Prupe.1G481200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
40178426 .. 40182125
3700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G481200.1

Sequence Viewer

Length: 1896 bp
ATGAAGTGGTCGCCATGGACACGTGGGGGAACAAAGAGGTTCCATGTCAAGGTGAACCAGATAAAGCTTGAAGGGTTTGACTACAATGGAAAGGTGGTGGGGGATGAGAAGCAGAGGGTTGGTGTGGTGGTTGAGGTGAAATGGAAAGGGTCTCAGGCTCCATTCTATGGCAGAAGATCTTCACGGCACCAGAAGAATTACACCAGCCATAGGTTTCTGAGCAGAGGTCATGAGGTCGTTGAATGGGATGATGAATTTCAGAGCCTCTGTAGTTTTGGGTGGAAGCAAGGTGGTGCCTTTAGCCCCTGGGATTTGACTTTCACTTTGTTACATGGGGAGAGTGCAATATTAAAGGGTATGGTGGTTCTGGGGAAGGTTTCATTGAATTTAGCTGAAATGGCTTCGAAGATGGAGTCTCAGATTCAGAGGAAGCTCTCTGTCACTTTGAAAATGGAAGGGATGAACCCCAGAGAAGCTACCCTTCTGGTTTGTCTAAGCTTTTCTGAGGTCAGAAACTCACATGACTCGGCAGGACTCGGTCAAGACTCGGCCAATTCAGACAAGGACAGGTTGCTTCGAGGTGTAAGCTACTCTAGGAGCTTTAGAAAGACGAGCAACAATGAGAGAAAGGGTCATGGGGACCGAGTCATGACTTCTAGTGACTGGGACGAGTCATCCCTCCTGTCCGACTCAGAAGGGTCGTCGCCAGAAAATGAACTCAGCTCGAATGGTGTCAGTGCAGAGTTGAGTTCAAAGCCCGAGTTGGGATCGTCCCCCAGTTGTTTGATTCGGTTTGACTCGGGCCAGAAGAGTTGGTTCTTGAGAAAGCGAAAGTGGTTGAGTGGCAAACCACCAAGGAGAAGAAAAGTGGAGCCCTATGCTGAGAAGACTAGCAAGGCCAATGCACTTCAAATTTCTGCTGACAACAATCTCGGTGATTCTATACAGAAATCAGATACTACTGTTGAATATTCTTCAAACCACCAACATGGAGATTGCATCACAAGTAGATGGGAATTAAAGGAAGTATTCAGCAGAGATGGGCTGGCAAAGCTCAAAACCAATGTGTTCTTTGCTTCTTTCGATCAACGGAGCGAAAAGGCAGCCGGAGAGAGTGCCTGCACGGCACTAGTTGCAGTCATCGCCCACTGGCTGCATTCGAACCAAGACACGATGCCTACAAGATCCAAATTCGACAGCCTCATAACAGAAGGTTCCACAGAGTGGCAAAAACTCTGCAGCAACGAAACTTACATAAACTTATTTCCCAACAAACACTTCGACCTGGAAACAGTTTTGGAAGCTGATGTTAGACCTCTCGACGTCTTGCCTGACAAGTCTTTCATCGGATTCTTCAGCCCTGAGAAGTTCGAGTGCTTGAAGGGACTCATGTCGTTCGACGAGATATGGGATGAGATCAATAGAAACACCATGTTAGACAAACCAAGGATATACATAGTGAGCTGGAATGACCATTTTTTTGTGCTGAAGGTTGAAGGTGATGCTTACTATATCATGGATTCTTTGGGTGAGAGGCTGTTTGAAGGGTGTAACCAGGCATACATACTAAAATTCGACGATTCGAGCATCATGTATGGGAAAGCAGAGGCTGGCTCAGAGGACATTGCAGGGTCTGAGAGTAACAAGGAGGAAAGCCTAGAAGAATTATGCAGTGGAAAGGAGTGTTGCAGACAGTTCATTAAAAGATTTCTTGCTGCCATACCACTTGGGGAGCTTGAGGAGGAAGAGAAAAAGGGGACAGTTTCTACTTTACCTCTCCACAGGCGTTTGCAGATCGAGTTCCACTACACCTCCTCCTCCTCCTCCTCCTCTTCCACTTTGTCTTCTGCAACTTCTTCCACTTACTCTCTCTTCTCAGGTGAAGAGAGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

632

Amino Acids

71.06

Weight (kDa)

6.09

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1326
AccB1I GGYRCC 2 cut(s) 186, 293
AccB7I CCANNNNNTGG 2 cut(s) 167, 1224
AclWI GGATC 2 cut(s) 775, 1179
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 5 cut(s) 254, 385, 912, 1190, 1571
AcuI CTGAAG 2 cut(s) 1339, 1508
AcvI CACGTG 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 1323
