253, 465, 674, 1417 |
| BtsI | GCAGTG | 1 cut(s) | 1678 |
| BtsIMutI | CAGTG | 3 cut(s) | 742, 1147, 1678 |
| Cac8I | GCNNGC | 3 cut(s) | 1047, 1120, 1612 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1610, 1634 |
| CciI | TCATGA | 2 cut(s) | 229, 648 |
| Cfr13I | GGNCC | 2 cut(s) | 640, 802 |
| DpnI | GATC | 6 cut(s) | 178, 769, 1086, 1186, 1418, 1796 |
| DpnII | GATC | 6 cut(s) | 176, 767, 1084, 1184, 1416, 1794 |
| DraIII | CACNNNGTG | 1 cut(s) | 1224 |
| EaeI | YGGCCR | 1 cut(s) | 549 |
| Eam1104I | CTCTTC | 5 cut(s) | 803, 1740, 1837, 1877, 1878 |
| EarI | CTCTTC | 5 cut(s) | 803, 1740, 1837, 1877, 1878 |
| Eco130I | CCWWGG | 3 cut(s) | 14, 854, 1445 |
| Eco24I | GRGCYC | 1 cut(s) | 876 |
| Eco31I | GGTCTC | 1 cut(s) | 156 |
| Eco47I | GGWCC | 1 cut(s) | 640 |
| Eco57I | CTGAAG | 2 cut(s) | 1339, 1508 |
| Eco72I | CACGTG | 1 cut(s) | 23 |
| Eco88I | CYCGRG | 2 cut(s) | 758, 799 |
| EcoRII | CCWGG | 3 cut(s) | 305, 1284, 1554 |
| EcoT14I | CCWWGG | 3 cut(s) | 14, 854, 1445 |
| EcoT38I | GRGCYC | 1 cut(s) | 876 |
| ErhI | CCWWGG | 3 cut(s) | 14, 854, 1445 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 465, 497 |
| FaqI | GGGAC | 5 cut(s) | 653, 680, 757, 1398, 1771 |
| Fnu4HI | GCNGC | 4 cut(s) | 1104, 1154, 1240, 1716 |
| FokI | GGATG | 5 cut(s) | 116, 260, 472, 661, 1424 |
| FriOI | GRGCYC | 1 cut(s) | 876 |
| Fsp4HI | GCNGC | 4 cut(s) | 1104, 1154, 1240, 1716 |
| FspBI | CTAG | 5 cut(s) | 594, 657, 891, 1130, 1658 |
| GluI | GCNGC | 4 cut(s) | 1104, 1154, 1240, 1716 |
| HaeIII | GGCC | 3 cut(s) | 551, 804, 899 |
| HapII | CCGG | 1 cut(s) | 1107 |
| Hin1I | GRCGYC | 1 cut(s) | 1323 |
| HindIII | AAGCTT | 2 cut(s) | 65, 496 |
| HpaII | CCGG | 1 cut(s) | 1107 |
| HphI | GGTGA | 6 cut(s) | 64, 148, 947, 1511, 1541, 1892 |
| Hpy166II | GTNNAC | 1 cut(s) | 55 |
| Hpy188III | TCNNGA | 5 cut(s) | 230, 542, 649, 820, 1319 |
| Hpy8I | GTNNAC | 1 cut(s) | 55 |
| Hpy99I | CGWCG | 4 cut(s) | 706, 1325, 1403, 1580 |
| HpyCH4III | ACNGT | 4 cut(s) | 964, 1294, 1695, 1762 |
| HpyCH4IV | ACGT | 2 cut(s) | 22, 1323 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 398, 1051, 1124, 1133, 1142 |
| HpySE526I | ACGT | 2 cut(s) | 22, 1323 |
| Hsp92I | GRCGYC | 1 cut(s) | 1323 |
| Kzo9I | GATC | 6 cut(s) | 176, 767, 1084, 1184, 1416, 1794 |
| LmnI | GCTCC | 5 cut(s) | 163, 597, 871, 1092, 1732 |
| Lsp1109I | GCAGC | 4 cut(s) | 1115, 1140, 1251, 1702 |
| LweI | GCATC | 4 cut(s) | 1008, 1164, 1492, 1596 |
| MaeI | CTAG | 5 cut(s) | 594, 657, 891, 1130, 1658 |
| MaeII | ACGT | 2 cut(s) | 22, 1323 |
| MaeIII | GTNAC | 5 cut(s) | 327, 439, 659, 1550, 1640 |
| MalI | GATC | 6 cut(s) | 178, 769, 1086, 1186, 1418, 1796 |
| MboI | GATC | 6 cut(s) | 176, 767, 1084, 1184, 1416, 1794 |
| MflI | RGATCY | 2 cut(s) | 176, 1184 |
| MhlI | GDGCHC | 1 cut(s) | 876 |
| MluCI | AATT | 9 cut(s) | 196, 254, 385, 553, 912, 1016, 1190, 1571, 1664 |
| MlyI | GAGTC | 9 cut(s) | 422, 518, 528, 539, 654, 680, 683, 791, 1380 |
| MmeI | TCCRAC | 1 cut(s) | 711 |
| MroXI | GAANNNNTTC | 1 cut(s) | 178 |
| MseI | TTAA | 3 cut(s) | 350, 1019, 1701 |
| MslI | CAYNNNNRTG | 1 cut(s) | 987 |
| MspI | CCGG | 1 cut(s) | 1107 |
| MspR9I | CCNGG | 3 cut(s) | 307, 1286, 1556 |
| Mva1269I | GAATGC | 1 cut(s) | 1156 |
| MvaI | CCWGG | 3 cut(s) | 307, 1286, 1556 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 398, 1051, 1124, 1133, 1142 |
| NcoI | CCATGG | 1 cut(s) | 14 |
