Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Forward (+)

58829918 .. 58830766

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG401800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAACTTGTGAGCGATCCAAGCTCCAACAACGTGAGCTATATTCTCGAAATCAAGTTTGGTGACATGATTCTTTCTTCAGGTTTCCAAACACCACAGCCTTATTGGTCTTTGGGGAACGAAAGCCGTAAAACAATCAACAAAGAAGGCGGGGAAGTCACTTCAGCATCTATTAGTGCAAATTCTTGGAAGTTCTATGATCAAAGGAAAGTGCTACTTCGGCAGTTTATTTTCTCGGACAATGCTGATGCAAATGCCTCATGGATTGCAGTTTTGGGAAATGATGGAGTTATTTCTTTCTTCAATCTTCAGAATGGAGGTCCAAGTGGTCCTTCTCCTTCCACAACAAAAATACCTGGCGGAGACTCATGCAGCACCCCGGAAGCTTGTGCTCCATATTTTGAATGTTTGAGTGACAACTCCTGCCAGTGCCCTTCAGGTCTTAGCTCCCGTTCTAATTGTACGACGGGGATTGTCTCTTCATGTGATCCTTCAGAGGGTTCCATAGAGCTTGTAAATGCTGGTGATGGGCTCTATTATTTTCCGCTGCTATTTGTTTCACCCTCTTCGAAAACTGATTTGGATGGTTGCCAAAAATCTTGCATCGGCAACTGTTCATGTGTTGCTTTGTTCTTCCAAAACAGTACAAGAAATTGTTATCTGTTTGACAGGATAGGTAGCTTCGAGAAGGGCTCTGGTTTTGCTCCTTACGTTAAGGTCCTGAGCAATGGAGCTGGCGGCAGTGGGGGAAGTCGAAGCAGAAGCAAGAAATGGTTCCCTTACATTATGATAGCAGCTATTTGTTATCTGTACGCTGCTTACTTTATGTGGGATACAATCACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr

Protein Analysis

282

Amino Acids

30.38

Weight (kDa)