AdeI CACNNNGTG 1 cut(s) 1224
AfiI CCNNNNNNNGG 5 cut(s) 49, 167, 210, 764, 1224
AflIII ACRYGT 1 cut(s) 20
AhlI ACTAGT 1 cut(s) 1129
AjnI CCWGG 3 cut(s) 305, 1284, 1554
AjuI GAANNNNNNNTTGG 2 cut(s) 1262, 1294
Alw26I GTCTC 2 cut(s) 156, 420
AlwI GGATC 2 cut(s) 775, 1179
AlwNI CAGNNNCTG 2 cut(s) 1610, 1634
Ama87I CYCGRG 2 cut(s) 758, 799
AoxI GGCC 3 cut(s) 549, 802, 897
ApeKI GCWGC 4 cut(s) 1103, 1153, 1239, 1715
ApoI RAATTY 5 cut(s) 254, 385, 912, 1190, 1571
ArsI GACNNNNNNTTYG 6 cut(s) 307, 339, 398, 430, 1463, 1495
Asp700I GAANNNNTTC 1 cut(s) 178
AspS9I GGNCC 2 cut(s) 640, 802
AsuHPI GGTGA 6 cut(s) 64, 148, 947, 1511, 1541, 1892
AsuII TTCGAA 2 cut(s) 404, 1160
AvaI CYCGRG 2 cut(s) 758, 799
AvaII GGWCC 1 cut(s) 640
BaeI ACNNNNGTAYC 2 cut(s) 948, 981
BanI GGYRCC 2 cut(s) 186, 293
BanII GRGCYC 1 cut(s) 876
BbrPI CACGTG 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 893, 1836
BbvI GCAGC 4 cut(s) 1115, 1140, 1251, 1702
BccI CCATC 3 cut(s) 403, 1005, 1034
BceAI ACGGC 2 cut(s) 200, 1140
BciT130I CCWGG 3 cut(s) 307, 1286, 1556
BcoDI GTCTC 2 cut(s) 156, 420
BcuI ACTAGT 1 cut(s) 1129
BfaI CTAG 5 cut(s) 594, 657, 891, 1130, 1658
BfmI CTRYAG 2 cut(s) 268, 1237
BglI GCCNNNNNGGC 1 cut(s) 1124
BglII AGATCT 1 cut(s) 176
BisI GCNGC 4 cut(s) 1104, 1154, 1240, 1716
BlsI GCNGC 4 cut(s) 1105, 1155, 1241, 1717
Bme1390I CCNGG 3 cut(s) 307, 1286, 1556
Bme18I GGWCC 1 cut(s) 640
BmeT110I CYCGRG 2 cut(s) 758, 799
BmgT120I GGNCC 2 cut(s) 640, 802
BmiI GGNNCC 7 cut(s) 41, 159, 188, 295, 641, 873, 1216
BmrFI CCNGG 3 cut(s) 307, 1286, 1556
BmrI ACTGGG 2 cut(s) 673, 771
BmsI GCATC 4 cut(s) 1008, 1164, 1492, 1596
BmuI ACTGGG 2 cut(s) 673, 771
BoxI GACNNNNGTC 1 cut(s) 1390
BpiI GAAGAC 2 cut(s) 893, 1836
BplI GAGNNNNNCTC 2 cut(s) 1598, 1630
Bpu14I TTCGAA 2 cut(s) 404, 1160
BpuEI CTTGAG 2 cut(s) 841, 1757
BsaAI YACGTR 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 1323
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 5 cut(s) 14, 305, 306, 854, 1445
BsaXI ACNNNNNCTCC 4 cut(s) 1796, 1799, 1826, 1829
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 167, 210, 764, 1224
Bse1I ACTGG 3 cut(s) 668, 777, 1154
Bse3DI GCAATG 1 cut(s) 1623
BseBI CCWGG 3 cut(s) 307, 1286, 1556
BseDI CCNNGG 5 cut(s) 14, 305, 306, 854, 1445
BseGI GGATG 5 cut(s) 109, 253, 465, 674, 1417
BseLI CCNNNNNNNGG 5 cut(s) 49, 167, 210, 764, 1224
BseMI GCAATG 1 cut(s) 1623
BseNI ACTGG 3 cut(s) 668, 777, 1154
BseRI GAGGAG 7 cut(s) 1754, 1804, 1807, 1810, 1813, 1816, 1819
BseXI GCAGC 4 cut(s) 1115, 1140, 1251, 1702
