Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Forward (+)

757573 .. 761174

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGGAGGTTGGAATCTCATTCATTTGGTAGGCTTCATACTTTTGTCTGTTCTCCTTTTGTCTGAAACCTGGCGGCTAAGTTGGATCGACAATGATGGGTTGTTTCTCTTGTCAAACCAATCCGATTTTGCTTTTGGCTTTGTCACCACTCCTCAAGATGTCACTTTGTTCCTGCTTTGTATTGTCCACATGGACGGCAGGAATATAGTATGGACTGCAAATAGGGGTTCCCCAGTTTCTAATTCTGATAAATTTGTGTTTGATGATAAGGGTAGTTTGTCGTTGCAAAAGGGTGGAAGTGTGGTTTGGTCTATAGGGACTGGTGGCAAAACAGTTACTGCAACGGAGTTGCCTCGGGAAATTTGTCTGCACAAATCCAAATACAATACACCCCCCGGAGTAGTTTGGCAGAGTTTTAGTCATCCAACTGATACTCTATTATGGAACCAGGAGTTTCAGGAAGGAATGAAACTTCAAAGCGAACCAAGCTCCAACAATGTGACCTACATTCTTGAAATAAAGTCCCGCGACTTGATTCTTTCTGCAGGTTTCCAAACACCACAGCCTTATTGGTCCATGGGGAAGGAAAGCCGTAGAACAATCAACACAGATGGTGGGGCAGTCACTTCGGCATCTATCAGTGCAAATTCATGGAAGTTCTATGATAGTTCCAAAGTGCTACTAGGGCAATTCATTTTCTCATCCAATGTTGATGTTAATGCCACATGGATTGCAGTTTTGGGAAATGATGGATTTATTTCTTTTTCCAATCTCCAGAATGGAGGTTCAAGTGGTCCTTCAACGACGAAAATACCAGGGGACCCATGCAGCACCCCCGAACCTTGTAATGCATATTTTGAATGTTTCAGCAACAACAATTGCCTGTGCCCTTCAGGTCTTAGCTCCCATGCGAATTGCAAGTCGGGGATTGTCACCTCATGTTCAAAGGGTTCTACAATGCTTACAACTGCTGGTGATGGGCTCTATTATTTTGCATTGGGATTTGTTTCACCCTCTTCAAGAACTCACTTGGAGGGTTGCAAAAGCTCTTGCCTCGGTAATTGCTCATGTGTTGCTTTGTTCTATCAAAACAGTACAAGAAATTGTTATATGTTTGACAGGATAGGTAGCTTCCAAAAGTCCGACAAGGGCTTTGTTTCTTATGTTAAAGTGTCGAGTGATGGAGGCAGTGGGGGCAGCGGAAGCAAGAAACACTTCCCTTATATTGCTGTTTCGACAGTAGTTGTTATCTGTGGCCTACTCTTTGCAGGATACCGATACTACCAGAGGAAGAGAGATGCCCCACTATCTACTGAAGATACTTCAGAAGAGGATAATTTCTTGGAAAATTTAACTGGTATGCCCATCCGTTTCAGTTACAAGAATCTACATACTGCAACGAATAACTTCTCAAAGAAGCTTGGGCAAGGAGGTTTTGGATCAGTTTATGAAGGAGTTCTTCCCGATGGAACCCGACTGGCTGTGAAGAAGTTGGAAGGGATTGGTCAGGGGCAGAAAGAGTTCCGAGCTGAAGTAACCACCATTGGCAGTATTCATCATTTTCACTTGGTCCGGCTCAAAGGATTCTGTGCGGAAGGAAGCCATCGACTTCTTGCATATGAATACATGGCAAATGGTTCCCTGGATAAATGGATTTTCAAGAAAACAAATGAAGAATGCTTATTGGATTGGGAGAAAAGGTTCAACATAGCAGTGGGTACTGCCAAAGGACTAGCTTATCTCCATGAAGATTGTGATTCAAAGATTATTCACTGTGACATAAAGCCTCAAAACGTGCTCCTCGACAACAATTACCATGCCAAAGTCGCAGATTTCGGTTTGGCAAAGCTAATGACCAAGGAGCAGAGCCATGTTTTCACAACACTTAGAGGAACTCGGGGTTACCTTGCGCCAGAGTGGATCACAAACCGCGCTATTTCAGAGAAGAGTGATGTGTATAGCTATGGAATGCTGTTGCTAGAGATTATCGGTGGGAGAAAGAACTATGACCAATCAGAAAGTTCTGAAAAATCTCAATTTCCATCCTATGCCTTCAAGATGCTAGAAGAAGGCAAAATGAAGGACATTGTCGACTCCAAGCTGAAGATAGATGACTCGGACGAGAGGGTTTCTACCGCGATTATTGTTGCATTGTGGTGTATACAGCAAGACATGTCTCTGAGGCCATCGATGGCCAAGGTTGTCCAAATCTTTGAAGGGGTCTGTCCTGTTCCTCAGCCTCCAACTTCCTCAGCAATGATTTCTTCAACAATGACTTCCTCCGGACCAATGTGCTGCAACAGTGATGCATATTTGTCTGCAGAGCATCTTTCTGGACCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

