Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Reverse (-)

42437863 .. 42443142

Gene Structure 5280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0276800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAATTCAATCAAGAAGAAGCGAAAGAAGAAACTCCAGCTGGTTTCCTTTTGGCAGACGTCTGTAGGATACGTTTTGATTGCGTCTCGAAGAGAAGACGCGAAGAGCAGAAGAGAAGAAGATGCGAAGAAGTGCGGCTGTTTTGTCTCCACTAGATACGACCGTATCCGTGGCGTATCAAAATTAGGATCCGTTGGATACGCGTATCCGGGCCGTATCGCACCCGTATCCCGTATCGGTACGGGATACGAAGCCGAGATTCAACTGGAGGCTTCAATTTCATTCATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

97

Amino Acids

10.97

Weight (kDa)

9.95

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
AccII	CGCG	2 cut(s)	101, 203
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	2 cut(s)	183, 196
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	9, 263, 276
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	90, 151
AlwI	GGATC	2 cut(s)	183, 196
AoxI	GGCC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	210
BaeI	ACNNNNGTAYC	4 cut(s)	148, 148, 181, 181
BamHI	GGATCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	198
BciVI	GTATCC	6 cut(s)	62, 176, 191, 216, 238, 239
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	90, 151
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	63
BfuI	GTATCC	6 cut(s)	62, 176, 191, 216, 238, 239
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	2 cut(s)	20, 287
BpuMI	CCSGG	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	270
Bsh1236I	CGCG	2 cut(s)	101, 203
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	209
BsmAI	GTCTC	2 cut(s)	90, 151
BsmBI	CGTCTC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	188
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	213
BspFNI	CGCG	2 cut(s)	101, 203
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	183, 196
BspQI	GCTCTTC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	188
BssNI	GRCGYC	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	3 cut(s)	85, 98, 106
BstACI	GRCGYC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	169
BstFNI	CGCG	2 cut(s)	101, 203
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	2 cut(s)	90, 151
BstMBI	GATC	1 cut(s)	188
BstMCI	CGRYCG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	101, 203
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuI	GTATCC	6 cut(s)	62, 176, 191, 216, 238, 239
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	2 cut(s)	72, 107
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	5 cut(s)	40, 138, 213, 254, 272
CviKI_1	RGCY	5 cut(s)	40, 138, 213, 254, 272
CviQI	GTAC	1 cut(s)	240
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
Eam1104I	CTCTTC	3 cut(s)	85, 98, 106
EarI	CTCTTC	3 cut(s)	85, 98, 106
EcoRI	GAATTC	1 cut(s)	4
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	289
FaiI	YATR	1 cut(s)	287
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	2 cut(s)	20, 287
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	2 cut(s)	72, 107
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	289
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	209
Hpy188III	TCNNGA	2 cut(s)	13, 87
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	59, 72
HpySE526I	ACGT	2 cut(s)	59, 72
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	188
LguI	GCTCTTC	1 cut(s)	98
LpnPI	CCDG	4 cut(s)	26, 50, 222, 251
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	2 cut(s)	59, 72
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	9 cut(s)	28, 40, 102, 107, 115, 123, 128, 131, 139
MflI	RGATCY	1 cut(s)	188
MluCI	AATT	3 cut(s)	4, 182, 276
MluI	ACGCGT	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	1 cut(s)	262
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	101, 203
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	188
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	3 cut(s)	42, 62, 75
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	63
Sse9I	AATT	3 cut(s)	4, 182, 276
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	2 cut(s)	62, 75
TaqI	TCGA	1 cut(s)	88
TasI	AATT	3 cut(s)	4, 182, 276
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	259
TspDTI	ATGAA	3 cut(s)	17, 270, 274
TspGWI	ACGGA	2 cut(s)	158, 181
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.