Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Forward (+)

58657951 .. 58663122

Gene Structure 5172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG387500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGGGAGGTTGGAATCTCATTCATTTCATAGGCTTCATATTGTTGTCTGTTCTCCTCTTGTCGGAGACCTGCCTGGCTAGTGTTAAAAATTTTGGGAAAATTAGTCCGGGGTTTCAAGGGGCTCAGATGGATTGGATTGACAATAATGGGCTGTTTCTCTTGTCTAATCAATCCGATTTTGCTTTTGGCTTCGTCACCACTCCTCAAGATGTCACTTTGTTCCTGCTTTGTATTGTCCACATGGACGGCAGGAATATAGTATGGACTGCAAACAGGGGTTCCCCAGTTTCTAATTCTGATAAATTTGTGTTTGATGATAAGGGTAGTGTGTCGTTGGAAAAAGGTGGAAGTGTGGTTTGGTCTATAGATACTGGTGGCAAATCAGTTTCTGCAATGGAATTGCAGGACTCTGGAAATTTGGTTTTGCTTGGGGATGACAATGGGGTAGTTTGGCAGAGTTTTAGTCATCCAACTGATACTCTATTATGGAACCAGGAGTTTCAGGAAGGAATGAAACTTCAAAGCGAACCAAGCTCCAACAATGTGACCTATATTCTAGAAATCAAGTCCGGCGACTTGATTCTCTCTGCAGGTTTCCAAACACCACAGCCTTATTGGTCCATGGGGAAGGAAAGCCGTAAAACAATCAACACAGGCGGTGGGGCAGTCACTTCAGCTTCTATCAGTGCAAATTCATGGAAGTTTTATGATAGTTCTAAAGTGCTATTATGGCAATTTATTTTCTCATCCAATGTTGATGCTAATGCCACATGGATTGCAGTTTTGGGAAATGATGGGTTTATTTCTTTTTCCAATCTTCAGAATGGAGATTCAAATGGTCCTTCAACAACGAAAATACCAGGGGACTCATGCAGCACCCCCGAACCTTGTGATGCATATTTTGAATGTTTCAGCAACAACAAGTGCCAGTGCCCTTCAGGTCTCAGCTCCCATGCGAATTGCAAGTCGGGGATTGTCACCTCATGTTCAAAGGGTTCTACAACGCTTACAAGTGCTGGTGATGAGCTTTATTATTTTGCATTGGGATTTGTTTCACCCTCTTCAAGAACTGACTTGGAAGGTTGCAAAAGCTCCTGCCTTGGTAATTGTTCATGTGTTGCTCTGTTCTATCAAAACAGTACAAGAAGTTGTTTTATGTTTGACAGGATAGGTAGCTTCCAAGATTCCGATTCCGATTCCCACAAGGGCTTTGTTTCTTATGTTAAAGTGTTGAGTGATGGAGGCAGTGGGGGCAGCGGAAGCAAGAAACACTTCCCTTATGTTGCGATCATTGCTGTTTCGACAGTAGTTGTTATCTGTGGCCTACTCTTTGCAGGATACCGATACTACCAGAGGAAGAGAGATGCACCACCATCTCCTGAAGATGCTTCAGAAGAGGATAATTTCCTGGAAAATTTAACTGGGATGCCAATCCGTTTCAGTTACAAGGATCTTGAAACTGCAACTAACAACTTCTCAAAGAAGCTTGGGCAAGGAGGTTTTGGCTCGGTTTACGAAGGGGTTCTCCCAGATGGAACTCGGCTTGCTGTGAAGAAGTTGGAAGGCATCGGTCAGGGAAAGAAAGAGTTTCGAGCTGAAGTTAGCATCATAGGCAGTATCCATCACCTGCACTTGGTCCGGCTCCGGGGCTTCTGTGCAGAAGGGAGCTATCGACTTCTTGCTTACGAGTACATGGCAAATGGATCCCTGGACAAATGGATATTCAGGAAAAAAGATGAAGAGTTCCTATTGGATTGGGAGACAAGATTCAACATAGCAGTGGGTACTGCCAAAGGACTAGCTTATCTCCATGAAGATTGTGATTCAAAGATTATTCACTGCGACATAAAGCCTGAAAACGTGCTCCTCGACAACAATTACCATGCCAAAGTCTCAGATTTCGGTTTGGCAAAGCTGATGACCCGGGAGCAGAGCCATGTCTTCACAACAATGCGAGGAACTCGAGGGTACCTTGCCCCAGAGTGGATCACAAACTACGCTATTTCGGAGAAAAGTGACGTGTACAGCTACGGAATGCTGCTGCTGGAGATCATTGGTGGAAGAAAGAACTATGACCCATCAGAAACCTCTGGAAAATCGCATTTTCCATCGTATGCCTTCAAGATGTTGGAAGAAGGGAAACTCAAGGACATCTTCGACCCCAAGGTGAATATAGATGACGTTGACGAGAGGGTGTCTACTGCGGTTATGGTAGCATTGTGGTGTATACAGGAAGACATGACTTTGAGGCCGGCAATGACGAAGGTTGTCCAAATGCTTGAAGGCATCTGCTCCGTTCCTCAGCCTCCAACTTCCTCAACAATGGGGTCACGCCTTCACTCGAGTTTCTTCAAATCAATGAGTGAAGGGGGGACTTCCTCAGGTCCATCGGACTGCAACAGCGATGCCCTTTCTGCAGTGCGCCTTTCCGGGCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

813

Amino Acids

88.97

Weight (kDa)

5.45

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	86 - 168	9e-16	D-mannose binding lectin
PK_Tyr_Ser-Thr	PF07714	492 - 759	7.2e-42	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	493 - 758	6.1e-49	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1635
Acc36I	ACCTGC	3 cut(s)	77, 581, 1635
Acc65I	GGTACC	1 cut(s)	1968
AccB1I	GGYRCC	1 cut(s)	1968
AccI	GTMKAC	2 cut(s)	2198, 2227
AciI	CCGC	3 cut(s)	657, 1257, 2204
AclWI	GGATC	4 cut(s)	1458, 1698, 1711, 1994
AcsI	RAATTY	5 cut(s)	88, 302, 415, 691, 1414
AcuI	CTGAAG	6 cut(s)	657, 803, 921, 1374, 1401, 1617
AfaI	GTAC	5 cut(s)	1141, 1691, 1786, 1970, 2024
AfiI	CCNNNNNNNGG	4 cut(s)	61, 1633, 1645, 1983
AflIII	ACRYGT	1 cut(s)	2019
AjiI	CACGTC	1 cut(s)	2020
AjnI	CCWGG	5 cut(s)	72, 492, 859, 1407, 1707
AjuI	GAANNNNNNNTTGG	2 cut(s)	340, 372
Alw21I	GWGCWC	1 cut(s)	1866
Alw26I	GTCTC	4 cut(s)	59, 947, 1754, 1897
AlwI	GGATC	4 cut(s)	1458, 1698, 1711, 1994
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	3 cut(s)	1923, 1962, 2341
AoxI	GGCC	3 cut(s)	1321, 2249, 2432
ApeKI	GCWGC	4 cut(s)	873, 1254, 2038, 2041
ApoI	RAATTY	5 cut(s)	88, 302, 415, 691, 1414
ArsI	GACNNNNNNTTYG	2 cut(s)	950, 982
Asp700I	GAANNNNTTC	2 cut(s)	1271, 1521
Asp718I	GGTACC	1 cut(s)	1968
AspLEI	GCGC	1 cut(s)	2424
AspS9I	GGNCC	5 cut(s)	618, 839, 1636, 2384, 2432
AsuC2I	CCSGG	5 cut(s)	108, 1646, 1924, 1925, 2431
AsuHPI	GGTGA	6 cut(s)	187, 970, 1031, 1047, 1616, 2179
AvaI	CYCGRG	3 cut(s)	1923, 1962, 2341
AvaII	GGWCC	4 cut(s)	618, 839, 1636, 2384
AxyI	CCTNAGG	1 cut(s)	2380
BaeGI	GKGCMC	1 cut(s)	935
BamHI	GGATCC	1 cut(s)	1703
BanI	GGYRCC	1 cut(s)	1968