| NdeII | GATC | 6 cut(s) | 176, 767, 1084, 1184, 1416, 1794 |
| NlaIV | GGNNCC | 7 cut(s) | 41, 159, 188, 295, 641, 873, 1216 |
| NmeAIII | GCCGAG | 2 cut(s) | 506, 527 |
| NmuCI | GTSAC | 2 cut(s) | 439, 659 |
| NspV | TTCGAA | 2 cut(s) | 404, 1160 |
| PagI | TCATGA | 2 cut(s) | 229, 648 |
| PasI | CCCWGGG | 1 cut(s) | 306 |
| PctI | GAATGC | 1 cut(s) | 1156 |
| PdmI | GAANNNNTTC | 1 cut(s) | 178 |
| PfeI | GAWTC | 6 cut(s) | 421, 787, 938, 1350, 1520, 1580 |
| PflFI | GACNNNGTC | 2 cut(s) | 537, 644 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 167, 1224 |
| PkrI | GCNGC | 4 cut(s) | 1105, 1155, 1241, 1717 |
| PleI | GAGTC | 9 cut(s) | 421, 518, 528, 539, 653, 679, 683, 791, 1380 |
| PmaCI | CACGTG | 1 cut(s) | 23 |
| PmlI | CACGTG | 1 cut(s) | 23 |
| PpsI | GAGTC | 9 cut(s) | 421, 518, 528, 539, 653, 679, 683, 791, 1380 |
| Ppu21I | YACGTR | 1 cut(s) | 23 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1390 |
| Psp6I | CCWGG | 3 cut(s) | 305, 1284, 1554 |
| PspCI | CACGTG | 1 cut(s) | 23 |
| PspGI | CCWGG | 3 cut(s) | 305, 1284, 1554 |
| PspN4I | GGNNCC | 7 cut(s) | 41, 159, 188, 295, 641, 873, 1216 |
| PspPI | GGNCC | 2 cut(s) | 640, 802 |
| PstI | CTGCAG | 1 cut(s) | 1241 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1610, 1634 |
| PsuI | RGATCY | 2 cut(s) | 176, 1184 |
| PsyI | GACNNNGTC | 2 cut(s) | 537, 644 |
| RseI | CAYNNNNRTG | 1 cut(s) | 987 |
| SaqAI | TTAA | 3 cut(s) | 350, 1019, 1701 |
| SatI | GCNGC | 4 cut(s) | 1104, 1154, 1240, 1716 |
| Sau3AI | GATC | 6 cut(s) | 176, 767, 1084, 1184, 1416, 1794 |
| Sau96I | GGNCC | 2 cut(s) | 640, 802 |
| SchI | GAGTC | 9 cut(s) | 422, 518, 528, 539, 654, 680, 683, 791, 1380 |
| ScrFI | CCNGG | 3 cut(s) | 307, 1286, 1556 |
| SduI | GDGCHC | 1 cut(s) | 876 |
| SfaNI | GCATC | 4 cut(s) | 1008, 1164, 1492, 1596 |
| SfcI | CTRYAG | 2 cut(s) | 268, 1237 |
| SfuI | TTCGAA | 2 cut(s) | 404, 1160 |
| SinI | GGWCC | 1 cut(s) | 640 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 987 |
| SmlI | CTYRAG | 2 cut(s) | 820, 1736 |
| SmoI | CTYRAG | 2 cut(s) | 820, 1736 |
| SpeI | ACTAGT | 1 cut(s) | 1129 |
| Sse9I | AATT | 9 cut(s) | 196, 254, 385, 553, 912, 1016, 1190, 1571, 1664 |
| SspI | AATATT | 2 cut(s) | 348, 971 |
| SspMI | CTAG | 5 cut(s) | 594, 657, 891, 1130, 1658 |
| StyD4I | CCNGG | 3 cut(s) | 305, 1284, 1554 |
| StyI | CCWWGG | 3 cut(s) | 14, 854, 1445 |
| TaaI | ACNGT | 4 cut(s) | 964, 1294, 1695, 1762 |
| TaiI | ACGT | 2 cut(s) | 25, 1326 |
| TaqII | GACCGA | 2 cut(s) | 527, 657 |
| TasI | AATT | 9 cut(s) | 196, 254, 385, 553, 912, 1016, 1190, 1571, 1664 |
| TfiI | GAWTC | 6 cut(s) | 421, 787, 938, 1350, 1520, 1580 |
| Tru1I | TTAA | 3 cut(s) | 350, 1019, 1701 |
| Tru9I | TTAA | 3 cut(s) | 350, 1019, 1701 |
| TscAI | CASTG | 3 cut(s) | 742, 1154, 1678 |
| TseFI | GTSAC | 2 cut(s) | 439, 659 |
| TseI | GCWGC | 4 cut(s) | 1103, 1153, 1239, 1715 |
| Tsp45I | GTSAC | 2 cut(s) | 439, 659 |
| TspDTI | ATGAA | 7 cut(s) | 17, 267, 369, 476, 729, 1333, 1687 |
| TspGWI | ACGGA | 1 cut(s) | 1105 |
| TspRI | CASTG | 3 cut(s) | 742, 1154, 1678 |
| Tth111I | GACNNNGTC | 2 cut(s) | 537, 644 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 167, 1224 |
| VpaK11BI | GGWCC | 1 cut(s) | 640 |
| XapI | RAATTY | 5 cut(s) | 254, 385, 912, 1190, 1571 |
| XmnI | GAANNNNTTC | 1 cut(s) | 178 |
| XspI | CTAG | 5 cut(s) | 594, 657, 891, 1130, 1658 |
| ZraI | GACGTC | 1 cut(s) | 1324 |