Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Reverse (-)

1446005 .. 1449210

Gene Structure 3206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG008200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGCTGATGTTCGAAATTTTGGGAAAATTAGTCCGGGGTTTCAAGGAGCTCAGCAGAATTGGATCGACAATAATGGGTTGTTTCTCTTGTCAAACCAATCTGAATTTGGTTTTGGCTTCGTCATCACTCCTCAAGATGTCACTTTGTTCCTGCTTTGTATTGTCCACATGGCCAGCATGAATATAGTATGGACTGCAAATAGGGGCTCCCCAGTTTCTAGTTCCGATAAATTTGTGTTTGATGACAAGGGTAGTTTGTCTTTGCAAAAAAGTGGAAGTGTGGTTTGGTCTGTAGATACTGGTGGCAAAGCAATTACTGCAATGGAGTTGCGGGACTCGGGAAATTTGGTTTTGCTTGGGGATGACAATGGAGTAGTTTGGCAGAGTTTTAGTCATCCAACCGATACTCTATTATGGAACCAGGAGTTTCAGGAAGGAATGAAACTTCAAAGCGAACCAAGCTCCAACAATGTGACCTACATTCTTGAAATCAAGTCCGGCGACTTGATTCTTTCTGCAGGTTACCAAACACCACAGCCTTATTGGTCCATGGGGAAGGAAAGCCGTAAAACAATCAACACAGAAGGTGGGGCAGTCACTTCGGCATCTATCAGTGTAAATTCATGGAAGTTCTATGATAGTTCCAAAGTGCGAGTATGGCAATTCATTTTCTCATCCAATGTTGATGTTAATGCCACATGGATTGCAGTTTTGGGAAATGATGGATATATTTCTTTTTCCAATCTTCAGAATGGAGGTTCAAATGGTCCTTCAACGACGAAAATACCAGAGGGCCTATGCAGCACCCCCGAACCTTGTGACGCATATTCTGAATGTTTCAGCAACAACAAGTGCAAGTGCCCTTCAGGTCTTAGCTCCCGTGCGAATTGCAAGTCGGGGATTGTCACCTCATGTTCAAAGGGTTCTACAATGCTTACAACTGCTGGTGATGGGCTCTATTATTTTGCATTGGAATTTGTTTCACCCTCTTCAAGAACTGACTTGGAGGGTTGCCAAAGCTCTTGCCTTAGGTGTAGTGTGTCGTTGCAAAAGGGTGGAAGTGTGGTTTGGTCTATAGATACTGGTGGCAAAACAGTTACTGCAACGGAGTTGCGGGACTCGGGAAATTTGGTTCTGCTTGGGGATGACAATGGAGTAGTTTGGCAGAGTTCTAGTCATCCAACTGATACTCTATTATGGAACCAGGAGTCTCAGGAAGGAATGAAACTTCAAAGCGAACCAATCTCCAACAATGTGACCTACAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

423

Amino Acids

45.74

Weight (kDa)