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	2 cut(s)	1933, 2241
Bbv12I	GWGCWC	1 cut(s)	1866
BbvCI	CCTCAGC	1 cut(s)	2301
BbvI	GCAGC	4 cut(s)	885, 1266, 2025, 2028
BccI	CCATC	9 cut(s)	121, 788, 1232, 1381, 1526, 1629, 2086, 2116, 2395
BceAI	ACGGC	2 cut(s)	262, 621
BciT130I	CCWGG	5 cut(s)	74, 494, 861, 1409, 1709
BciVI	GTATCC	2 cut(s)	1331, 1628
BcnI	CCSGG	5 cut(s)	108, 1646, 1924, 1925, 2431
BcoDI	GTCTC	4 cut(s)	59, 947, 1754, 1897
BfaI	CTAG	3 cut(s)	78, 557, 1799
BfmI	CTRYAG	3 cut(s)	363, 588, 2415
BfuAI	ACCTGC	3 cut(s)	77, 581, 1635
BfuI	GTATCC	2 cut(s)	1331, 1628
BisI	GCNGC	4 cut(s)	874, 1255, 2039, 2042
BlsI	GCNGC	4 cut(s)	875, 1256, 2040, 2043
Bme18I	GGWCC	4 cut(s)	618, 839, 1636, 2384
BmeT110I	CYCGRG	3 cut(s)	1923, 1962, 2341
BmgBI	CACGTC	1 cut(s)	2020
BmgT120I	GGNCC	5 cut(s)	618, 839, 1636, 2384, 2432
BmiI	GGNNCC	5 cut(s)	280, 491, 1643, 1705, 1970
BmrI	ACTGGG	2 cut(s)	278, 1431
BmsI	GCATC	9 cut(s)	748, 883, 1354, 1375, 1416, 1575, 1614, 2295, 2395
BmuI	ACTGGG	2 cut(s)	278, 1431
BpiI	GAAGAC	2 cut(s)	1933, 2241
BpmI	CTGGAG	1 cut(s)	2066
Bpu10I	CCTNAGC	1 cut(s)	2301
BpuEI	CTTGAG	2 cut(s)	189, 2129
BpuMI	CCSGG	5 cut(s)	108, 1646, 1924, 1925, 2431
BsaBI	GATNNNNATC	1 cut(s)	1430
BsaI	GGTCTC	2 cut(s)	59, 947
BsaJI	CCNNGG	8 cut(s)	107, 621, 860, 1099, 1645, 1707, 1923, 2163
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 1633, 1645, 1983
Bse118I	RCCGGY	1 cut(s)	2251
Bse1I	ACTGG	4 cut(s)	284, 376, 928, 1426
Bse21I	CCTNAGG	1 cut(s)	2380
Bse3DI	GCAATG	3 cut(s)	399, 1290, 2262
Bse8I	GATNNNNATC	1 cut(s)	1430
BseBI	CCWGG	5 cut(s)	74, 494, 861, 1409, 1709
BseDI	CCNNGG	8 cut(s)	107, 621, 860, 1099, 1645, 1707, 1923, 2163
BseGI	GGATG	4 cut(s)	439, 466, 746, 1431
BseJI	GATNNNNATC	1 cut(s)	1430
BseLI	CCNNNNNNNGG	4 cut(s)	61, 1633, 1645, 1983
BseMI	GCAATG	3 cut(s)	399, 1290, 2262
BseMII	CTCAG	5 cut(s)	137, 958, 1908, 2315, 2394
BseNI	ACTGG	4 cut(s)	284, 376, 928, 1426
BseRI	GAGGAG	3 cut(s)	44, 192, 1856
BseSI	GKGCMC	1 cut(s)	935
BseXI	GCAGC	4 cut(s)	885, 1266, 2025, 2028
BsgI	GTGCAG	2 cut(s)	1613, 1677
BshFI	GGCC	3 cut(s)	1323, 2251, 2434
BshNI	GGYRCC	1 cut(s)	1968
BsiHKAI	GWGCWC	1 cut(s)	1866
BsiHKCI	CYCGRG	3 cut(s)	1923, 1962, 2341
