Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007302.1

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Reverse (-)

17363 .. 17776

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007302.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgttctccttttgtctgaaacctacctggctagtgttcgatattttgggaaaattagtcccgggtttcaaggagctcggcaggaggattggattgataatgatgggttgttactcagctgaatttggttttggcttctaccctactccccaggatgtcacattgtttctgctagttgtgattcacatgaacacttatgcagtagtctggactgcaaataggggttctccagtttcaaatactgataagtttgtgtttgatgacaagggtagtgtgtctttgcaaaaaagtggaagtgtggtttggtctatagatactggtggcaaaacagttactgcaatggaattgcgggactcaggaaatttggttttgcttggtgatgacaatggagtagtttgtttggcagagttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

137

Amino Acids

15.02

Weight (kDa)

5.22

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	122, 361
AgsI	TTSAA	2 cut(s)	70, 237
AjnI	CCWGG	2 cut(s)	26, 150
AjuI	GAANNNNNNNTTGG	4 cut(s)	114, 146, 286, 318
AluBI	AGCT	2 cut(s)	76, 119
AluI	AGCT	2 cut(s)	76, 119
Alw21I	GWGCWC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	122, 361
AsuC2I	CCSGG	2 cut(s)	62, 63
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	2 cut(s)	28, 152
BcnI	CCSGG	2 cut(s)	62, 63
BfaI	CTAG	2 cut(s)	32, 173
BfmI	CTRYAG	1 cut(s)	309
Bme1390I	CCNGG	4 cut(s)	28, 62, 63, 152
BmeT110I	CYCGRG	1 cut(s)	61
BmrFI	CCNGG	4 cut(s)	28, 62, 63, 152
BpmI	CTGGAG	1 cut(s)	213
BpuMI	CCSGG	2 cut(s)	62, 63
BsaJI	CCNNGG	2 cut(s)	61, 150
Bse1I	ACTGG	2 cut(s)	230, 322
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	28, 152
BseDI	CCNNGG	2 cut(s)	61, 150
BseGI	GGATG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	129, 369
BseNI	ACTGG	2 cut(s)	230, 322
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	44, 365
BsmFI	GGGAC	2 cut(s)	44, 365
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	349
BspCNI	CTCAG	2 cut(s)	128, 368
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	230, 322
BssECI	CCNNGG	2 cut(s)	61, 150
Bst2UI	CCWGG	2 cut(s)	28, 152
Bst4CI	ACNGT	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	115, 355
BstF5I	GGATG	1 cut(s)	160
BstNI	CCWGG	2 cut(s)	28, 152
BstSCI	CCNGG	4 cut(s)	26, 60, 61, 150
BstSFI	CTRYAG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	160
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr9I	CCCGGG	1 cut(s)	61
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	4 cut(s)	31, 76, 119, 135
CviKI_1	RGCY	4 cut(s)	31, 76, 119, 135
DdeI	CTNAG	2 cut(s)	115, 355
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	26, 150
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	1 cut(s)	190
FaiI	YATR	3 cut(s)	188, 198, 311
FaqI	GGGAC	2 cut(s)	44, 365
FatI	CATG	1 cut(s)	186
FauI	CCCGC	1 cut(s)	342
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	32, 173
GsuI	CTGGAG	1 cut(s)	213
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	2 cut(s)	181, 353
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	389
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	208, 357
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	200, 215, 283, 338
HpyF3I	CTNAG	2 cut(s)	115, 355
Hsp92II	CATG	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	32, 173
MaeIII	GTNAC	3 cut(s)	110, 157, 331
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	4 cut(s)	53, 122, 344, 361
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	4 cut(s)	28, 62, 63, 152
MvaI	CCWGG	2 cut(s)	28, 152
NciI	CCSGG	2 cut(s)	62, 63
NlaIII	CATG	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	26, 150
PspGI	CCWGG	2 cut(s)	26, 150
PstNI	CAGNNNCTG	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	4 cut(s)	28, 62, 63, 152
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	4 cut(s)	25, 29, 78, 121
SfcI	CTRYAG	1 cut(s)	309
SmaI	CCCGGG	1 cut(s)	63
Sse9I	AATT	4 cut(s)	53, 122, 344, 361
SsiI	CCGC	1 cut(s)	349
SspMI	CTAG	2 cut(s)	32, 173
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	4 cut(s)	26, 60, 61, 150
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	39
TasI	AATT	4 cut(s)	53, 122, 344, 361
TfiI	GAWTC	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	203
TspMI	CCCGGG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	122, 361
XmaI	CCCGGG	1 cut(s)	61
XspI	CTAG	2 cut(s)	32, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.