Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Forward (+)

58829560 .. 58829871

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG401700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGTTGTTACTCAGCTGAATTTGGTTTTGGCTTCTACCCTACTCCCCAGGATGTCACATTGTTTCTGCTAGTTGTGATTCACATGAACACTTATGCAGTTGTCTGGGCTGCAAATAGGGGTTCTCCAGTTTCAAATACTGATAAGTTTGTGTTTGATGACAAGGGTAGTGTGTCTTTGCAAAAAAGTGGAAGTGTGGTTTGGTCTATAGATACTGGTGGCAAAACAGTTACTGCAATGGAATTGCGGGACTCAGGAAATTTGGTTTTGCTTGGTGATGACAATGGAGTAGTTAGTTTGGCAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

103

Amino Acids

11.06

Weight (kDa)

4.43

Isoelectric Point (pI)

23.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	34 - 94	3.6e-09	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	20, 259
AgsI	TTSAA	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	48
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 184, 216
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	20, 259
AsuHPI	GGTGA	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	128, 220
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	27, 267
BseNI	ACTGG	2 cut(s)	128, 220
BseXI	GCAGC	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	263
BspACI	CCGC	1 cut(s)	247
BspCNI	CTCAG	2 cut(s)	26, 266
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	128, 220
BssECI	CCNNGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	13, 253
BstF5I	GGATG	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	58
CaiI	CAGNNNCTG	1 cut(s)	233
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	3 cut(s)	17, 33, 110
CviKI_1	RGCY	3 cut(s)	17, 33, 110
DdeI	CTNAG	2 cut(s)	13, 253
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	86, 96, 209
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	111
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	2 cut(s)	79, 251
HphI	GGTGA	1 cut(s)	287
Hpy188III	TCNNGA	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	98, 113, 181, 236
HpyF3I	CTNAG	2 cut(s)	13, 253
Hsp92II	CATG	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	35, 62, 91, 141, 201, 240
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	3 cut(s)	8, 55, 229
MluCI	AATT	3 cut(s)	20, 242, 259
MlyI	GAGTC	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
NlaIII	CATG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	17
SatI	GCNGC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	207
Sse9I	AATT	3 cut(s)	20, 242, 259
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	229
TasI	AATT	3 cut(s)	20, 242, 259
TfiI	GAWTC	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	101
XapI	RAATTY	2 cut(s)	20, 259
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.