4.84

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	62 - 144	3.8e-17	D-mannose binding lectin
B_lectin	PF01453	350 - 402	3.5e-08	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1264
Acc36I	ACCTGC	1 cut(s)	509
AciI	CCGC	2 cut(s)	331, 1114
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	7 cut(s)	16, 104, 230, 343, 619, 974, 1126
AcuI	CTGAAG	2 cut(s)	731, 849
AgsI	TTSAA	8 cut(s)	44, 449, 488, 762, 774, 918, 993, 1232
AjnI	CCWGG	2 cut(s)	420, 1203
AjuI	GAANNNNNNNTTGG	6 cut(s)	96, 128, 268, 300, 1051, 1083
AloI	GAACNNNNNNTCC	2 cut(s)	1116, 1148
AluBI	AGCT	4 cut(s)	50, 462, 876, 1020
AluI	AGCT	4 cut(s)	50, 462, 876, 1020
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	1215
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	1100
Ama87I	CYCGRG	2 cut(s)	337, 1120
AoxI	GGCC	2 cut(s)	171, 793
ApeKI	GCWGC	1 cut(s)	801
ApoI	RAATTY	7 cut(s)	16, 104, 230, 343, 619, 974, 1126
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AspS9I	GGNCC	3 cut(s)	546, 767, 793
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	898, 959, 975
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	2 cut(s)	337, 1120
AvaII	GGWCC	2 cut(s)	546, 767
AxyI	CCTNAGG	1 cut(s)	1028
BaeGI	GKGCMC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	173
BanII	GRGCYC	3 cut(s)	52, 209, 957
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	813
BccI	CCATC	2 cut(s)	716, 944
BceAI	ACGGC	1 cut(s)	549
BcgI	CGANNNNNNTGC	2 cut(s)	582, 616
BciT130I	CCWGG	2 cut(s)	422, 1205
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	1215
BfaI	CTAG	2 cut(s)	219, 1173
BfmI	CTRYAG	4 cut(s)	291, 516, 1074, 1261
BfuAI	ACCTGC	1 cut(s)	509
BisI	GCNGC	1 cut(s)	802
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	803
Bme1390I	CCNGG	3 cut(s)	36, 422, 1205
Bme18I	GGWCC	2 cut(s)	546, 767
BmeT110I	CYCGRG	2 cut(s)	337, 1120
BmgT120I	GGNCC	3 cut(s)	546, 767, 793
BmiI	GGNNCC	3 cut(s)	208, 419, 1202
BmrFI	CCNGG	3 cut(s)	36, 422, 1205
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	614
BmuI	ACTGGG	1 cut(s)	206
Bpu1102I	GCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	35, 549
Bse1I	ACTGG	3 cut(s)	212, 304, 1087
Bse21I	CCTNAGG	1 cut(s)	1028
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	422, 1205
BseDI	CCNNGG	2 cut(s)	35, 549
BseGI	GGATG	5 cut(s)	367, 394, 674, 1150, 1177
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	65, 1226
BseNI	ACTGG	3 cut(s)	212, 304, 1087
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	1 cut(s)	813
BshFI	GGCC	2 cut(s)	173, 795
BsiHKAI	GWGCWC	1 cut(s)	52
BsiHKCI	CYCGRG	2 cut(s)	337, 1120
BsiSI	CCGG	2 cut(s)	35, 498
BslFI	GGGAC	2 cut(s)	347, 1130
BsmAI	GTCTC	1 cut(s)	1215
BsmFI	GGGAC	2 cut(s)	347, 1130
BsnI	GGCC	2 cut(s)	173, 795
BsoBI	CYCGRG	2 cut(s)	337, 1120
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	4 cut(s)	52, 209, 863, 957
Bsp143I	GATC	1 cut(s)	63
Bsp1720I	GCTNAGC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	2 cut(s)	331, 1114
BspANI	GGCC	2 cut(s)	173, 795
BspCNI	CTCAG	2 cut(s)	64, 1225
BspLI	GGNNCC	3 cut(s)	208, 419, 1202
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	3 cut(s)	212, 304, 1087
BssECI	CCNNGG	2 cut(s)	35, 549
BssMI	GATC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	422, 1205
Bst4CI	ACNGT	1 cut(s)	1096
Bst6I	CTCTTC	1 cut(s)	994
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	5 cut(s)	51, 872, 1028, 1212, 1269
BstDSI	CCRYGG	1 cut(s)	549
BstEII	GGTNACC	1 cut(s)	521
BstF5I	GGATG	5 cut(s)	367, 394, 674, 1150, 1177
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	1215
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 459, 658, 801
BstNI	CCWGG	2 cut(s)	422, 1205
BstPI	GGTNACC	1 cut(s)	521
BstSCI	CCNGG	3 cut(s)	34, 420, 1203
BstSFI	CTRYAG	4 cut(s)	291, 516, 1074, 1261
BstSLI	GKGCMC	1 cut(s)	863
BstV1I	GCAGC	1 cut(s)	813
Bsu36I	CCTNAGG	1 cut(s)	1028
BsuRI	GGCC	2 cut(s)	173, 795
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	5 cut(s)	367, 394, 674, 1150, 1177
BtsIMutI	CAGTG	1 cut(s)	619
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	1100
Cfr13I	GGNCC	3 cut(s)	546, 767, 793
CseI	GACGC	1 cut(s)	830
CspCI	CAANNNNNGTGG	2 cut(s)	685, 720
CviAII	CATG	6 cut(s)	169, 178, 550, 624, 699, 912
DdeI	CTNAG	5 cut(s)	51, 872, 1028, 1212, 1269
