Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Reverse (-)

978643 .. 979740

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATGGGTTGTTTCTCGTCTAATCAATCCGATTTTGCTTTTGGCTTTGTCACCACTCCTCAAGATGTCACTTTGTTCCTGCTTTGTATTGTCCACGTGGACAGCAGGAATATAGTATGGACTGCAAATAGGGGTTCCCCAGTTTCTAATTCTGATAAATTTGTGTTTGATGGTAAGGGTAGTGTGTCGTTGCAAAAGGGTGGAAGTGTGGTTTGGTCTATAGATACTGGTGGCAAAACAGTTACTGCAACGGAATTGCGGGACTCGGGAAATTTGGTTTTGCTTGGGGATGACAATGGAGTAGTTTGGCAGAGTTTTAGTCATCCAACTGATACTCTATTATGGAACCAGGAGTTTCAGGAAGGAATGAAACTTCAAAGCGAACCAAGCTCCAACAATGTGACCTACATTCTTGAAATCAAGTCCGGCGACTTGATTCTTTCTGCAGGTTTCCAAACACCACAGCCTTATTGGTCCATGGGGAAGGAAAGCCGTAAAACAATCAACACAGATGGTGGGGCAGTCACTTCGGCATCTATCAGTGCAAATTCATGGAAGTTCTATGATAGTTCCAAACTGAGACTATGGCAATTCATTTTCTCATCCAATGTTGATGTTAATTCCACATGGATTGCAGTTTTGGGAAATGATGGATTTATTTCTTTTTCCAATCTTCAGAATGGAGGTTCAAATGGTCCTTCAACAACGAAAATACCAGGGGACTCATGCAGCACCCCCAAACCTTGTGATGCATATTTTGAATGTTTCAGCAACAACAAGTGCCAGTGCCCTTCGGGTCTTAGCTCCCATGCGAAATGCAAGTCGGGGATTGTCACCTCATGTTCGAAGTGTTCTACAATGCTTGGTGATGGGCTCTATTATTTTGCATTGGGATTTGTTTCACCCTCTTCAAGAACTGACTTGGAGGGTTGCAAAAGCTCTTGCCTTGGTAATTGTTCATGTGTTGCTTTGTTCTATCAAAACAGTGTGAGAACATGTTTTATTCAAGTGCCAATGTCCTTATTTAATTTTGCACATCAATACTCCATTAAATATCCAGAGGAAATAAGTCAGATGTGGAATGCTTTCATGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

365

Amino Acids

39.73

Weight (kDa)