BsiSI	CCGG	7 cut(s)	107, 570, 1639, 1645, 1924, 2252, 2430
BslFI	GGGAC	2 cut(s)	878, 2386
BslI	CCNNNNNNNGG	4 cut(s)	61, 1633, 1645, 1983
BsmAI	GTCTC	4 cut(s)	59, 947, 1754, 1897
BsmFI	GGGAC	2 cut(s)	878, 2386
BsmI	GAATGC	1 cut(s)	2040
BsnI	GGCC	3 cut(s)	1323, 2251, 2434
Bso31I	GGTCTC	2 cut(s)	59, 947
BsoBI	CYCGRG	3 cut(s)	1923, 1962, 2341
Bsp1286I	GDGCHC	3 cut(s)	124, 935, 1866
Bsp1407I	TGTACA	1 cut(s)	2022
Bsp143I	GATC	5 cut(s)	1287, 1450, 1703, 1986, 2049
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	3 cut(s)	657, 1257, 2204
BspANI	GGCC	3 cut(s)	1323, 2251, 2434
BspCNI	CTCAG	5 cut(s)	136, 957, 1907, 2314, 2393
BspLI	GGNNCC	5 cut(s)	280, 491, 1643, 1705, 1970
BspMAI	CTGCAG	2 cut(s)	592, 2419
BspMI	ACCTGC	3 cut(s)	77, 581, 1635
BspPI	GGATC	4 cut(s)	1458, 1698, 1711, 1994
BspT107I	GGYRCC	1 cut(s)	1968
BspTNI	GGTCTC	2 cut(s)	59, 947
BsrDI	GCAATG	3 cut(s)	399, 1290, 2262
BsrFI	RCCGGY	1 cut(s)	2251
BsrGI	TGTACA	1 cut(s)	2022
BsrI	ACTGG	4 cut(s)	284, 376, 928, 1426
BssAI	RCCGGY	1 cut(s)	2251
BssECI	CCNNGG	8 cut(s)	107, 621, 860, 1099, 1645, 1707, 1923, 2163
BssMI	GATC	5 cut(s)	1287, 1450, 1703, 1986, 2049
BssNAI	GTATAC	1 cut(s)	2228
BssT1I	CCWWGG	3 cut(s)	621, 1099, 2163
Bst1107I	GTATAC	1 cut(s)	2228
Bst2UI	CCWGG	5 cut(s)	74, 494, 861, 1409, 1709
Bst4CI	ACNGT	2 cut(s)	1139, 1306
Bst6I	CTCTTC	4 cut(s)	1066, 1352, 1389, 1734
BstAUI	TGTACA	1 cut(s)	2022
BstC8I	GCNNGC	2 cut(s)	1545, 2253
BstDEI	CTNAG	5 cut(s)	123, 944, 1894, 2301, 2380
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	4 cut(s)	439, 466, 746, 1431
BstHHI	GCGC	1 cut(s)	2424
BstKTI	GATC	5 cut(s)	1290, 1453, 1706, 1989, 2052
BstMAI	GTCTC	4 cut(s)	59, 947, 1754, 1897
BstMBI	GATC	5 cut(s)	1287, 1450, 1703, 1986, 2049
BstMWI	GCNNNNNNNGC	7 cut(s)	531, 730, 1251, 1260, 1292, 1611, 2414
BstNI	CCWGG	5 cut(s)	74, 494, 861, 1409, 1709
BstSFI	CTRYAG	3 cut(s)	363, 588, 2415
BstSLI	GKGCMC	1 cut(s)	935
BstV1I	GCAGC	4 cut(s)	885, 1266, 2025, 2028
BstV2I	GAAGAC	2 cut(s)	1933, 2241
BstX2I	RGATCY	2 cut(s)	1450, 1703
BstYI	RGATCY	2 cut(s)	1450, 1703
BstZ17I	GTATAC	1 cut(s)	2228
Bsu36I	CCTNAGG	1 cut(s)	2380
BsuI	GTATCC	2 cut(s)	1331, 1628
BsuRI	GGCC	3 cut(s)	1323, 2251, 2434