781

Amino Acids

85.88

Weight (kDa)

6.78

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	69 - 154	7.8e-10	D-mannose binding lectin
PK_Tyr_Ser-Thr	PF07714	470 - 736	4.6e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	471 - 736	1.4e-50	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	536
AccI	GTMKAC	2 cut(s)	2091, 2161
AccII	CGCG	3 cut(s)	528, 1932, 2138
AccIII	TCCGGA	1 cut(s)	2282
AciI	CCGC	6 cut(s)	73, 526, 1200, 1592, 1930, 2136
AclWI	GGATC	3 cut(s)	92, 1447, 1928
AcoI	YGGCCR	1 cut(s)	2193
AcsI	RAATTY	4 cut(s)	251, 360, 646, 1348
AcuI	CTGAAG	5 cut(s)	876, 1308, 1335, 1551, 2123
AfaI	GTAC	2 cut(s)	1096, 1720
AflIII	ACRYGT	1 cut(s)	2172
AjnI	CCWGG	4 cut(s)	68, 447, 814, 1641
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AloI	GAACNNNNNNTCC	2 cut(s)	1685, 1717
Alw21I	GWGCWC	1 cut(s)	1800
Alw26I	GTCTC	1 cut(s)	2181
AlwI	GGATC	3 cut(s)	92, 1447, 1928
AlwNI	CAGNNNCTG	1 cut(s)	338
Ama87I	CYCGRG	2 cut(s)	354, 1896
Aor13HI	TCCGGA	1 cut(s)	2282
AoxI	GGCC	3 cut(s)	1255, 2183, 2193
ApeKI	GCWGC	3 cut(s)	828, 1197, 2295
ApoI	RAATTY	4 cut(s)	251, 360, 646, 1348
ArsI	GACNNNNNNTTYG	4 cut(s)	905, 937, 1136, 1168
Asp700I	GAANNNNTTC	5 cut(s)	1214, 1406, 1455, 1520, 1700
AspLEI	GCGC	2 cut(s)	1912, 1934
AspS9I	GGNCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	4 cut(s)	136, 925, 986, 1002
AvaI	CYCGRG	2 cut(s)	354, 1896
AvaII	GGWCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
BaeGI	GKGCMC	1 cut(s)	890
BalI	TGGCCA	1 cut(s)	2195
BanII	GRGCYC	1 cut(s)	984
Bbv12I	GWGCWC	1 cut(s)	1800
BbvCI	CCTCAGC	2 cut(s)	2235, 2251
BbvI	GCAGC	3 cut(s)	840, 1209, 2282
BceAI	ACGGC	2 cut(s)	211, 576
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	4 cut(s)	70, 449, 816, 1643
BciVI	GTATCC	1 cut(s)	1265
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	2181
BfaI	CTAG	4 cut(s)	683, 1733, 1979, 2063
BfmI	CTRYAG	3 cut(s)	312, 543, 2319
BfuAI	ACCTGC	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	1265
BisI	GCNGC	4 cut(s)	74, 829, 1198, 2296
BlsI	GCNGC	4 cut(s)	75, 830, 1199, 2297
Bme1390I	CCNGG	5 cut(s)	70, 396, 449, 816, 1643
Bme18I	GGWCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
BmeT110I	CYCGRG	2 cut(s)	354, 1896
BmgT120I	GGNCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