5.59

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	38 - 121	5.2e-16	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	437
AciI	CCGC	1 cut(s)	259
AcsI	RAATTY	3 cut(s)	158, 271, 547
AcuI	CTGAAG	1 cut(s)	659
AcvI	CACGTG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	995
AgsI	TTSAA	7 cut(s)	377, 416, 690, 702, 761, 912, 1007
AjnI	CCWGG	2 cut(s)	348, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
AluBI	AGCT	3 cut(s)	390, 804, 939
AluI	AGCT	3 cut(s)	390, 804, 939
Alw26I	GTCTC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	729
ApoI	RAATTY	3 cut(s)	158, 271, 547
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp700I	GAANNNNTTC	1 cut(s)	1085
AspS9I	GGNCC	2 cut(s)	474, 695
AsuHPI	GGTGA	4 cut(s)	43, 826, 878, 894
AsuII	TTCGAA	1 cut(s)	845
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	474, 695
BaeGI	GKGCMC	1 cut(s)	791
BanII	GRGCYC	1 cut(s)	876
BbrPI	CACGTG	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	4 cut(s)	164, 506, 644, 863
BceAI	ACGGC	1 cut(s)	477
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BciT130I	CCWGG	2 cut(s)	350, 717
BcoDI	GTCTC	1 cut(s)	574
BfmI	CTRYAG	2 cut(s)	219, 444
BfuAI	ACCTGC	1 cut(s)	437
BisI	GCNGC	1 cut(s)	730
BlsI	GCNGC	1 cut(s)	731
Bme1390I	CCNGG	2 cut(s)	350, 717
Bme18I	GGWCC	2 cut(s)	474, 695
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	474, 695
BmiI	GGNNCC	2 cut(s)	136, 347
BmrFI	CCNGG	2 cut(s)	350, 717
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	542, 739
BmuI	ACTGGG	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	845
BpuEI	CTTGAG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	477, 716, 946
Bse1I	ACTGG	3 cut(s)	140, 232, 784
BseBI	CCWGG	2 cut(s)	350, 717
BseDI	CCNNGG	3 cut(s)	477, 716, 946
BseGI	GGATG	3 cut(s)	295, 322, 602
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	3 cut(s)	140, 232, 784
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	791
BseXI	GCAGC	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	275, 734
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	2 cut(s)	275, 734
BsmI	GAATGC	1 cut(s)	1087
BsoBI	CYCGRG	1 cut(s)	265
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	2 cut(s)	791, 876
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	136, 347
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	845
BsrI	ACTGG	3 cut(s)	140, 232, 784
BssECI	CCNNGG	3 cut(s)	477, 716, 946
BssT1I	CCWWGG	2 cut(s)	477, 946
Bst2UI	CCWGG	2 cut(s)	350, 717
Bst4CI	ACNGT	2 cut(s)	241, 986
Bst6I	CTCTTC	1 cut(s)	913
BstBAI	YACGTR	1 cut(s)	97
BstBI	TTCGAA	1 cut(s)	845
BstDEI	CTNAG	2 cut(s)	578, 800
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	295, 322, 602
BstMAI	GTCTC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	2 cut(s)	350, 717
BstNSI	RCATGY	1 cut(s)	999
BstSCI	CCNGG	2 cut(s)	348, 715
BstSFI	CTRYAG	2 cut(s)	219, 444
BstSLI	GKGCMC	1 cut(s)	791
BstV1I	GCAGC	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	295, 322, 602
BtsIMutI	CAGTG	3 cut(s)	547, 791, 991
BveI	ACCTGC	1 cut(s)	437
CaiI	CAGNNNCTG	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	474, 695
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	9 cut(s)	478, 552, 627, 726, 809, 840, 960, 996, 1090
CviJI	RGCY	7 cut(s)	45, 390, 466, 492, 804, 874, 939
CviKI_1	RGCY	7 cut(s)	45, 390, 466, 492, 804, 874, 939
DdeI	CTNAG	2 cut(s)	578, 800
Eam1104I	CTCTTC	1 cut(s)	913
EarI	CTCTTC	1 cut(s)	913
Eco130I	CCWWGG	2 cut(s)	477, 946
Eco24I	GRGCYC	1 cut(s)	876
Eco47I	GGWCC	2 cut(s)	474, 695
Eco57I	CTGAAG	1 cut(s)	659
Eco72I	CACGTG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	348, 715
EcoT14I	CCWWGG	2 cut(s)	477, 946
EcoT22I	ATGCAT	1 cut(s)	754
EcoT38I	GRGCYC	1 cut(s)	876
ErhI	CCWWGG	2 cut(s)	477, 946