BtgI	CCRYGG	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	2418
BtrI	CACGTC	1 cut(s)	2020
BtsCI	GGATG	4 cut(s)	439, 466, 746, 1431
BtsI	GCAGTG	4 cut(s)	1252, 1785, 1837, 2424
BtsIMutI	CAGTG	6 cut(s)	691, 935, 1252, 1785, 1837, 2424
BveI	ACCTGC	3 cut(s)	77, 581, 1635
Cac8I	GCNNGC	2 cut(s)	1545, 2253
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	2424
Cfr10I	RCCGGY	1 cut(s)	2251
Cfr13I	GGNCC	5 cut(s)	618, 839, 1636, 2384, 2432
Cfr9I	CCCGGG	1 cut(s)	1923
Csp6I	GTAC	5 cut(s)	1140, 1690, 1785, 1969, 2023
CspCI	CAANNNNNGTGG	2 cut(s)	757, 792
CviQI	GTAC	5 cut(s)	1140, 1690, 1785, 1969, 2023
DdeI	CTNAG	5 cut(s)	123, 944, 1894, 2301, 2380
DpnI	GATC	5 cut(s)	1289, 1452, 1705, 1988, 2051
DpnII	GATC	5 cut(s)	1287, 1450, 1703, 1986, 2049
Eam1104I	CTCTTC	4 cut(s)	1066, 1352, 1389, 1734
EarI	CTCTTC	4 cut(s)	1066, 1352, 1389, 1734
Eco130I	CCWWGG	3 cut(s)	621, 1099, 2163
Eco24I	GRGCYC	1 cut(s)	124
Eco31I	GGTCTC	2 cut(s)	59, 947
Eco47I	GGWCC	4 cut(s)	618, 839, 1636, 2384
Eco57I	CTGAAG	6 cut(s)	657, 803, 921, 1374, 1401, 1617
Eco81I	CCTNAGG	1 cut(s)	2380
Eco88I	CYCGRG	3 cut(s)	1923, 1962, 2341
EcoRII	CCWGG	5 cut(s)	72, 492, 859, 1407, 1707
EcoT14I	CCWWGG	3 cut(s)	621, 1099, 2163
EcoT22I	ATGCAT	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	3 cut(s)	621, 1099, 2163
FalI	AAGNNNNNCTT	4 cut(s)	1256, 1288, 2138, 2170
FaqI	GGGAC	2 cut(s)	878, 2386
FblI	GTMKAC	2 cut(s)	2198, 2227
Fnu4HI	GCNGC	4 cut(s)	874, 1255, 2039, 2042
FokI	GGATG	4 cut(s)	446, 453, 733, 1438
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	4 cut(s)	874, 1255, 2039, 2042
FspBI	CTAG	3 cut(s)	78, 557, 1799
GlaI	GCGC	1 cut(s)	2423
GluI	GCNGC	4 cut(s)	874, 1255, 2039, 2042
GsuI	CTGGAG	1 cut(s)	2066
HaeIII	GGCC	3 cut(s)	1323, 2251, 2434
HapII	CCGG	7 cut(s)	107, 570, 1639, 1645, 1924, 2252, 2430
HhaI	GCGC	1 cut(s)	2424
Hin6I	GCGC	1 cut(s)	2422
HinP1I	GCGC	1 cut(s)	2422
HincII	GTYRAC	1 cut(s)	2185
HindII	GTYRAC	1 cut(s)	2185
HindIII	AAGCTT	1 cut(s)	1484
HpaII	CCGG	7 cut(s)	107, 570, 1639, 1645, 1924, 2252, 2430
HphI	GGTGA	6 cut(s)	187, 970, 1031, 1047, 1616, 2179
Hpy166II	GTNNAC	6 cut(s)	238, 1513, 2023, 2185, 2199, 2228
Hpy8I	GTNNAC	6 cut(s)	238, 1513, 2023, 2185, 2199, 2228
