Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Forward (+)

31995062 .. 32003236

Gene Structure 8175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0303100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGATTACCTCACAGCTAAGAGGAAGAGGAAGCAAACCCATACCCATCACCAAAATCGCCAAAGTCTTCCTCCAAAACCCACACAAACTCACTCCCATATCACCACCAATCCAATCCCACCAGAACCCATGTGCCCCACTCTCCCATACCCAAAACCCTTTATGGGTTTTACAGAGCTGTGACCACTCAACGCAGTCCTCTAAGTTTCCCGAGTATGAAATGCCCTCAGTCACTTGGGGTGTGGTCCAAGGCCGCAAGGAGAGGCTTGTCTCTAGAGTCATAATATGTGACTATTTGAAGAGTATAGGCATAGTTCCTGATGAATTGGAAAACTTGGAGCTACCCTCTACTGTTGAAGTCATGAGGGAAAGAGTTGAGTTCCTACAGAAGCTAGGATTGTCGATTGACGACATTAACGAGTACCCTTTGATGCTCGGATGCAGTGTCAGGAAAAACATGATACCCGTGTTGGCTTACTTGGAGAAAATTGGGATTCAAAGGTCGAAGCTAGGTGAATTTGTTAAGAATTACCCACAAGTTTTACATGCTAGTGTGGTAGTTGAGCTTGTTCCGGTGATCAAGTTCCTTCGTGGGCTTGATGTGGAGAAGCTGGATATTGGCTATGTCTTGCAGAAGTATCCAGAGCTTCTCGGATATAAGCTTGAGGGGACTATGAGTACTTCTGTTGCGTATCTTGTTAGTATTGGTGTTACTCCTAGGGATATAGGTCCCATGGTCACCCAGTATCCTTACCTATTGGGCATGAGAGTTGGGACTGTGATTAAGCCTTTTGTTGATTATTTGGTATCCTTAGGTTTGCCGAAAAAGATTTTGGCTAGGATGTTGGAGAAGCGCGCATATTTACTTGGTTATGATCTTGAGGAGACTATTAAACCTAATGTGGATTGTTTGGTTGCTTTTGGGATCAGGAGGGAAGCACTTGCTTCTATTGTTGCTCAATACCCCCAAATTCTTGGGCAGCCTTTGAAAGCTAAAATGTCTTCACAGCAGTTTTTCTTCAGTATGAAGCTTAAAATTGATCCTGAAGGGTTTGCACGGGTGATAGAGAAGATGCCGCAGATAGTCAGCCTTCATCAACATGTGATAATGAAGCCTGTTGAGTTCCTTCTTGGACGGGGGATACCTTCAGAAGATGTAGCTAAGATGGTCGTAAAGTGTCCCCAATTAGTGGCACTGCGTGTTGAGCTCATGAAGAACAGTTATTACTTTTTTAAGAGTGAAATGGGGAGACCAGTGAAAGAGCTTGTGGAATTTCCGGAATACTTTACATATAGTTTAGAATCCAGGATCAAACCTAGATACCAGAGGTTGCAAAGCAAGGGGATTAGGTGTTCTTTGAAATGGTTCCTCAACTGTAGCGATCAGAGATTTGAGGAGAGGTTGCAAGGGGAGTACATTGAAACAGAGATTTCTGGTCCATCATTTTGTATGGGAGGGAAGTTAGAGCTACCTGGGGTTGGAAATGAGATGGTGTCAGATGGGGAAGACGAGAGTGATGATGAAATACTTTACAGACGCACTGAAGCAGAAGACAATAGGGATCTTCGTGTTGAAGCAAGGGAATCAGCAGCAGTTCATGAGGTTGCGATGCTTTTGCCTCTTTCCGAACTCCTTCAGTGTATAGCTTCCATCAAGGCCAATTACAGTAGTTGCTTGCAGGGGATCGTGGAGATGACCCCAAAAGGTGACAAGGGCAAAGAAGGAGACTCGTCCTTTGCCAAAAAGAAGTCCAGAAGACCCAAATATTCCAGGTTCTCACAGCAAGAGCTTCCAGCTTGCAAACCAATTTTGTCACCAGGATGGGTGGTTTCAATATTCATCACCATTGGCATTGTCTTTATCCCAATTGGCTTTGCTGCCTTATTCGCCTCAGAGCGTGTTGTGGAACTGCAATTCCAGTATGACCAAGATTGTGTTCCTGCAAAGTATAAGGATAATGCGGTTGCATATATTCAAAGCAATGGCACTGACAAGACCTGCACGAGGAAAATGCCTGCTGTTACAAGTAAAATGAAATCTCCCATTTATGTCTACTATCAGATTGATCACTACTTTCAGAATCATCGCCGATATGTTAAAAGTAGAAGTGACGATCAGTTGCGGAGTGTGGCAAACGAAAATAGCACAAGCGACTGTGCACCTGAACGCTTTGCGAAAAATGGTCAACCAATTGTTCCTTGTGGCCTCGTTGCATGGAGTTTGTTTAATGACACATATAAGTTTTCAGTGAAAAACAAAACAATAGCGGTCAGCAAAAAGGACATCACATGGAAAAGTGACCGTGAGAAAAAGTTTTCAAGCAGTGTCTATCCTAAGAACTTTCAGTCTGGGGGTTTGATTGGAGGAGCAAAGCTCAATTCTAGCATACCTCTGAGCCAACAAGAGGATCTTATTGTTTGGATGCGAACTGCAGCAATGCCATCTTTTAGAAAACTGTATGGGAGGATAGAAGTGGACCTTGAGGCTCATGATGAAATAACAATAGAACTACAGAATAACTATAATACCTACAGCTTTAAAGGCAGCAAGTCAGTGATACTTTCTACTGCGAGTTGGATTGGTGGAAAGAATGATCTAATGGGCATAGCATACCTTACTATTGGTGGAATGTGTTTGTTCTTGGCAATATGCTTCATACTTATGTATGTGCTCAAGCCGAGACCTCTTGGGGATACCTCCTACTTGTCTTGGAATAGAAATGCATCAGGAGGAGGCCTAAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

915

Amino Acids

103.34

Weight (kDa)

8.94

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	157 - 465	4.1e-112	mTERF
CDC50	PF03381	628 - 894	2.4e-84	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2006
AccB7I	CCANNNNNTGG	1 cut(s)	1189
AccI	GTMKAC	1 cut(s)	2052
AccII	CGCG	1 cut(s)	855
AccIII	TCCGGA	1 cut(s)	1276
AciI	CCGC	5 cut(s)	253, 1076, 1961, 2122, 2267
AclWI	GGATC	6 cut(s)	932, 1034, 1316, 1569, 1691, 2415
AcsI	RAATTY	4 cut(s)	515, 969, 1271, 2740
AcuI	CTGAAG	5 cut(s)	1003, 1065, 1131, 1563, 1619
AdeI	CACNNNGTG	1 cut(s)	1199
AfaI	GTAC	3 cut(s)	422, 679, 1415
AfiI	CCNNNNNNNGG	5 cut(s)	163, 1189, 1478, 2004, 2404
AflIII	ACRYGT	1 cut(s)	1099
AjnI	CCWGG	4 cut(s)	1304, 1471, 1769, 1816
AjuI	GAANNNNNNNTTGG	4 cut(s)	815, 847, 1920, 1952
AloI	GAACNNNNNNTCC	4 cut(s)	1336, 1368, 1899, 1931
Alw21I	GWGCWC	3 cut(s)	1209, 2161, 2673
Alw26I	GTCTC	5 cut(s)	274, 878, 1243, 1719, 2674
Alw44I	GTGCAC	1 cut(s)	2157
AlwI	GGATC	6 cut(s)	932, 1034, 1316, 1569, 1691, 2415
Ama87I	CYCGRG	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	1276
AoxI	GGCC	4 cut(s)	250, 1656, 2203, 2734
ApaLI	GTGCAC	1 cut(s)	2157
ApeKI	GCWGC	5 cut(s)	979, 1589, 1877, 2432, 2544
ApoI	RAATTY	4 cut(s)	515, 969, 1271, 2740
ArsI	GACNNNNNNTTYG	2 cut(s)	1718, 1750
Asp700I	GAANNNNTTC	2 cut(s)	1364, 1632
AspA2I	CCTAGG	1 cut(s)	716
AspLEI	GCGC	2 cut(s)	855, 857
AspS9I	GGNCC	4 cut(s)	244, 728, 1436, 2476
AsuHPI	GGTGA	9 cut(s)	40, 93, 524, 586, 730, 1072, 1718, 1806, 1834
