Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Forward (+)

62405766 .. 62406395

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG395900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGAGGTTGGAACTTCATTCATTTCACAGGCTTCATACTTGCGTCTGTTCTCCTTTTGTCTGAAACCTGCCTGGCTAGTGTTCGATATTTTGGGAAAATTAGTCCCGGGTTTCAAGGAGCTCGGCAGGAGGATTGGATTGATAATGATGGGTTGTTTCTCTTGTCGAACTCAGCTGAATTTGGTTTTGGCTTCTACCCTACTCCCCAGGATGTCACATTGTTTCTGCTAGTTGTGATTCACATGAACACTTATGCAGTAGTCTGGGCTGCAAATAGGGGTTCTCCAGTTTCAAATACTGATAAGTTTGTGTTTGATGAGAAGGGTAGTGTGTCTTTGCAAAAAAGTGGAAGTGTGGTTTGGTCTATAGATACTGGTGGCAAAACAGTTACTGCAATGGAATTGCGGGACTCAGGAAATTTGGTTTTGCTTGGTGATGACAATGGAGTAGTTTGGCAGAGTTTTAGTCATCCAACTAATACCCTGTTATGGAACCAGGATTTTCAAGAAGGAATGAAACTTGTGAGCGATCCAAGCTCCAACAACGTGAGCTATATTCTCGAAATCAAGTTTGGTGACATGATTCTTTCTTCAGGTTTCCAAACACCACAGCCTTATTGGTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

209

Amino Acids

23.09

Weight (kDa)

4.57

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	87 - 168	2.1e-16	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	77
AciI	CCGC	1 cut(s)	406
AclWI	GGATC	1 cut(s)	524
AcsI	RAATTY	2 cut(s)	179, 418
AcuI	CTGAAG	1 cut(s)	576
AfiI	CCNNNNNNNGG	1 cut(s)	489
AgsI	TTSAA	3 cut(s)	116, 294, 506
AjnI	CCWGG	3 cut(s)	72, 207, 495
AjuI	GAANNNNNNNTTGG	6 cut(s)	171, 203, 343, 375, 555, 587
AluBI	AGCT	4 cut(s)	122, 176, 537, 552
AluI	AGCT	4 cut(s)	122, 176, 537, 552
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	524
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	179, 418
AsuC2I	CCSGG	2 cut(s)	108, 109
AsuHPI	GGTGA	2 cut(s)	446, 587
AvaI	CYCGRG	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	3 cut(s)	74, 209, 497
BcnI	CCSGG	2 cut(s)	108, 109
BfaI	CTAG	2 cut(s)	78, 230
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	5 cut(s)	74, 108, 109, 209, 497
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	5 cut(s)	74, 108, 109, 209, 497
BpmI	CTGGAG	1 cut(s)	270
BpuMI	CCSGG	2 cut(s)	108, 109
BsaJI	CCNNGG	2 cut(s)	107, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	2 cut(s)	287, 379
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	74, 209, 497
BseDI	CCNNGG	2 cut(s)	107, 207
BseGI	GGATG	2 cut(s)	217, 469
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	186, 426
BseNI	ACTGG	2 cut(s)	287, 379
BseXI	GCAGC	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	90, 422
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmFI	GGGAC	2 cut(s)	90, 422
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	529
BspACI	CCGC	1 cut(s)	406
BspCNI	CTCAG	2 cut(s)	185, 425
BspLI	GGNNCC	1 cut(s)	494
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	2 cut(s)	287, 379
BssECI	CCNNGG	2 cut(s)	107, 207
BssMI	GATC	1 cut(s)	529
Bst2UI	CCWGG	3 cut(s)	74, 209, 497
Bst4CI	ACNGT	1 cut(s)	388
BstDEI	CTNAG	2 cut(s)	172, 412
BstF5I	GGATG	2 cut(s)	217, 469
BstKTI	GATC	1 cut(s)	532
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	1 cut(s)	534
BstNI	CCWGG	3 cut(s)	74, 209, 497
BstSCI	CCNGG	5 cut(s)	72, 106, 107, 207, 495
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	217, 469
BveI	ACCTGC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr9I	CCCGGG	1 cut(s)	107
CseI	GACGC	1 cut(s)	33
CviAII	CATG	2 cut(s)	244, 580
CviJI	RGCY	9 cut(s)	33, 77, 122, 176, 192, 269, 537, 552, 613
CviKI_1	RGCY	9 cut(s)	33, 77, 122, 176, 192, 269, 537, 552, 613
DdeI	CTNAG	2 cut(s)	172, 412
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
Ecl136II	GAGCTC	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	576
Eco88I	CYCGRG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	122
EcoRII	CCWGG	3 cut(s)	72, 207, 495
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	2 cut(s)	247, 583
FaiI	YATR	7 cut(s)	38, 245, 255, 368, 490, 555, 581
FaqI	GGGAC	2 cut(s)	90, 422
FatI	CATG	2 cut(s)	243, 579
FauI	CCCGC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	224, 456
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	78, 230
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	270
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	247, 583
HinfI	GANTC	3 cut(s)	238, 410, 583
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	446, 587
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	3 cut(s)	414, 506, 560
HpyAV	CCTTC	2 cut(s)	316, 503
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	4 cut(s)	257, 272, 340, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	534
HpyF3I	CTNAG	2 cut(s)	172, 412
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	2 cut(s)	247, 583
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	2 cut(s)	119, 542
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	78, 230
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	3 cut(s)	214, 388, 575
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	4 cut(s)	99, 179, 401, 418
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	2 cut(s)	497, 564
MnlI	CCTC	1 cut(s)	124
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	5 cut(s)	74, 108, 109, 209, 497
MvaI	CCWGG	3 cut(s)	74, 209, 497
MwoI	GCNNNNNNNGC	1 cut(s)	534
NciI	CCSGG	2 cut(s)	108, 109
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	2 cut(s)	247, 583
NlaIV	GGNNCC	1 cut(s)	494
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	2 cut(s)	214, 575
PfeI	GAWTC	2 cut(s)	238, 583
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	3 cut(s)	72, 207, 495
PspGI	CCWGG	3 cut(s)	72, 207, 495
PspN4I	GGNNCC	1 cut(s)	494
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	124
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	529
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	5 cut(s)	74, 108, 109, 209, 497
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	8 cut(s)	10, 71, 124, 178, 539, 549, 554, 598
SfcI	CTRYAG	1 cut(s)	366
SmaI	CCCGGG	1 cut(s)	109
Sse9I	AATT	4 cut(s)	99, 179, 401, 418
SsiI	CCGC	1 cut(s)	406
SspMI	CTAG	2 cut(s)	78, 230
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	5 cut(s)	72, 106, 107, 207, 495
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	3 cut(s)	85, 167, 561
TasI	AATT	4 cut(s)	99, 179, 401, 418
TfiI	GAWTC	2 cut(s)	238, 583
TseFI	GTSAC	2 cut(s)	214, 575
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	2 cut(s)	214, 575
TspDTI	ATGAA	5 cut(s)	7, 11, 25, 260, 530
TspMI	CCCGGG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	179, 418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	615
XmaI	CCCGGG	1 cut(s)	107
XspI	CTAG	2 cut(s)	78, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.