5.26

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	150, 360, 545, 738
AclWI	GGATC	2 cut(s)	11, 482
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	5 cut(s)	63, 147, 293, 420, 477
AfaI	GTAC	3 cut(s)	463, 646, 812
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	304, 404
AjnI	CCWGG	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	6 cut(s)	42, 74, 316, 348, 563, 595
AluBI	AGCT	8 cut(s)	24, 39, 386, 447, 511, 681, 734, 797
AluI	AGCT	8 cut(s)	24, 39, 386, 447, 511, 681, 734, 797
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	357, 481
AlwI	GGATC	2 cut(s)	11, 482
ApeKI	GCWGC	4 cut(s)	372, 547, 794, 815
ApoI	RAATTY	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	773
AspS9I	GGNCC	3 cut(s)	320, 329, 718
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	3 cut(s)	74, 536, 552
AsuII	TTCGAA	1 cut(s)	569
AvaII	GGWCC	3 cut(s)	320, 329, 718
BaeGI	GKGCMC	1 cut(s)	434
BanII	GRGCYC	2 cut(s)	534, 695
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	4 cut(s)	384, 534, 802, 806
BccI	CCATC	3 cut(s)	278, 521, 578
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	826
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	2 cut(s)	357, 481
BfuI	GTATCC	1 cut(s)	826
BisI	GCNGC	5 cut(s)	373, 548, 739, 795, 816
BlsI	GCNGC	5 cut(s)	374, 549, 740, 796, 817
Bme1390I	CCNGG	2 cut(s)	357, 380
Bme18I	GGWCC	3 cut(s)	320, 329, 718
BmgT120I	GGNCC	3 cut(s)	320, 329, 718
BmiI	GGNNCC	2 cut(s)	502, 776
BmrFI	CCNGG	2 cut(s)	357, 380
BmsI	GCATC	3 cut(s)	176, 238, 612
BplI	GAGNNNNNCTC	2 cut(s)	677, 709
Bpu10I	CCTNAGC	1 cut(s)	722
Bpu14I	TTCGAA	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	384, 534, 802, 806
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	357, 481
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	4 cut(s)	394, 434, 534, 695
Bsp143I	GATC	3 cut(s)	16, 199, 487
BspACI	CCGC	4 cut(s)	150, 360, 545, 738
BspCNI	CTCAG	1 cut(s)	714
BspLI	GGNNCC	2 cut(s)	502, 776
BspPI	GGATC	2 cut(s)	11, 482
BspT104I	TTCGAA	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	733
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	16, 199, 487
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	614, 644
Bst6I	CTCTTC	2 cut(s)	484, 571
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	736
BstDEI	CTNAG	2 cut(s)	443, 722
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	3 cut(s)	19, 202, 490
BstMAI	GTCTC	2 cut(s)	357, 481
BstMBI	GATC	3 cut(s)	16, 199, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 220
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	355, 378
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	4 cut(s)	384, 534, 802, 806
BsuI	GTATCC	1 cut(s)	826
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	434, 748
Cac8I	GCNNGC	1 cut(s)	736
Cfr13I	GGNCC	3 cut(s)	320, 329, 718
Csp6I	GTAC	3 cut(s)	462, 645, 811
CviAII	CATG	6 cut(s)	67, 261, 369, 483, 618, 846
CviQI	GTAC	3 cut(s)	462, 645, 811
DdeI	CTNAG	2 cut(s)	443, 722
DpnI	GATC	3 cut(s)	18, 201, 489
DpnII	GATC	3 cut(s)	16, 199, 487
Eam1104I	CTCTTC	2 cut(s)	484, 571
EarI	CTCTTC	2 cut(s)	484, 571
EciI	GGCGGA	1 cut(s)	375
Eco24I	GRGCYC	2 cut(s)	534, 695
Eco47I	GGWCC	3 cut(s)	320, 329, 718
Eco57I	CTGAAG	5 cut(s)	63, 147, 293, 420, 477
EcoO109I	RGGNCCY	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	2 cut(s)	534, 695
FaeI	CATG	6 cut(s)	70, 264, 372, 486, 621, 849
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 316, 348
FatI	CATG	6 cut(s)	66, 260, 368, 482, 617, 845
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	5 cut(s)	373, 548, 739, 795, 816
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	2 cut(s)	534, 695
Fsp4HI	GCNGC	5 cut(s)	373, 548, 739, 795, 816
GluI	GCNGC	5 cut(s)	373, 548, 739, 795, 816
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	6 cut(s)	70, 264, 372, 486, 621, 849
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	2 cut(s)	70, 365
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	74, 536, 552
Hpy188I	TCNGA	3 cut(s)	238, 312, 496
Hpy188III	TCNNGA	3 cut(s)	47, 685, 721
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	6 cut(s)	140, 342, 348, 444, 501, 682
HpyCH4III	ACNGT	2 cut(s)	614, 644
HpyCH4IV	ACGT	2 cut(s)	33, 711
HpyCH4V	TGCA	5 cut(s)	179, 251, 269, 372, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 220
HpyF3I	CTNAG	2 cut(s)	443, 722
HpySE526I	ACGT	2 cut(s)	33, 711
Hsp92II	CATG	6 cut(s)	70, 264, 372, 486, 621, 849
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	16, 199, 487
LmnI	GCTCC	5 cut(s)	29, 397, 452, 709, 731
Lsp1109I	GCAGC	4 cut(s)	384, 534, 802, 806
LweI	GCATC	3 cut(s)	176, 238, 612
MaeII	ACGT	2 cut(s)	33, 711
MaeIII	GTNAC	3 cut(s)	62, 157, 413
MalI	GATC	3 cut(s)	18, 201, 489
MboI	GATC	3 cut(s)	16, 199, 487
MboII	GAAGA	6 cut(s)	69, 292, 299, 471, 558, 625
MhlI	GDGCHC	4 cut(s)	394, 434, 534, 695
MluCI	AATT	3 cut(s)	181, 457, 652
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	4 cut(s)	268, 311, 490, 574
MroXI	GAANNNNTTC	1 cut(s)	773
MseI	TTAA	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	357, 380
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	21, 220
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	3 cut(s)	16, 199, 487
NlaIII	CATG	6 cut(s)	70, 264, 372, 486, 621, 849
NlaIV	GGNNCC	2 cut(s)	502, 776
NmuCI	GTSAC	3 cut(s)	62, 157, 413
NspV	TTCGAA	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	374, 549, 740, 796, 817
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	718
Psp5II	RGGWCCY	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	502, 776
PspPI	GGNCC	3 cut(s)	320, 329, 718
PspPPI	RGGWCCY	1 cut(s)	718
RsaI	GTAC	3 cut(s)	463, 646, 812
RsaNI	GTAC	3 cut(s)	462, 645, 811
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	5 cut(s)	373, 548, 739, 795, 816
Sau3AI	GATC	3 cut(s)	16, 199, 487
Sau96I	GGNCC	3 cut(s)	320, 329, 718
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	357, 380
SduI	GDGCHC	4 cut(s)	394, 434, 534, 695
SfaNI	GCATC	3 cut(s)	176, 238, 612
SfuI	TTCGAA	1 cut(s)	569
SinI	GGWCC	3 cut(s)	320, 329, 718
Sse9I	AATT	3 cut(s)	181, 457, 652
SsiI	CCGC	4 cut(s)	150, 360, 545, 738
StyD4I	CCNGG	2 cut(s)	355, 378
TaaI	ACNGT	2 cut(s)	614, 644
TaiI	ACGT	2 cut(s)	36, 714
TaqI	TCGA	4 cut(s)	48, 569, 684, 754
TasI	AATT	3 cut(s)	181, 457, 652
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	2 cut(s)	434, 748
TseFI	GTSAC	3 cut(s)	62, 157, 413
TseI	GCWGC	4 cut(s)	372, 547, 794, 815
Tsp45I	GTSAC	3 cut(s)	62, 157, 413
TspDTI	ATGAA	3 cut(s)	17, 471, 606
TspRI	CASTG	2 cut(s)	434, 748
VpaK11BI	GGWCC	3 cut(s)	320, 329, 718
XapI	RAATTY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.