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	4 cut(s)	244, 728, 1436, 2476
AvrII	CCTAGG	1 cut(s)	716
AxyI	CCTNAGG	1 cut(s)	811
BaeGI	GKGCMC	2 cut(s)	136, 2161
BaeI	ACNNNNGTAYC	2 cut(s)	452, 485
BanII	GRGCYC	1 cut(s)	1209
BauI	CACGAG	1 cut(s)	2002
BbsI	GAAGAC	5 cut(s)	58, 993, 1512, 1557, 1762
Bbv12I	GWGCWC	3 cut(s)	1209, 2161, 2673
BbvI	GCAGC	5 cut(s)	991, 1601, 1864, 2444, 2556
BccI	CCATC	8 cut(s)	53, 1159, 1447, 1483, 1493, 1658, 1815, 2449
BcgI	CGANNNNNNTGC	4 cut(s)	1597, 1631, 1993, 2027
BciT130I	CCWGG	4 cut(s)	1306, 1473, 1771, 1818
BciVI	GTATCC	5 cut(s)	648, 756, 817, 1134, 2686
BclI	TGATCA	2 cut(s)	576, 2065
BcoDI	GTCTC	5 cut(s)	274, 878, 1243, 1719, 2674
BfaI	CTAG	8 cut(s)	273, 392, 509, 549, 717, 837, 1317, 2382
BfmI	CTRYAG	5 cut(s)	383, 1375, 2430, 2510, 2530
BfuAI	ACCTGC	1 cut(s)	2006
BfuI	GTATCC	5 cut(s)	648, 756, 817, 1134, 2686
BisI	GCNGC	7 cut(s)	253, 980, 1076, 1590, 1878, 2433, 2545
BlnI	CCTAGG	1 cut(s)	716
BlsI	GCNGC	7 cut(s)	254, 981, 1077, 1591, 1879, 2434, 2546
BmcAI	AGTACT	1 cut(s)	679
Bme1390I	CCNGG	4 cut(s)	1306, 1473, 1771, 1818
Bme18I	GGWCC	4 cut(s)	244, 728, 1436, 2476
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	4 cut(s)	244, 728, 1436, 2476
BmiI	GGNNCC	2 cut(s)	730, 1367
BmrFI	CCNGG	4 cut(s)	1306, 1473, 1771, 1818
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	6 cut(s)	420, 428, 1062, 1599, 2412, 2732
BmuI	ACTGGG	1 cut(s)	736
BpiI	GAAGAC	5 cut(s)	58, 993, 1512, 1557, 1762
BplI	GAGNNNNNCTC	4 cut(s)	329, 361, 2358, 2390
BpuEI	CTTGAG	4 cut(s)	683, 899, 2501, 2657
BsaI	GGTCTC	2 cut(s)	1243, 2674
BsaJI	CCNNGG	4 cut(s)	247, 716, 732, 1472
BsaWI	WCCGGW	2 cut(s)	571, 1276
Bsc4I	CCNNNNNNNGG	5 cut(s)	163, 1189, 1478, 2004, 2404
Bse1I	ACTGG	3 cut(s)	742, 1253, 1918
Bse21I	CCTNAGG	1 cut(s)	811
Bse3DI	GCAATG	2 cut(s)	1987, 2442
BseAI	TCCGGA	1 cut(s)	1276
BseBI	CCWGG	4 cut(s)	1306, 1473, 1771, 1818
BseDI	CCNNGG	4 cut(s)	247, 716, 732, 1472
BseGI	GGATG	4 cut(s)	443, 846, 1826, 2427
BseLI	CCNNNNNNNGG	5 cut(s)	163, 1189, 1478, 2004, 2404
BseMI	GCAATG	2 cut(s)	1987, 2442
BseMII	CTCAG	3 cut(s)	240, 1905, 2384
BseNI	ACTGG	3 cut(s)	742, 1253, 1918
BsePI	GCGCGC	1 cut(s)	853
BseRI	GAGGAG	4 cut(s)	896, 1409, 2379, 2745
