Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8393369.1

Orthogroup ID

OG0009226

Physical Location & Seq

Genomic Coordinates Forward (+)

334 .. 951

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8393369.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgatgaagtggtcaccgtggccaggtggatcaacgaggaggtttcacgtgaaagtcaaccagctaaagcttcatggattttcatgtgaaaacgagagagaaaagacattgttgatcgaggtgaaatggaaaggttccaaaaagcatggaggtccgtccggaatgctaatggcgccgttttacggacgatcgaggtgtcagaaaaactgcaccggtaagggttttattggaaaaggtgaaatcgttgaatgggacgatgagtttcagagcctctgtaattttgggtcaaaacagagcggtggttgttttagtccttgggatttgaccttcactttgttacatggagagagtgcagaattgaaaagtgacatggcggttctggggagggtttcgatgaacttggcagaaatggcttcgaagatggatgctgagattcacacaaagctttctgtaaatttaaacatggaagggatgatcatcccaatcgaagctacccttttggtgagtcatttgaattgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

173

Amino Acids

19.3

Weight (kDa)

8.53

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25460 AT2G25460
fragaria_vesca	FvH4_2g29030
malus_domestica	MD00G1144300.v1.1 MD08G1150600.v1.1
prunus_persica	Prupe.1G481200_v2.0.a1
pyrus_communis	pycom08g12690 pycom15g11310 pycom15g11320
rosa_chinensis	RchiOBHm_Chr6g0297901
rosa_laevigata	RLG00000011552
rosa_multiflora	Rmu_co8393369.1_g000002 Rmu_sc0011097.1_g000011
rosa_roxburghii	Rroxscaffold_7G00170090 Rroxscaffold_7G00170100 Rroxscaffold_7G00178970
rosa_rugosa	Rorug06G0276800
rosa_samantha	Rh6AG387300 Rh6BG395700 Rh6CG401500 Rh6DG388000
rosa_wichuraiana	Rw6G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccBSI	CCGCTC	1 cut(s)	297
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	2 cut(s)	297, 374
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	454
AcvI	CACGTG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	23, 182
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	248, 361, 514
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	4 cut(s)	64, 70, 445, 491
AluI	AGCT	4 cut(s)	64, 70, 445, 491
AlwI	GGATC	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	454
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
AsiGI	ACCGGT	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	4 cut(s)	6, 133, 248, 514
AsuII	TTCGAA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	172
BbrPI	CACGTG	1 cut(s)	49
BccI	CCATC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	136, 174
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	17, 314
BsaWI	WCCGGW	2 cut(s)	158, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 182
Bse118I	RCCGGY	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	476
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	17, 314
BseGI	GGATG	3 cut(s)	430, 477, 477
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	2 cut(s)	23, 182
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	52
BsgI	GTGCAG	2 cut(s)	193, 372
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	172
BshTI	ACCGGT	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	159, 213
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	23, 182
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	416
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	4 cut(s)	29, 114, 188, 474
BspACI	CCGC	2 cut(s)	297, 374
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	421
BspEI	TCCGGA	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	136, 174
BspPI	GGATC	1 cut(s)	37
BspT104I	TTCGAA	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	17, 314
BssMI	GATC	4 cut(s)	29, 114, 188, 474
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	49
BstBI	TTCGAA	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	17
BstEII	GGTNACC	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	430, 477, 477
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	32, 117, 191, 477
BstMBI	GATC	4 cut(s)	29, 114, 188, 474
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 410
BstNI	CCWGG	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	3 cut(s)	430, 477, 477
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	152
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	6 cut(s)	74, 84, 146, 341, 370, 463
CviJI	RGCY	7 cut(s)	22, 64, 70, 270, 413, 445, 491
CviKI_1	RGCY	7 cut(s)	22, 64, 70, 270, 413, 445, 491
DdeI	CTNAG	1 cut(s)	429
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	4 cut(s)	31, 116, 190, 476
DpnII	GATC	4 cut(s)	29, 114, 188, 474
DraI	TTTAAA	1 cut(s)	459
EaeI	YGGCCR	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	152
Eco72I	CACGTG	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	314
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	6 cut(s)	77, 87, 149, 344, 373, 466
FaiI	YATR	6 cut(s)	75, 85, 147, 342, 371, 464
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	6 cut(s)	73, 83, 145, 340, 369, 462
FbaI	TGATCA	1 cut(s)	474
FokI	GGATG	3 cut(s)	437, 464, 484
GlaI	GCGC	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	2 cut(s)	159, 213
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	6 cut(s)	77, 87, 149, 344, 373, 466
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	2 cut(s)	68, 443
HinfI	GANTC	2 cut(s)	433, 505
HpaII	CCGG	2 cut(s)	159, 213
HphI	GGTGA	4 cut(s)	6, 133, 248, 514
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	201, 267
Hpy188III	TCNNGA	1 cut(s)	159
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	337, 461
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	210, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 410
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	6 cut(s)	77, 87, 149, 344, 373, 466
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
Kpn2I	TCCGGA	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	4 cut(s)	29, 114, 188, 474
LpnPI	CCDG	6 cut(s)	9, 36, 74, 172, 226, 365
LweI	GCATC	1 cut(s)	415
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	12, 336, 365
MalI	GATC	4 cut(s)	31, 116, 190, 476
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	4 cut(s)	29, 114, 188, 474
MboII	GAAGA	1 cut(s)	430
MlsI	TGGCCA	1 cut(s)	22
MluCI	AATT	4 cut(s)	277, 356, 454, 514
MluNI	TGGCCA	1 cut(s)	22
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	514
MnlI	CCTC	7 cut(s)	30, 33, 112, 143, 186, 281, 378
Mox20I	TGGCCA	1 cut(s)	22
MroI	TCCGGA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	22
MseI	TTAA	2 cut(s)	458, 520
Msp20I	TGGCCA	1 cut(s)	22
MspI	CCGG	2 cut(s)	159, 213
MspR9I	CCNGG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	172, 410
NarI	GGCGCC	1 cut(s)	173
NdeII	GATC	4 cut(s)	29, 114, 188, 474
NlaIII	CATG	6 cut(s)	77, 87, 149, 344, 373, 466
NlaIV	GGNNCC	2 cut(s)	136, 174
NmuCI	GTSAC	2 cut(s)	12, 365
NspV	TTCGAA	1 cut(s)	416
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	433
PinAI	ACCGGT	1 cut(s)	212
Ple19I	CGATCG	1 cut(s)	191
PleI	GAGTC	1 cut(s)	513
PluTI	GGCGCC	1 cut(s)	176
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	513
Ppu21I	YACGTR	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	22
PspCI	CACGTG	1 cut(s)	49
PspEI	GGTNACC	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	136, 174
PspPI	GGNCC	1 cut(s)	152
PvuI	CGATCG	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	458, 520
Sau3AI	GATC	4 cut(s)	29, 114, 188, 474
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	415
SfoI	GGCGCC	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	416
SinI	GGWCC	1 cut(s)	152
Sse9I	AATT	4 cut(s)	277, 356, 454, 514
SsiI	CCGC	2 cut(s)	297, 374
SspDI	GGCGCC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	5 cut(s)	117, 191, 392, 416, 486
TasI	AATT	4 cut(s)	277, 356, 454, 514
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	2 cut(s)	458, 520
Tru9I	TTAA	2 cut(s)	458, 520
TseFI	GTSAC	2 cut(s)	12, 365
Tsp45I	GTSAC	2 cut(s)	12, 365
TspDTI	ATGAA	4 cut(s)	20, 62, 72, 410
TspGWI	ACGGA	2 cut(s)	144, 198
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.