BmiI	GGNNCC	6 cut(s)	229, 446, 821, 822, 1471, 1639
BmrFI	CCNGG	5 cut(s)	70, 396, 449, 816, 1643
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	5 cut(s)	641, 1288, 2049, 2296, 2335
BmuI	ACTGGG	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	758
Bpu10I	CCTNAGC	2 cut(s)	2235, 2251
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	2189
BsaJI	CCNNGG	8 cut(s)	353, 394, 576, 815, 1054, 1641, 1857, 2196
BsaWI	WCCGGW	1 cut(s)	2282
BsaXI	ACNNNNNCTCC	2 cut(s)	1685, 1715
Bse1I	ACTGG	4 cut(s)	233, 325, 1360, 1482
Bse3DI	GCAATG	1 cut(s)	2262
BseAI	TCCGGA	1 cut(s)	2282
BseBI	CCWGG	4 cut(s)	70, 449, 816, 1643
BseCI	ATCGAT	1 cut(s)	2189
BseDI	CCNNGG	8 cut(s)	353, 394, 576, 815, 1054, 1641, 1857, 2196
BseGI	GGATG	4 cut(s)	421, 701, 1365, 2042
BseMI	GCAATG	1 cut(s)	2262
BseMII	CTCAG	3 cut(s)	2171, 2249, 2265
BseNI	ACTGG	4 cut(s)	233, 325, 1360, 1482
BseRI	GAGGAG	2 cut(s)	141, 1790
BseSI	GKGCMC	1 cut(s)	890
BseXI	GCAGC	3 cut(s)	840, 1209, 2282
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	3 cut(s)	528, 1932, 2138
BshFI	GGCC	3 cut(s)	1257, 2185, 2195
BshVI	ATCGAT	1 cut(s)	2189
BsiHKAI	GWGCWC	1 cut(s)	1800
BsiHKCI	CYCGRG	2 cut(s)	354, 1896
BsiSI	CCGG	3 cut(s)	396, 1573, 2283
BslFI	GGGAC	3 cut(s)	331, 508, 833
BsmAI	GTCTC	1 cut(s)	2181
BsmFI	GGGAC	3 cut(s)	331, 508, 833
BsmI	GAATGC	2 cut(s)	1682, 1974
BsnI	GGCC	3 cut(s)	1257, 2185, 2195
BsoBI	CYCGRG	2 cut(s)	354, 1896
Bsp1286I	GDGCHC	3 cut(s)	890, 984, 1800
Bsp13I	TCCGGA	1 cut(s)	2282
Bsp143I	GATC	3 cut(s)	84, 1439, 1920
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	6 cut(s)	73, 526, 1200, 1592, 1930, 2136
BspANI	GGCC	3 cut(s)	1257, 2185, 2195
BspCNI	CTCAG	3 cut(s)	2172, 2248, 2264
BspDI	ATCGAT	1 cut(s)	2189
BspEI	TCCGGA	1 cut(s)	2282
BspFNI	CGCG	3 cut(s)	528, 1932, 2138
BspLI	GGNNCC	6 cut(s)	229, 446, 821, 822, 1471, 1639
BspMAI	CTGCAG	2 cut(s)	547, 2323
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	3 cut(s)	92, 1447, 1928
BsrDI	GCAATG	1 cut(s)	2262
BsrI	ACTGG	4 cut(s)	233, 325, 1360, 1482
BssECI	CCNNGG	8 cut(s)	353, 394, 576, 815, 1054, 1641, 1857, 2196
BssMI	GATC	3 cut(s)	84, 1439, 1920
BssNAI	GTATAC	1 cut(s)	2162
BssT1I	CCWWGG	3 cut(s)	576, 1857, 2196
Bst1107I	GTATAC	1 cut(s)	2162
Bst2UI	CCWGG	4 cut(s)	70, 449, 816, 1643
Bst4CI	ACNGT	5 cut(s)	334, 1094, 1240, 1775, 2303
Bst6I	CTCTTC	4 cut(s)	1021, 1286, 1323, 1940
BstDEI	CTNAG	6 cut(s)	77, 899, 1886, 2180, 2235, 2251
BstDSI	CCRYGG	1 cut(s)	576