BseSI	GKGCMC	2 cut(s)	136, 2161
BseXI	GCAGC	5 cut(s)	991, 1601, 1864, 2444, 2556
BsgI	GTGCAG	1 cut(s)	1984
Bsh1236I	CGCG	1 cut(s)	855
BshFI	GGCC	4 cut(s)	252, 1658, 2205, 2736
BsiHKAI	GWGCWC	3 cut(s)	1209, 2161, 2673
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	572, 1277
BslFI	GGGAC	4 cut(s)	682, 714, 787, 1164
BslI	CCNNNNNNNGG	5 cut(s)	163, 1189, 1478, 2004, 2404
BsmAI	GTCTC	5 cut(s)	274, 878, 1243, 1719, 2674
BsmFI	GGGAC	4 cut(s)	682, 714, 787, 1164
BsnI	GGCC	4 cut(s)	252, 1658, 2205, 2736
Bso31I	GGTCTC	2 cut(s)	1243, 2674
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	4 cut(s)	136, 1209, 2161, 2673
Bsp13I	TCCGGA	1 cut(s)	1276
Bsp19I	CCATGG	1 cut(s)	732
BspACI	CCGC	5 cut(s)	253, 1076, 1961, 2122, 2267
BspANI	GGCC	4 cut(s)	252, 1658, 2205, 2736
BspCNI	CTCAG	3 cut(s)	239, 1904, 2385
BspEI	TCCGGA	1 cut(s)	1276
BspFNI	CGCG	1 cut(s)	855
BspHI	TCATGA	4 cut(s)	360, 1209, 1597, 2488
BspLI	GGNNCC	2 cut(s)	730, 1367
BspMAI	CTGCAG	1 cut(s)	2434
BspMI	ACCTGC	1 cut(s)	2006
BspPI	GGATC	6 cut(s)	932, 1034, 1316, 1569, 1691, 2415
BspTNI	GGTCTC	2 cut(s)	1243, 2674
BsrDI	GCAATG	2 cut(s)	1987, 2442
BsrI	ACTGG	3 cut(s)	742, 1253, 1918
BssECI	CCNNGG	4 cut(s)	247, 716, 732, 1472
BssHII	GCGCGC	1 cut(s)	853
BssSI	CACGAG	1 cut(s)	2002
BssT1I	CCWWGG	3 cut(s)	247, 716, 732
Bst2BI	CACGAG	1 cut(s)	2002
Bst2UI	CCWGG	4 cut(s)	1306, 1473, 1771, 1818
Bst4CI	ACNGT	8 cut(s)	352, 778, 1220, 1376, 1667, 2156, 2303, 2457
Bst6I	CTCTTC	2 cut(s)	19, 293
BstC8I	GCNNGC	4 cut(s)	855, 1676, 1798, 2016
BstDEI	CTNAG	8 cut(s)	17, 201, 226, 811, 1161, 1891, 2334, 2393
BstDSI	CCRYGG	1 cut(s)	732
BstEII	GGTNACC	1 cut(s)	736
BstENI	CCTNNNNNAGG	1 cut(s)	2002
BstF5I	GGATG	4 cut(s)	443, 846, 1826, 2427
BstFNI	CGCG	1 cut(s)	855
BstHHI	GCGC	2 cut(s)	855, 857
BstMAI	GTCTC	5 cut(s)	274, 878, 1243, 1719, 2674
BstMWI	GCNNNNNNNGC	3 cut(s)	1204, 1886, 2541
BstNI	CCWGG	4 cut(s)	1306, 1473, 1771, 1818
BstNSI	RCATGY	2 cut(s)	548, 1103
BstPI	GGTNACC	1 cut(s)	736
BstSCI	CCNGG	4 cut(s)	1304, 1471, 1769, 1816
BstSFI	CTRYAG	5 cut(s)	383, 1375, 2430, 2510, 2530
BstSLI	GKGCMC	2 cut(s)	136, 2161
BstUI	CGCG	1 cut(s)	855
BstV1I	GCAGC	5 cut(s)	991, 1601, 1864, 2444, 2556
BstV2I	GAAGAC	5 cut(s)	58, 993, 1512, 1557, 1762
BstX2I	RGATCY	2 cut(s)	1561, 2407