BsgI GTGCAG 2 cut(s) 759, 1105
BshFI GGCC 3 cut(s) 551, 804, 899
BshNI GGYRCC 2 cut(s) 186, 293
BsiHKCI CYCGRG 2 cut(s) 758, 799
BsiSI CCGG 1 cut(s) 1107
BslFI GGGAC 5 cut(s) 653, 680, 757, 1398, 1771
BslI CCNNNNNNNGG 5 cut(s) 49, 167, 210, 764, 1224
BsmAI GTCTC 2 cut(s) 156, 420
BsmFI GGGAC 5 cut(s) 653, 680, 757, 1398, 1771
BsmI GAATGC 1 cut(s) 1156
BsnI GGCC 3 cut(s) 551, 804, 899
Bso31I GGTCTC 1 cut(s) 156
BsoBI CYCGRG 2 cut(s) 758, 799
Bsp119I TTCGAA 2 cut(s) 404, 1160
Bsp1286I GDGCHC 1 cut(s) 876
Bsp143I GATC 6 cut(s) 176, 767, 1084, 1184, 1416, 1794
Bsp19I CCATGG 1 cut(s) 14
BspANI GGCC 3 cut(s) 551, 804, 899
BspHI TCATGA 2 cut(s) 229, 648
BspLI GGNNCC 7 cut(s) 41, 159, 188, 295, 641, 873, 1216
BspMAI CTGCAG 1 cut(s) 1241
BspPI GGATC 2 cut(s) 775, 1179
BspT104I TTCGAA 2 cut(s) 404, 1160
BspT107I GGYRCC 2 cut(s) 186, 293
BspTNI GGTCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 1623
BsrI ACTGG 3 cut(s) 668, 777, 1154
BssECI CCNNGG 5 cut(s) 14, 305, 306, 854, 1445
BssMI GATC 6 cut(s) 176, 767, 1084, 1184, 1416, 1794
BssNI GRCGYC 1 cut(s) 1323
BssT1I CCWWGG 3 cut(s) 14, 854, 1445
Bst2UI CCWGG 3 cut(s) 307, 1286, 1556
Bst4CI ACNGT 4 cut(s) 964, 1294, 1695, 1762
Bst6I CTCTTC 5 cut(s) 803, 1740, 1837, 1877, 1878
BstACI GRCGYC 1 cut(s) 1323
BstAPI GCANNNNNTGC 1 cut(s) 1133
BstBAI YACGTR 1 cut(s) 23
BstBI TTCGAA 2 cut(s) 404, 1160
BstC8I GCNNGC 3 cut(s) 1047, 1120, 1612
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 5 cut(s) 109, 253, 465, 674, 1417
BstKTI GATC 6 cut(s) 179, 770, 1087, 1187, 1419, 1797
BstMAI GTCTC 2 cut(s) 156, 420
BstMBI GATC 6 cut(s) 176, 767, 1084, 1184, 1416, 1794
BstMWI GCNNNNNNNGC 5 cut(s) 398, 1051, 1124, 1133, 1142
BstNI CCWGG 3 cut(s) 307, 1286, 1556
BstPAI GACNNNNGTC 1 cut(s) 1390
BstSCI CCNGG 3 cut(s) 305, 1284, 1554
BstSFI CTRYAG 2 cut(s) 268, 1237
BstV1I GCAGC 4 cut(s) 1115, 1140, 1251, 1702
BstV2I GAAGAC 2 cut(s) 893, 1836
BstX2I RGATCY 2 cut(s) 176, 1184
BstXI CCANNNNNNTGG 1 cut(s) 989
BstYI RGATCY 2 cut(s) 176, 1184
BsuRI GGCC 3 cut(s) 551, 804, 899
BtgI CCRYGG 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 1126
BtsCI GGATG 5 cut(s) 109, 253, 465, 674, 1417
BtsI GCAGTG 1 cut(s) 1678
BtsIMutI CAGTG 3 cut(s) 742, 1147, 1678
Cac8I GCNNGC 3 cut(s) 1047, 1120, 1612
CaiI CAGNNNCTG 2 cut(s) 1610, 1634
CciI TCATGA 2 cut(s) 229, 648
Cfr13I GGNCC 2 cut(s) 640, 802
DpnI GATC 6 cut(s) 178, 769, 1086, 1186, 1418, 1796
DpnII GATC 6 cut(s) 176, 767, 1084, 1184, 1416, 1794
DraIII CACNNNGTG 1 cut(s) 1224