BstEII	GGTNACC	1 cut(s)	1901
BstF5I	GGATG	4 cut(s)	421, 701, 1365, 2042
BstFNI	CGCG	3 cut(s)	528, 1932, 2138
BstHHI	GCGC	2 cut(s)	1912, 1934
BstKTI	GATC	3 cut(s)	87, 1442, 1923
BstMAI	GTCTC	1 cut(s)	2181
BstMBI	GATC	3 cut(s)	84, 1439, 1920
BstMWI	GCNNNNNNNGC	5 cut(s)	486, 685, 1194, 1203, 1826
BstNI	CCWGG	4 cut(s)	70, 449, 816, 1643
BstNSI	RCATGY	1 cut(s)	2176
BstPI	GGTNACC	1 cut(s)	1901
BstSCI	CCNGG	5 cut(s)	68, 394, 447, 814, 1641
BstSFI	CTRYAG	3 cut(s)	312, 543, 2319
BstSLI	GKGCMC	1 cut(s)	890
BstUI	CGCG	3 cut(s)	528, 1932, 2138
BstV1I	GCAGC	3 cut(s)	840, 1209, 2282
BstZ17I	GTATAC	1 cut(s)	2162
Bsu15I	ATCGAT	1 cut(s)	2189
BsuI	GTATCC	1 cut(s)	1265
BsuRI	GGCC	3 cut(s)	1257, 2185, 2195
BsuTUI	ATCGAT	1 cut(s)	2189
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	4 cut(s)	421, 701, 1365, 2042
BtsI	GCAGTG	2 cut(s)	1195, 1719
BtsIMutI	CAGTG	5 cut(s)	646, 1195, 1719, 1771, 2308
BveI	ACCTGC	1 cut(s)	536
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	2 cut(s)	1912, 1934
Cfr13I	GGNCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
ClaI	ATCGAT	1 cut(s)	2189
Csp6I	GTAC	2 cut(s)	1095, 1719
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviQI	GTAC	2 cut(s)	1095, 1719
DdeI	CTNAG	6 cut(s)	77, 899, 1886, 2180, 2235, 2251
DpnI	GATC	3 cut(s)	86, 1441, 1922
DpnII	GATC	3 cut(s)	84, 1439, 1920
EaeI	YGGCCR	1 cut(s)	2193
Eam1104I	CTCTTC	4 cut(s)	1021, 1286, 1323, 1940
EarI	CTCTTC	4 cut(s)	1021, 1286, 1323, 1940
Eco130I	CCWWGG	3 cut(s)	576, 1857, 2196
Eco24I	GRGCYC	1 cut(s)	984
Eco47I	GGWCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
Eco57I	CTGAAG	5 cut(s)	876, 1308, 1335, 1551, 2123
Eco88I	CYCGRG	2 cut(s)	354, 1896
Eco91I	GGTNACC	1 cut(s)	1901
EcoO109I	RGGNCCY	1 cut(s)	820
EcoO65I	GGTNACC	1 cut(s)	1901
EcoRII	CCWGG	4 cut(s)	68, 447, 814, 1641
EcoT14I	CCWWGG	3 cut(s)	576, 1857, 2196
EcoT22I	ATGCAT	2 cut(s)	853, 2311
EcoT38I	GRGCYC	1 cut(s)	984
ErhI	CCWWGG	3 cut(s)	576, 1857, 2196
FalI	AAGNNNNNCTT	6 cut(s)	781, 813, 1199, 1231, 1443, 1475
FaqI	GGGAC	3 cut(s)	331, 508, 833
FauI	CCCGC	1 cut(s)	533
FauNDI	CATATG	1 cut(s)	1618
FblI	GTMKAC	2 cut(s)	2091, 2161
Fnu4HI	GCNGC	4 cut(s)	74, 829, 1198, 2296
FokI	GGATG	4 cut(s)	408, 688, 1352, 2029
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	4 cut(s)	74, 829, 1198, 2296
FspBI	CTAG	4 cut(s)	683, 1733, 1979, 2063
GlaI	GCGC	2 cut(s)	1911, 1933
GluI	GCNGC	4 cut(s)	74, 829, 1198, 2296