BstXI	CCANNNNNNTGG	1 cut(s)	974
BstYI	RGATCY	2 cut(s)	1561, 2407
Bsu36I	CCTNAGG	1 cut(s)	811
BsuI	GTATCC	5 cut(s)	648, 756, 817, 1134, 2686
BsuRI	GGCC	4 cut(s)	252, 1658, 2205, 2736
BtgI	CCRYGG	1 cut(s)	732
BtgZI	GCGATG	2 cut(s)	1622, 2069
BtsCI	GGATG	4 cut(s)	443, 846, 1826, 2427
BtsI	GCAGTG	3 cut(s)	448, 1193, 2329
BtsIMutI	CAGTG	9 cut(s)	448, 1193, 1260, 1539, 1643, 1986, 2253, 2329, 2559
BveI	ACCTGC	1 cut(s)	2006
Cac8I	GCNNGC	4 cut(s)	855, 1676, 1798, 2016
CciI	TCATGA	4 cut(s)	360, 1209, 1597, 2488
CfoI	GCGC	2 cut(s)	855, 857
Cfr13I	GGNCC	4 cut(s)	244, 728, 1436, 2476
CseI	GACGC	1 cut(s)	1545
Csp6I	GTAC	3 cut(s)	421, 678, 1414
CviQI	GTAC	3 cut(s)	421, 678, 1414
DdeI	CTNAG	8 cut(s)	17, 201, 226, 811, 1161, 1891, 2334, 2393
DraI	TTTAAA	1 cut(s)	2539
DraIII	CACNNNGTG	1 cut(s)	1199
Eam1104I	CTCTTC	2 cut(s)	19, 293
EarI	CTCTTC	2 cut(s)	19, 293
Ecl136II	GAGCTC	1 cut(s)	1207
Eco130I	CCWWGG	3 cut(s)	247, 716, 732
Eco147I	AGGCCT	1 cut(s)	2736
Eco24I	GRGCYC	1 cut(s)	1209
Eco31I	GGTCTC	2 cut(s)	1243, 2674
Eco47I	GGWCC	4 cut(s)	244, 728, 1436, 2476
Eco53kI	GAGCTC	1 cut(s)	1207
Eco57I	CTGAAG	5 cut(s)	1003, 1065, 1131, 1563, 1619
Eco81I	CCTNAGG	1 cut(s)	811
Eco88I	CYCGRG	1 cut(s)	209
Eco91I	GGTNACC	1 cut(s)	736
EcoICRI	GAGCTC	1 cut(s)	1207
EcoNI	CCTNNNNNAGG	1 cut(s)	2002
EcoO109I	RGGNCCY	1 cut(s)	728
EcoO65I	GGTNACC	1 cut(s)	736
EcoRII	CCWGG	4 cut(s)	1304, 1471, 1769, 1816
EcoT14I	CCWWGG	3 cut(s)	247, 716, 732
EcoT22I	ATGCAT	1 cut(s)	2725
EcoT38I	GRGCYC	1 cut(s)	1209
ErhI	CCWWGG	3 cut(s)	247, 716, 732
FalI	AAGNNNNNCTT	4 cut(s)	2394, 2426, 2463, 2495
FaqI	GGGAC	4 cut(s)	682, 714, 787, 1164
FbaI	TGATCA	2 cut(s)	576, 2065
FblI	GTMKAC	1 cut(s)	2052
Fnu4HI	GCNGC	7 cut(s)	253, 980, 1076, 1590, 1878, 2433, 2545
FokI	GGATG	4 cut(s)	450, 853, 1833, 2434
FriOI	GRGCYC	1 cut(s)	1209
Fsp4HI	GCNGC	7 cut(s)	253, 980, 1076, 1590, 1878, 2433, 2545
FspBI	CTAG	8 cut(s)	273, 392, 509, 549, 717, 837, 1317, 2382
GlaI	GCGC	2 cut(s)	854, 856
GluI	GCNGC	7 cut(s)	253, 980, 1076, 1590, 1878, 2433, 2545
HaeIII	GGCC	4 cut(s)	252, 1658, 2205, 2736
HapII	CCGG	2 cut(s)	572, 1277
HgaI	GACGC	1 cut(s)	1545
HhaI	GCGC	2 cut(s)	855, 857
Hin6I	GCGC	2 cut(s)	853, 855
HinP1I	GCGC	2 cut(s)	853, 855
HincII	GTYRAC	1 cut(s)	2186