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DrdI	GACNNNNNNGTC	1 cut(s)	1264
DseDI	GACNNNNNNGTC	1 cut(s)	1264
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	994
EarI	CTCTTC	1 cut(s)	994
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	3 cut(s)	52, 209, 957
Eco47I	GGWCC	2 cut(s)	546, 767
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	731, 849
Eco81I	CCTNAGG	1 cut(s)	1028
Eco88I	CYCGRG	2 cut(s)	337, 1120
Eco91I	GGTNACC	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	793
EcoO65I	GGTNACC	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	420, 1203
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	3 cut(s)	52, 209, 957
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	6 cut(s)	172, 181, 553, 627, 702, 915
FaqI	GGGAC	2 cut(s)	347, 1130
FatI	CATG	6 cut(s)	168, 177, 549, 623, 698, 911
FauI	CCCGC	2 cut(s)	324, 1107
Fnu4HI	GCNGC	1 cut(s)	802
FokI	GGATG	5 cut(s)	374, 381, 661, 1157, 1164
FriOI	GRGCYC	3 cut(s)	52, 209, 957
Fsp4HI	GCNGC	1 cut(s)	802
FspBI	CTAG	2 cut(s)	219, 1173
GluI	GCNGC	1 cut(s)	802
HaeIII	GGCC	2 cut(s)	173, 795
HapII	CCGG	2 cut(s)	35, 498
HgaI	GACGC	1 cut(s)	830
Hin1II	CATG	6 cut(s)	172, 181, 553, 627, 702, 915
HinfI	GANTC	4 cut(s)	335, 508, 1118, 1208
HpaII	CCGG	2 cut(s)	35, 498
HphI	GGTGA	3 cut(s)	898, 959, 975
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	103, 226, 750, 832
Hpy188III	TCNNGA	7 cut(s)	134, 339, 431, 485, 993, 1122, 1214
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	781
HpyAV	CCTTC	6 cut(s)	428, 550, 578, 780, 873, 1211
HpyCH4III	ACNGT	1 cut(s)	1096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 459, 658, 801
HpyF3I	CTNAG	5 cut(s)	51, 872, 1028, 1212, 1269
Hsp92II	CATG	6 cut(s)	172, 181, 553, 627, 702, 915
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	4 cut(s)	47, 212, 467, 881
Lsp1109I	GCAGC	1 cut(s)	813
LweI	GCATC	1 cut(s)	614
MaeI	CTAG	2 cut(s)	219, 1173
MaeIII	GTNAC	8 cut(s)	139, 472, 521, 595, 818, 904, 1096, 1255
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	737, 981
MhlI	GDGCHC	4 cut(s)	52, 209, 863, 957
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	3 cut(s)	329, 1112, 1217
MmeI	TCCRAC	4 cut(s)	422, 489, 1205, 1272
MnlI	CCTC	6 cut(s)	141, 749, 784, 919, 997, 1000
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	2 cut(s)	35, 498
MspR9I	CCNGG	3 cut(s)	36, 422, 1205
MvaI	CCWGG	2 cut(s)	422, 1205
MwoI	GCNNNNNNNGC	4 cut(s)	317, 459, 658, 801
NciI	CCSGG	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	6 cut(s)	172, 181, 553, 627, 702, 915
NlaIV	GGNNCC	3 cut(s)	208, 419, 1202
NmuCI	GTSAC	6 cut(s)	139, 472, 595, 818, 904, 1255
NspV	TTCGAA	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	508
PkrI	GCNGC	1 cut(s)	803
PleI	GAGTC	3 cut(s)	329, 1112, 1216
PpsI	GAGTC	3 cut(s)	329, 1112, 1216
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	420, 1203
PspEI	GGTNACC	1 cut(s)	521
PspGI	CCWGG	2 cut(s)	420, 1203
PspN4I	GGNNCC	3 cut(s)	208, 419, 1202
PspPI	GGNCC	3 cut(s)	546, 767, 793
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	1100
SacI	GAGCTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	1 cut(s)	802
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	3 cut(s)	546, 767, 793
SchI	GAGTC	3 cut(s)	329, 1112, 1217
ScrFI	CCNGG	3 cut(s)	36, 422, 1205
SduI	GDGCHC	4 cut(s)	52, 209, 863, 957
SfaNI	GCATC	1 cut(s)	614
SfcI	CTRYAG	4 cut(s)	291, 516, 1074, 1261
SfuI	TTCGAA	1 cut(s)	13
SinI	GGWCC	2 cut(s)	546, 767
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
SsiI	CCGC	2 cut(s)	331, 1114
SspMI	CTAG	2 cut(s)	219, 1173
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	3 cut(s)	34, 420, 1203
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	1096
TaqI	TCGA	2 cut(s)	13, 66
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	6 cut(s)	139, 472, 595, 818, 904, 1255
TseI	GCWGC	1 cut(s)	801
Tsp45I	GTSAC	6 cut(s)	139, 472, 595, 818, 904, 1255
TspDTI	ATGAA	5 cut(s)	194, 455, 612, 655, 1238
TspGWI	ACGGA	1 cut(s)	1121
TspRI	CASTG	1 cut(s)	619
VpaK11BI	GGWCC	2 cut(s)	546, 767
XapI	RAATTY	7 cut(s)	16, 104, 230, 343, 619, 974, 1126
XcmI	CCANNNNNNNNNTGG	2 cut(s)	104, 540
XspI	CTAG	2 cut(s)	219, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.