FaeI	CATG	9 cut(s)	481, 555, 630, 729, 812, 843, 963, 999, 1093
FaqI	GGGAC	2 cut(s)	275, 734
FatI	CATG	9 cut(s)	477, 551, 626, 725, 808, 839, 959, 995, 1089
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	730
FokI	GGATG	3 cut(s)	302, 309, 589
FriOI	GRGCYC	1 cut(s)	876
Fsp4HI	GCNGC	1 cut(s)	730
GluI	GCNGC	1 cut(s)	730
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	9 cut(s)	481, 555, 630, 729, 812, 843, 963, 999, 1093
HinfI	GANTC	3 cut(s)	263, 436, 722
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	4 cut(s)	43, 826, 878, 894
Hpy166II	GTNNAC	2 cut(s)	94, 100
Hpy188I	TCNGA	4 cut(s)	31, 154, 678, 1074
Hpy188III	TCNNGA	6 cut(s)	62, 267, 359, 413, 912, 1058
Hpy8I	GTNNAC	2 cut(s)	94, 100
HpyAV	CCTTC	4 cut(s)	356, 478, 708, 801
HpyCH4III	ACNGT	2 cut(s)	241, 986
HpyCH4IV	ACGT	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	2 cut(s)	578, 800
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	9 cut(s)	481, 555, 630, 729, 812, 843, 963, 999, 1093
LmnI	GCTCC	2 cut(s)	395, 809
Lsp1109I	GCAGC	1 cut(s)	741
LweI	GCATC	2 cut(s)	542, 739
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	6 cut(s)	49, 67, 241, 400, 523, 832
MboII	GAAGA	2 cut(s)	665, 900
MhlI	GDGCHC	2 cut(s)	791, 876
MluCI	AATT	9 cut(s)	148, 158, 254, 271, 547, 590, 619, 952, 1027
MlyI	GAGTC	2 cut(s)	257, 716
MmeI	TCCRAC	2 cut(s)	350, 417
MnlI	CCTC	6 cut(s)	69, 677, 847, 916, 919, 1054
Mph1103I	ATGCAT	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	1085
MseI	TTAA	3 cut(s)	618, 1026, 1050
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	350, 717
Mva1269I	GAATGC	1 cut(s)	1087
MvaI	CCWGG	2 cut(s)	350, 717
MwoI	GCNNNNNNNGC	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	477
NlaIII	CATG	9 cut(s)	481, 555, 630, 729, 812, 843, 963, 999, 1093
NlaIV	GGNNCC	2 cut(s)	136, 347
NmuCI	GTSAC	5 cut(s)	49, 67, 400, 523, 832
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	1 cut(s)	999
NspV	TTCGAA	1 cut(s)	845
PciI	ACATGT	1 cut(s)	995
PctI	GAATGC	1 cut(s)	1087
PdmI	GAANNNNTTC	1 cut(s)	1085
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	731
PleI	GAGTC	2 cut(s)	257, 716
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	2 cut(s)	257, 716
Ppu21I	YACGTR	1 cut(s)	97
PscI	ACATGT	1 cut(s)	995
Psp6I	CCWGG	2 cut(s)	348, 715
PspCI	CACGTG	1 cut(s)	97
PspGI	CCWGG	2 cut(s)	348, 715
PspN4I	GGNNCC	2 cut(s)	136, 347
PspPI	GGNCC	2 cut(s)	474, 695
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	618, 1026, 1050
SatI	GCNGC	1 cut(s)	730
Sau96I	GGNCC	2 cut(s)	474, 695
SchI	GAGTC	2 cut(s)	257, 716
ScrFI	CCNGG	2 cut(s)	350, 717
SduI	GDGCHC	2 cut(s)	791, 876
SetI	ASST	9 cut(s)	99, 392, 407, 451, 688, 745, 806, 839, 941
SfaNI	GCATC	2 cut(s)	542, 739
SfcI	CTRYAG	2 cut(s)	219, 444
SfuI	TTCGAA	1 cut(s)	845
SinI	GGWCC	2 cut(s)	474, 695
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	9 cut(s)	148, 158, 254, 271, 547, 590, 619, 952, 1027
SsiI	CCGC	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	348, 715
StyI	CCWWGG	2 cut(s)	477, 946
TaaI	ACNGT	2 cut(s)	241, 986
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	845
TasI	AATT	9 cut(s)	148, 158, 254, 271, 547, 590, 619, 952, 1027
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	3 cut(s)	618, 1026, 1050
Tru9I	TTAA	3 cut(s)	618, 1026, 1050
TscAI	CASTG	3 cut(s)	547, 791, 991
TseFI	GTSAC	5 cut(s)	49, 67, 400, 523, 832
TseI	GCWGC	1 cut(s)	729
Tsp45I	GTSAC	5 cut(s)	49, 67, 400, 523, 832
TspDTI	ATGAA	5 cut(s)	383, 540, 583, 948, 1078
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	3 cut(s)	547, 791, 991
VpaK11BI	GGWCC	2 cut(s)	474, 695
XapI	RAATTY	3 cut(s)	158, 271, 547
XceI	RCATGY	1 cut(s)	999
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	1085
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.