HindII	GTYRAC	1 cut(s)	2186
HindIII	AAGCTT	2 cut(s)	659, 1028
HinfI	GANTC	6 cut(s)	276, 493, 1301, 1583, 1727, 2080
HpaII	CCGG	2 cut(s)	572, 1277
HphI	GGTGA	9 cut(s)	40, 93, 524, 586, 730, 1072, 1718, 1806, 1834
Hpy166II	GTNNAC	4 cut(s)	2053, 2159, 2186, 2476
Hpy8I	GTNNAC	4 cut(s)	2053, 2159, 2186, 2476
HpyAV	CCTTC	7 cut(s)	596, 1040, 1100, 1136, 1155, 1643, 1715
HpyCH4III	ACNGT	8 cut(s)	352, 778, 1220, 1376, 1667, 2156, 2303, 2457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1204, 1886, 2541
HpyF3I	CTNAG	8 cut(s)	17, 201, 226, 811, 1161, 1891, 2334, 2393
HspAI	GCGC	2 cut(s)	853, 855
Kpn2I	TCCGGA	1 cut(s)	1276
Ksp22I	TGATCA	2 cut(s)	576, 2065
LmnI	GCTCC	2 cut(s)	337, 2366
Lsp1109I	GCAGC	5 cut(s)	991, 1601, 1864, 2444, 2556
LweI	GCATC	6 cut(s)	420, 428, 1062, 1599, 2412, 2732
MaeI	CTAG	8 cut(s)	273, 392, 509, 549, 717, 837, 1317, 2382
MfeI	CAATTG	2 cut(s)	1866, 2190
MflI	RGATCY	2 cut(s)	1561, 2407
MhlI	GDGCHC	4 cut(s)	136, 1209, 2161, 2673
MlyI	GAGTC	2 cut(s)	285, 1721
MmeI	TCCRAC	3 cut(s)	825, 1459, 2555
Mph1103I	ATGCAT	1 cut(s)	2725
MroI	TCCGGA	1 cut(s)	1276
MroXI	GAANNNNTTC	2 cut(s)	1364, 1632
MslI	CAYNNNNRTG	4 cut(s)	549, 1098, 1819, 2660
MspI	CCGG	2 cut(s)	572, 1277
MspR9I	CCNGG	4 cut(s)	1306, 1473, 1771, 1818
MunI	CAATTG	2 cut(s)	1866, 2190
MvaI	CCWGG	4 cut(s)	1306, 1473, 1771, 1818
MvnI	CGCG	1 cut(s)	855
MwoI	GCNNNNNNNGC	3 cut(s)	1204, 1886, 2541
NcoI	CCATGG	1 cut(s)	732
NlaIV	GGNNCC	2 cut(s)	730, 1367
NmeAIII	GCCGAG	1 cut(s)	2703
NmuCI	GTSAC	8 cut(s)	179, 229, 287, 736, 1706, 1812, 2108, 2297
NsiI	ATGCAT	1 cut(s)	2725
NspI	RCATGY	2 cut(s)	548, 1103
PagI	TCATGA	4 cut(s)	360, 1209, 1597, 2488
PauI	GCGCGC	1 cut(s)	853
PceI	AGGCCT	1 cut(s)	2736
PciI	ACATGT	1 cut(s)	1099
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PdmI	GAANNNNTTC	2 cut(s)	1364, 1632
PfeI	GAWTC	4 cut(s)	493, 1301, 1583, 2080
PflMI	CCANNNNNTGG	1 cut(s)	1189
PfoI	TCCNGGA	1 cut(s)	1304
PkrI	GCNGC	7 cut(s)	254, 981, 1077, 1591, 1879, 2434, 2546
PleI	GAGTC	2 cut(s)	284, 1721
PpsI	GAGTC	2 cut(s)	284, 1721
PpuMI	RGGWCCY	1 cut(s)	728
PscI	ACATGT	1 cut(s)	1099
Psp124BI	GAGCTC	1 cut(s)	1209
Psp5II	RGGWCCY	1 cut(s)	728
Psp6I	CCWGG	4 cut(s)	1304, 1471, 1769, 1816
PspEI	GGTNACC	1 cut(s)	736