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 5 cut(s) 803, 1740, 1837, 1877, 1878
EarI CTCTTC 5 cut(s) 803, 1740, 1837, 1877, 1878
Eco130I CCWWGG 3 cut(s) 14, 854, 1445
Eco24I GRGCYC 1 cut(s) 876
Eco31I GGTCTC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 640
Eco57I CTGAAG 2 cut(s) 1339, 1508
Eco72I CACGTG 1 cut(s) 23
Eco88I CYCGRG 2 cut(s) 758, 799
EcoRII CCWGG 3 cut(s) 305, 1284, 1554
EcoT14I CCWWGG 3 cut(s) 14, 854, 1445
EcoT38I GRGCYC 1 cut(s) 876
ErhI CCWWGG 3 cut(s) 14, 854, 1445
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FaqI GGGAC 5 cut(s) 653, 680, 757, 1398, 1771
Fnu4HI GCNGC 4 cut(s) 1104, 1154, 1240, 1716
FokI GGATG 5 cut(s) 116, 260, 472, 661, 1424
FriOI GRGCYC 1 cut(s) 876
Fsp4HI GCNGC 4 cut(s) 1104, 1154, 1240, 1716
FspBI CTAG 5 cut(s) 594, 657, 891, 1130, 1658
GluI GCNGC 4 cut(s) 1104, 1154, 1240, 1716
HaeIII GGCC 3 cut(s) 551, 804, 899
HapII CCGG 1 cut(s) 1107
Hin1I GRCGYC 1 cut(s) 1323
HindIII AAGCTT 2 cut(s) 65, 496
HpaII CCGG 1 cut(s) 1107
HphI GGTGA 6 cut(s) 64, 148, 947, 1511, 1541, 1892
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 5 cut(s) 230, 542, 649, 820, 1319
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 4 cut(s) 706, 1325, 1403, 1580
HpyCH4III ACNGT 4 cut(s) 964, 1294, 1695, 1762
HpyCH4IV ACGT 2 cut(s) 22, 1323
HpyF10VI GCNNNNNNNGC 5 cut(s) 398, 1051, 1124, 1133, 1142
HpySE526I ACGT 2 cut(s) 22, 1323
Hsp92I GRCGYC 1 cut(s) 1323
Kzo9I GATC 6 cut(s) 176, 767, 1084, 1184, 1416, 1794
LmnI GCTCC 5 cut(s) 163, 597, 871, 1092, 1732
Lsp1109I GCAGC 4 cut(s) 1115, 1140, 1251, 1702
LweI GCATC 4 cut(s) 1008, 1164, 1492, 1596
MaeI CTAG 5 cut(s) 594, 657, 891, 1130, 1658
MaeII ACGT 2 cut(s) 22, 1323
MaeIII GTNAC 5 cut(s) 327, 439, 659, 1550, 1640
MalI GATC 6 cut(s) 178, 769, 1086, 1186, 1418, 1796
MboI GATC 6 cut(s) 176, 767, 1084, 1184, 1416, 1794
MflI RGATCY 2 cut(s) 176, 1184
MhlI GDGCHC 1 cut(s) 876
MluCI AATT 9 cut(s) 196, 254, 385, 553, 912, 1016, 1190, 1571, 1664
MlyI GAGTC 9 cut(s) 422, 518, 528, 539, 654, 680, 683, 791, 1380
MmeI TCCRAC 1 cut(s) 711
MroXI GAANNNNTTC 1 cut(s) 178
MseI TTAA 3 cut(s) 350, 1019, 1701
MslI CAYNNNNRTG 1 cut(s) 987
MspI CCGG 1 cut(s) 1107
MspR9I CCNGG 3 cut(s) 307, 1286, 1556
Mva1269I GAATGC 1 cut(s) 1156
MvaI CCWGG 3 cut(s) 307, 1286, 1556
MwoI GCNNNNNNNGC 5 cut(s) 398, 1051, 1124, 1133, 1142
NcoI CCATGG 1 cut(s) 14
NdeII GATC 6 cut(s) 176, 767, 1084, 1184, 1416, 1794
NlaIV GGNNCC 7 cut(s) 41, 159, 188, 295, 641, 873, 1216
NmeAIII GCCGAG 2 cut(s) 506, 527
NmuCI GTSAC 2 cut(s) 439, 659