HpyCH4III	ACNGT	2 cut(s)	1139, 1306
HpyCH4IV	ACGT	3 cut(s)	1860, 2019, 2181
HpyF10VI	GCNNNNNNNGC	7 cut(s)	531, 730, 1251, 1260, 1292, 1611, 2414
HpyF3I	CTNAG	5 cut(s)	123, 944, 1894, 2301, 2380
HpySE526I	ACGT	3 cut(s)	1860, 2019, 2181
HspAI	GCGC	1 cut(s)	2422
KpnI	GGTACC	1 cut(s)	1972
KroI	GCCGGC	1 cut(s)	2251
KroNI	GCCGGC	1 cut(s)	2253
Kzo9I	GATC	5 cut(s)	1287, 1450, 1703, 1986, 2049
LmnI	GCTCC	8 cut(s)	539, 953, 1097, 1647, 1665, 1869, 1927, 2297
Lsp1109I	GCAGC	4 cut(s)	885, 1266, 2025, 2028
LweI	GCATC	9 cut(s)	748, 883, 1354, 1375, 1416, 1575, 1614, 2295, 2395
MaeI	CTAG	3 cut(s)	78, 557, 1799
MaeII	ACGT	3 cut(s)	1860, 2019, 2181
MaeIII	GTNAC	8 cut(s)	193, 211, 544, 667, 976, 1442, 2015, 2328
MalI	GATC	5 cut(s)	1289, 1452, 1705, 1988, 2051
MboI	GATC	5 cut(s)	1287, 1450, 1703, 1986, 2049
MflI	RGATCY	2 cut(s)	1450, 1703
MhlI	GDGCHC	3 cut(s)	124, 935, 1866
MlyI	GAGTC	2 cut(s)	401, 860
MmeI	TCCRAC	7 cut(s)	42, 315, 494, 561, 1539, 2109, 2333
Mph1103I	ATGCAT	1 cut(s)	898
MroNI	GCCGGC	1 cut(s)	2251
MroXI	GAANNNNTTC	2 cut(s)	1271, 1521
MseI	TTAA	3 cut(s)	84, 1224, 1418
MslI	CAYNNNNRTG	3 cut(s)	1778, 1949, 2221
MspA1I	CMGCKG	1 cut(s)	1257
MspI	CCGG	7 cut(s)	107, 570, 1639, 1645, 1924, 2252, 2430
Mva1269I	GAATGC	1 cut(s)	2040
MvaI	CCWGG	5 cut(s)	74, 494, 861, 1409, 1709
MwoI	GCNNNNNNNGC	7 cut(s)	531, 730, 1251, 1260, 1292, 1611, 2414
NaeI	GCCGGC	1 cut(s)	2253
NciI	CCSGG	5 cut(s)	108, 1646, 1924, 1925, 2431
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	5 cut(s)	1287, 1450, 1703, 1986, 2049
NgoMIV	GCCGGC	1 cut(s)	2251
NlaIV	GGNNCC	5 cut(s)	280, 491, 1643, 1705, 1970
NmeAIII	GCCGAG	1 cut(s)	1519
NmuCI	GTSAC	7 cut(s)	193, 211, 544, 667, 976, 2015, 2328
NsiI	ATGCAT	1 cut(s)	898
PaeR7I	CTCGAG	2 cut(s)	1962, 2341
PaqCI	CACCTGC	1 cut(s)	1635
PcsI	WCGNNNNNNNCGW	1 cut(s)	1866
PctI	GAATGC	1 cut(s)	2040
PdiI	GCCGGC	1 cut(s)	2253
PdmI	GAANNNNTTC	2 cut(s)	1271, 1521
PfeI	GAWTC	8 cut(s)	13, 580, 830, 1184, 1190, 1196, 1767, 1823
PfoI	TCCNGGA	1 cut(s)	1407
PkrI	GCNGC	4 cut(s)	875, 1256, 2040, 2043
PleI	GAGTC	2 cut(s)	401, 860
PpsI	GAGTC	2 cut(s)	401, 860
Psp6I	CCWGG	5 cut(s)	72, 492, 859, 1407, 1707
PspGI	CCWGG	5 cut(s)	72, 492, 859, 1407, 1707