PspGI	CCWGG	4 cut(s)	1304, 1471, 1769, 1816
PspN4I	GGNNCC	2 cut(s)	730, 1367
PspPI	GGNCC	4 cut(s)	244, 728, 1436, 2476
PspPPI	RGGWCCY	1 cut(s)	728
PsrI	GAACNNNNNNTAC	2 cut(s)	1208, 1240
PstI	CTGCAG	1 cut(s)	2434
PsuI	RGATCY	2 cut(s)	1561, 2407
PteI	GCGCGC	1 cut(s)	853
RsaI	GTAC	3 cut(s)	422, 679, 1415
RsaNI	GTAC	3 cut(s)	421, 678, 1414
RseI	CAYNNNNRTG	4 cut(s)	549, 1098, 1819, 2660
SacI	GAGCTC	1 cut(s)	1209
SatI	GCNGC	7 cut(s)	253, 980, 1076, 1590, 1878, 2433, 2545
Sau96I	GGNCC	4 cut(s)	244, 728, 1436, 2476
ScaI	AGTACT	1 cut(s)	679
SchI	GAGTC	2 cut(s)	285, 1721
ScrFI	CCNGG	4 cut(s)	1306, 1473, 1771, 1818
SduI	GDGCHC	4 cut(s)	136, 1209, 2161, 2673
SfaNI	GCATC	6 cut(s)	420, 428, 1062, 1599, 2412, 2732
SfcI	CTRYAG	5 cut(s)	383, 1375, 2430, 2510, 2530
SinI	GGWCC	4 cut(s)	244, 728, 1436, 2476
SmiMI	CAYNNNNRTG	4 cut(s)	549, 1098, 1819, 2660
SmlI	CTYRAG	4 cut(s)	662, 878, 2480, 2672
SmoI	CTYRAG	4 cut(s)	662, 878, 2480, 2672
SseBI	AGGCCT	1 cut(s)	2736
SsiI	CCGC	5 cut(s)	253, 1076, 1961, 2122, 2267
SspI	AATATT	2 cut(s)	1766, 1836
SspMI	CTAG	8 cut(s)	273, 392, 509, 549, 717, 837, 1317, 2382
SstI	GAGCTC	1 cut(s)	1209
StuI	AGGCCT	1 cut(s)	2736
StyD4I	CCNGG	4 cut(s)	1304, 1471, 1769, 1816
StyI	CCWWGG	3 cut(s)	247, 716, 732
TaaI	ACNGT	8 cut(s)	352, 778, 1220, 1376, 1667, 2156, 2303, 2457
TaqI	TCGA	2 cut(s)	401, 503
TatI	WGTACW	2 cut(s)	677, 1413
TauI	GCSGC	2 cut(s)	255, 1078
TfiI	GAWTC	4 cut(s)	493, 1301, 1583, 2080
TscAI	CASTG	9 cut(s)	448, 1200, 1260, 1546, 1643, 1993, 2253, 2329, 2559
TseFI	GTSAC	8 cut(s)	179, 229, 287, 736, 1706, 1812, 2108, 2297
TseI	GCWGC	5 cut(s)	979, 1589, 1877, 2432, 2544
Tsp45I	GTSAC	8 cut(s)	179, 229, 287, 736, 1706, 1812, 2108, 2297
TspRI	CASTG	9 cut(s)	448, 1200, 1260, 1546, 1643, 1993, 2253, 2329, 2559
Van91I	CCANNNNNTGG	1 cut(s)	1189
VneI	GTGCAC	1 cut(s)	2157
VpaK11BI	GGWCC	4 cut(s)	244, 728, 1436, 2476
XagI	CCTNNNNNAGG	1 cut(s)	2002
XapI	RAATTY	4 cut(s)	515, 969, 1271, 2740
XbaI	TCTAGA	1 cut(s)	272
XceI	RCATGY	2 cut(s)	548, 1103
XmaJI	CCTAGG	1 cut(s)	716
XmiI	GTMKAC	1 cut(s)	2052
XmnI	GAANNNNTTC	2 cut(s)	1364, 1632
XspI	CTAG	8 cut(s)	273, 392, 509, 549, 717, 837, 1317, 2382
ZrmI	AGTACT	1 cut(s)	679
Zsp2I	ATGCAT	1 cut(s)	2725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.