NspV TTCGAA 2 cut(s) 404, 1160
PagI TCATGA 2 cut(s) 229, 648
PasI CCCWGGG 1 cut(s) 306
PctI GAATGC 1 cut(s) 1156
PdmI GAANNNNTTC 1 cut(s) 178
PfeI GAWTC 6 cut(s) 421, 787, 938, 1350, 1520, 1580
PflFI GACNNNGTC 2 cut(s) 537, 644
PflMI CCANNNNNTGG 2 cut(s) 167, 1224
PkrI GCNGC 4 cut(s) 1105, 1155, 1241, 1717
PleI GAGTC 9 cut(s) 421, 518, 528, 539, 653, 679, 683, 791, 1380
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
PpsI GAGTC 9 cut(s) 421, 518, 528, 539, 653, 679, 683, 791, 1380
Ppu21I YACGTR 1 cut(s) 23
PshAI GACNNNNGTC 1 cut(s) 1390
Psp6I CCWGG 3 cut(s) 305, 1284, 1554
PspCI CACGTG 1 cut(s) 23
PspGI CCWGG 3 cut(s) 305, 1284, 1554
PspN4I GGNNCC 7 cut(s) 41, 159, 188, 295, 641, 873, 1216
PspPI GGNCC 2 cut(s) 640, 802
PstI CTGCAG 1 cut(s) 1241
PstNI CAGNNNCTG 2 cut(s) 1610, 1634
PsuI RGATCY 2 cut(s) 176, 1184
PsyI GACNNNGTC 2 cut(s) 537, 644
RseI CAYNNNNRTG 1 cut(s) 987
SaqAI TTAA 3 cut(s) 350, 1019, 1701
SatI GCNGC 4 cut(s) 1104, 1154, 1240, 1716
Sau3AI GATC 6 cut(s) 176, 767, 1084, 1184, 1416, 1794
Sau96I GGNCC 2 cut(s) 640, 802
SchI GAGTC 9 cut(s) 422, 518, 528, 539, 654, 680, 683, 791, 1380
ScrFI CCNGG 3 cut(s) 307, 1286, 1556
SduI GDGCHC 1 cut(s) 876
SfaNI GCATC 4 cut(s) 1008, 1164, 1492, 1596
SfcI CTRYAG 2 cut(s) 268, 1237
SfuI TTCGAA 2 cut(s) 404, 1160
SinI GGWCC 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 2 cut(s) 820, 1736
SmoI CTYRAG 2 cut(s) 820, 1736
SpeI ACTAGT 1 cut(s) 1129
Sse9I AATT 9 cut(s) 196, 254, 385, 553, 912, 1016, 1190, 1571, 1664
SspI AATATT 2 cut(s) 348, 971
SspMI CTAG 5 cut(s) 594, 657, 891, 1130, 1658
StyD4I CCNGG 3 cut(s) 305, 1284, 1554
StyI CCWWGG 3 cut(s) 14, 854, 1445
TaaI ACNGT 4 cut(s) 964, 1294, 1695, 1762
TaiI ACGT 2 cut(s) 25, 1326
TaqII GACCGA 2 cut(s) 527, 657
TasI AATT 9 cut(s) 196, 254, 385, 553, 912, 1016, 1190, 1571, 1664
TfiI GAWTC 6 cut(s) 421, 787, 938, 1350, 1520, 1580
Tru1I TTAA 3 cut(s) 350, 1019, 1701
Tru9I TTAA 3 cut(s) 350, 1019, 1701
TscAI CASTG 3 cut(s) 742, 1154, 1678
TseFI GTSAC 2 cut(s) 439, 659
TseI GCWGC 4 cut(s) 1103, 1153, 1239, 1715
Tsp45I GTSAC 2 cut(s) 439, 659
TspDTI ATGAA 7 cut(s) 17, 267, 369, 476, 729, 1333, 1687
TspGWI ACGGA 1 cut(s) 1105
TspRI CASTG 3 cut(s) 742, 1154, 1678
Tth111I GACNNNGTC 2 cut(s) 537, 644
Van91I CCANNNNNTGG 2 cut(s) 167, 1224
VpaK11BI GGWCC 1 cut(s) 640
XapI RAATTY 5 cut(s) 254, 385, 912, 1190, 1571
XmnI GAANNNNTTC 1 cut(s) 178
XspI CTAG 5 cut(s) 594, 657, 891, 1130, 1658
ZraI GACGTC 1 cut(s) 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.