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	3 cut(s)	1257, 2185, 2195
HapII	CCGG	3 cut(s)	396, 1573, 2283
HhaI	GCGC	2 cut(s)	1912, 1934
Hin6I	GCGC	2 cut(s)	1910, 1932
HinP1I	GCGC	2 cut(s)	1910, 1932
HincII	GTYRAC	1 cut(s)	2092
HindII	GTYRAC	1 cut(s)	2092
HindIII	AAGCTT	1 cut(s)	1418
HinfI	GANTC	7 cut(s)	13, 535, 1384, 1584, 1757, 2093, 2114
HpaII	CCGG	3 cut(s)	396, 1573, 2283
HphI	GGTGA	4 cut(s)	136, 925, 986, 1002
Hpy166II	GTNNAC	3 cut(s)	187, 2092, 2162
Hpy8I	GTNNAC	3 cut(s)	187, 2092, 2162
Hpy99I	CGWCG	1 cut(s)	808
HpyCH4III	ACNGT	5 cut(s)	334, 1094, 1240, 1775, 2303
HpyCH4IV	ACGT	1 cut(s)	1794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	486, 685, 1194, 1203, 1826
HpyF3I	CTNAG	6 cut(s)	77, 899, 1886, 2180, 2235, 2251
HpySE526I	ACGT	1 cut(s)	1794
HspAI	GCGC	2 cut(s)	1910, 1932
KflI	GGGWCCC	1 cut(s)	820
Kpn2I	TCCGGA	1 cut(s)	2282
Kzo9I	GATC	3 cut(s)	84, 1439, 1920
LmnI	GCTCC	4 cut(s)	494, 908, 1803, 1861
Lsp1109I	GCAGC	3 cut(s)	840, 1209, 2282
LweI	GCATC	5 cut(s)	641, 1288, 2049, 2296, 2335
MaeI	CTAG	4 cut(s)	683, 1733, 1979, 2063
MaeII	ACGT	1 cut(s)	1794
MalI	GATC	3 cut(s)	86, 1441, 1922
MboI	GATC	3 cut(s)	84, 1439, 1920
MfeI	CAATTG	1 cut(s)	877
MhlI	GDGCHC	3 cut(s)	890, 984, 1800
MlsI	TGGCCA	1 cut(s)	2195
MluNI	TGGCCA	1 cut(s)	2195
MlyI	GAGTC	2 cut(s)	2087, 2108
MmeI	TCCRAC	6 cut(s)	62, 449, 516, 1167, 1473, 2267
Mox20I	TGGCCA	1 cut(s)	2195
Mph1103I	ATGCAT	2 cut(s)	853, 2311
MroI	TCCGGA	1 cut(s)	2282
MroXI	GAANNNNTTC	5 cut(s)	1214, 1406, 1455, 1520, 1700
MscI	TGGCCA	1 cut(s)	2195
MseI	TTAA	3 cut(s)	717, 1167, 1352
MslI	CAYNNNNRTG	2 cut(s)	1712, 2155
Msp20I	TGGCCA	1 cut(s)	2195
MspA1I	CMGCKG	1 cut(s)	1200
MspI	CCGG	3 cut(s)	396, 1573, 2283
MspR9I	CCNGG	5 cut(s)	70, 396, 449, 816, 1643
MunI	CAATTG	1 cut(s)	877
Mva1269I	GAATGC	2 cut(s)	1682, 1974
MvaI	CCWGG	4 cut(s)	70, 449, 816, 1643
MvnI	CGCG	3 cut(s)	528, 1932, 2138
MwoI	GCNNNNNNNGC	5 cut(s)	486, 685, 1194, 1203, 1826
NciI	CCSGG	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	1 cut(s)	1618
NdeII	GATC	3 cut(s)	84, 1439, 1920
NlaIV	GGNNCC	6 cut(s)	229, 446, 821, 822, 1471, 1639
NmuCI	GTSAC	6 cut(s)	142, 160, 499, 622, 931, 1775
NsiI	ATGCAT	2 cut(s)	853, 2311
NspI	RCATGY	1 cut(s)	2176
PciI	ACATGT	1 cut(s)	2172
PcsI	WCGNNNNNNNCGW	1 cut(s)	1800
PctI	GAATGC	2 cut(s)	1682, 1974
PdmI	GAANNNNTTC	5 cut(s)	1214, 1406, 1455, 1520, 1700
PfeI	GAWTC	5 cut(s)	13, 535, 1384, 1584, 1757