PspN4I	GGNNCC	5 cut(s)	280, 491, 1643, 1705, 1970
PspPI	GGNCC	5 cut(s)	618, 839, 1636, 2384, 2432
PspXI	VCTCGAGB	2 cut(s)	1962, 2341
PstI	CTGCAG	2 cut(s)	592, 2419
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	2 cut(s)	1450, 1703
RsaI	GTAC	5 cut(s)	1141, 1691, 1786, 1970, 2024
RsaNI	GTAC	5 cut(s)	1140, 1690, 1785, 1969, 2023
RseI	CAYNNNNRTG	3 cut(s)	1778, 1949, 2221
SaqAI	TTAA	3 cut(s)	84, 1224, 1418
SatI	GCNGC	4 cut(s)	874, 1255, 2039, 2042
Sau3AI	GATC	5 cut(s)	1287, 1450, 1703, 1986, 2049
Sau96I	GGNCC	5 cut(s)	618, 839, 1636, 2384, 2432
SchI	GAGTC	2 cut(s)	401, 860
SduI	GDGCHC	3 cut(s)	124, 935, 1866
SfaNI	GCATC	9 cut(s)	748, 883, 1354, 1375, 1416, 1575, 1614, 2295, 2395
SfcI	CTRYAG	3 cut(s)	363, 588, 2415
Sfr274I	CTCGAG	2 cut(s)	1962, 2341
SinI	GGWCC	4 cut(s)	618, 839, 1636, 2384
SlaI	CTCGAG	2 cut(s)	1962, 2341
SmaI	CCCGGG	1 cut(s)	1925
SmiMI	CAYNNNNRTG	3 cut(s)	1778, 1949, 2221
SmlI	CTYRAG	4 cut(s)	204, 1962, 2144, 2341
SmoI	CTYRAG	4 cut(s)	204, 1962, 2144, 2341
SsiI	CCGC	3 cut(s)	657, 1257, 2204
SspMI	CTAG	3 cut(s)	78, 557, 1799
StyI	CCWWGG	3 cut(s)	621, 1099, 2163
TaaI	ACNGT	2 cut(s)	1139, 1306
TaiI	ACGT	3 cut(s)	1863, 2022, 2184
TaqI	TCGA	7 cut(s)	1301, 1591, 1672, 1869, 1963, 2157, 2342
TaqII	GACCGA	1 cut(s)	1559
TatI	WGTACW	3 cut(s)	1139, 1689, 2022
TfiI	GAWTC	8 cut(s)	13, 580, 830, 1184, 1190, 1196, 1767, 1823
Tru1I	TTAA	3 cut(s)	84, 1224, 1418
Tru9I	TTAA	3 cut(s)	84, 1224, 1418
TscAI	CASTG	6 cut(s)	691, 935, 1252, 1785, 1844, 2424
TseFI	GTSAC	7 cut(s)	193, 211, 544, 667, 976, 2015, 2328
TseI	GCWGC	4 cut(s)	873, 1254, 2038, 2041
Tsp45I	GTSAC	7 cut(s)	193, 211, 544, 667, 976, 2015, 2328
TspDTI	ATGAA	8 cut(s)	11, 16, 25, 527, 684, 1101, 1752, 1827
TspGWI	ACGGA	3 cut(s)	1424, 2046, 2284
TspMI	CCCGGG	1 cut(s)	1923
TspRI	CASTG	6 cut(s)	691, 935, 1252, 1785, 1844, 2424
VpaK11BI	GGWCC	4 cut(s)	618, 839, 1636, 2384
XapI	RAATTY	5 cut(s)	88, 302, 415, 691, 1414
XbaI	TCTAGA	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XhoI	CTCGAG	2 cut(s)	1962, 2341
XmaI	CCCGGG	1 cut(s)	1923
XmiI	GTMKAC	2 cut(s)	2198, 2227
XmnI	GAANNNNTTC	2 cut(s)	1271, 1521
XspI	CTAG	3 cut(s)	78, 557, 1799
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.