PflFI	GACNNNGTC	1 cut(s)	2087
PkrI	GCNGC	4 cut(s)	75, 830, 1199, 2297
PleI	GAGTC	2 cut(s)	2087, 2108
PpsI	GAGTC	2 cut(s)	2087, 2108
PpuMI	RGGWCCY	1 cut(s)	820
PscI	ACATGT	1 cut(s)	2172
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	4 cut(s)	68, 447, 814, 1641
PspEI	GGTNACC	1 cut(s)	1901
PspGI	CCWGG	4 cut(s)	68, 447, 814, 1641
PspN4I	GGNNCC	6 cut(s)	229, 446, 821, 822, 1471, 1639
PspPI	GGNCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
PspPPI	RGGWCCY	1 cut(s)	820
PstI	CTGCAG	2 cut(s)	547, 2323
PstNI	CAGNNNCTG	1 cut(s)	338
PsyI	GACNNNGTC	1 cut(s)	2087
RsaI	GTAC	2 cut(s)	1096, 1720
RsaNI	GTAC	2 cut(s)	1095, 1719
RseI	CAYNNNNRTG	2 cut(s)	1712, 2155
SalI	GTCGAC	1 cut(s)	2090
SaqAI	TTAA	3 cut(s)	717, 1167, 1352
SatI	GCNGC	4 cut(s)	74, 829, 1198, 2296
Sau3AI	GATC	3 cut(s)	84, 1439, 1920
Sau96I	GGNCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
SchI	GAGTC	2 cut(s)	2087, 2108
ScrFI	CCNGG	5 cut(s)	70, 396, 449, 816, 1643
SduI	GDGCHC	3 cut(s)	890, 984, 1800
SfaNI	GCATC	5 cut(s)	641, 1288, 2049, 2296, 2335
SfcI	CTRYAG	3 cut(s)	312, 543, 2319
SinI	GGWCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
SmiMI	CAYNNNNRTG	2 cut(s)	1712, 2155
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SsiI	CCGC	6 cut(s)	73, 526, 1200, 1592, 1930, 2136
SspMI	CTAG	4 cut(s)	683, 1733, 1979, 2063
StyD4I	CCNGG	5 cut(s)	68, 394, 447, 814, 1641
StyI	CCWWGG	3 cut(s)	576, 1857, 2196
TaaI	ACNGT	5 cut(s)	334, 1094, 1240, 1775, 2303
TaiI	ACGT	1 cut(s)	1797
TaqI	TCGA	7 cut(s)	87, 1175, 1235, 1606, 1803, 2091, 2189
TatI	WGTACW	1 cut(s)	1094
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	5 cut(s)	13, 535, 1384, 1584, 1757
Tru1I	TTAA	3 cut(s)	717, 1167, 1352
Tru9I	TTAA	3 cut(s)	717, 1167, 1352
TscAI	CASTG	5 cut(s)	646, 1195, 1719, 1778, 2308
TseFI	GTSAC	6 cut(s)	142, 160, 499, 622, 931, 1775
TseI	GCWGC	3 cut(s)	828, 1197, 2295
Tsp45I	GTSAC	6 cut(s)	142, 160, 499, 622, 931, 1775
TspGWI	ACGGA	2 cut(s)	359, 1358
TspRI	CASTG	5 cut(s)	646, 1195, 1719, 1778, 2308
Tth111I	GACNNNGTC	1 cut(s)	2087
VpaK11BI	GGWCC	6 cut(s)	573, 794, 820, 1570, 2285, 2336
XapI	RAATTY	4 cut(s)	251, 360, 646, 1348
XceI	RCATGY	1 cut(s)	2176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XmiI	GTMKAC	2 cut(s)	2091, 2161
XmnI	GAANNNNTTC	5 cut(s)	1214, 1406, 1455, 1520, 1700
XspI	CTAG	4 cut(s)	683, 1733, 1979, 2063
Zsp2I	ATGCAT	2 cut(s)	853, 2311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.