Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Reverse (-)

18526974 .. 18530368

Gene Structure 3395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGAGGTTGGAATCTCATTCATTTCATAGGCTTCATATTGTTGTCTGTTCTCCTCTTGTCGGAAACCTGCCTGGCTAGTGTTAGAAATTTTGGGAAAATTAGGCCGGGGTTTCAAGGGACTCAGATGAATTGGATTGACAATGATGGGCTGTTTCTCTTGTCTAATCAATCCGATTTTGCTTTTGGCTTCGTCACTACTCCTCAAGATGTCACTTTGTTCCTGCTTTGTATTGTCCACATGGACGGCATGAAAATAGTATGGACTGCAAATAGGGGTTCCCCAGTTTCTAATTCTGATAAATTTGTGTTTGATGATAAGGGTAGTGTGTCGTTGCAAAAAGGTGGAAGTGTGGTTTGGTCTATAGATACTGGTGGCAAATCAGTTTCTGCAATGGAATTGAAGGACTCGGGAAATTTGGTTTTGCTTGGGGATGACAATGGAGTAGTTTGGCAGAGTTTCAGTCATCCAACTGATACTCTATTATGGAACCAGGAGTTTCAGGAAGGAATGAAACTTCAAAGCGAACCAAGCTCCAACAATGTGACCTATATTCTAGAAATCAAGTCCGGCGACTTGATTCTTTCTGCAGGTTTCCAAACACCACAGCCTTATTGGTCCATGGGGAAGGAAAGCCGTAAAACAATCAACACAGATGGTGGGGCAGTCACTTCAGCATCTATCAGTGCAAATTCATGGAAGTTCTATGATAGTTCTAAAGTGCTACTATGGCAATTTATTTTCTCATCCAATGTTGATGTTAATGCCACATGGACTGCAGTTTTGGGAAATGATGGGGTTATTTCTTTTTCCAATCTTCAGAATGGAGATTCAAATGGTCCTTCAACAACGAAAATACCAGGGGACTCATGCAGCACCCCCGAACCTTGTGATGCATATTTTGAATGTTCCAGCAACAACAAGTGCCAGTGCCCTTCAGGTCTCAGCTCCCATGAGAATTGCAAGTCGGGGATTGTCACCTCATGTTCAAAGGGTTCTACAACGCTTACAAGTGCCGGTGATGGGCTCTATTATTTTGCATTGGGATTTGTTTCACCCTCTTCAAGAACTGACTTGGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

361

Amino Acids

38.94

Weight (kDa)

4.7

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	86 - 169	3.1e-16	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	77, 581
AcsI	RAATTY	4 cut(s)	88, 302, 415, 691
AcuI	CTGAAG	3 cut(s)	657, 803, 921
AfiI	CCNNNNNNNGG	2 cut(s)	61, 1023
AgsI	TTSAA	8 cut(s)	116, 403, 521, 834, 846, 905, 990, 1065
AjnI	CCWGG	3 cut(s)	72, 492, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	340, 372
AluBI	AGCT	2 cut(s)	534, 948
AluI	AGCT	2 cut(s)	534, 948
Alw26I	GTCTC	1 cut(s)	947
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	873
ApoI	RAATTY	4 cut(s)	88, 302, 415, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	766, 798
AspS9I	GGNCC	2 cut(s)	618, 839
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	970, 1031, 1047
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	618, 839
BaeGI	GKGCMC	1 cut(s)	935
BanII	GRGCYC	1 cut(s)	1029
BbvI	GCAGC	1 cut(s)	885
BccI	CCATC	4 cut(s)	140, 650, 788, 1016
BceAI	ACGGC	2 cut(s)	262, 621
BciT130I	CCWGG	3 cut(s)	74, 494, 861
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	947
BfaI	CTAG	2 cut(s)	78, 557
BfmI	CTRYAG	3 cut(s)	363, 588, 777
BfuAI	ACCTGC	2 cut(s)	77, 581
BisI	GCNGC	1 cut(s)	874
BlsI	GCNGC	1 cut(s)	875
Bme1390I	CCNGG	4 cut(s)	74, 108, 494, 861
Bme18I	GGWCC	2 cut(s)	618, 839
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	618, 839
BmiI	GGNNCC	2 cut(s)	280, 491
BmrFI	CCNGG	4 cut(s)	74, 108, 494, 861
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	686, 883
BmuI	ACTGGG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	3 cut(s)	107, 621, 860
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 1023
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	3 cut(s)	284, 376, 928
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	74, 494, 861
BseDI	CCNNGG	3 cut(s)	107, 621, 860
BseGI	GGATG	3 cut(s)	439, 466, 746
BseLI	CCNNNNNNNGG	2 cut(s)	61, 1023
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	137, 958
BseNI	ACTGG	3 cut(s)	284, 376, 928
BseRI	GAGGAG	2 cut(s)	44, 192
BseSI	GKGCMC	1 cut(s)	935
BseXI	GCAGC	1 cut(s)	885
BshFI	GGCC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	3 cut(s)	107, 570, 1017
BslFI	GGGAC	2 cut(s)	133, 878
BslI	CCNNNNNNNGG	2 cut(s)	61, 1023
BsmAI	GTCTC	1 cut(s)	947
BsmFI	GGGAC	2 cut(s)	133, 878
BsnI	GGCC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	947
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	935, 1029
Bsp19I	CCATGG	1 cut(s)	621
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	136, 957
BspLI	GGNNCC	2 cut(s)	280, 491
BspMAI	CTGCAG	2 cut(s)	592, 781
BspMI	ACCTGC	2 cut(s)	77, 581
BspTNI	GGTCTC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	1016
BsrI	ACTGG	3 cut(s)	284, 376, 928
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	3 cut(s)	107, 621, 860
BssT1I	CCWWGG	1 cut(s)	621
Bst2UI	CCWGG	3 cut(s)	74, 494, 861
Bst6I	CTCTTC	1 cut(s)	1066
BstDEI	CTNAG	2 cut(s)	123, 944
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	439, 466, 746
BstMAI	GTCTC	1 cut(s)	947
BstMWI	GCNNNNNNNGC	2 cut(s)	531, 730
BstNI	CCWGG	3 cut(s)	74, 494, 861
BstSCI	CCNGG	4 cut(s)	72, 106, 492, 859
BstSFI	CTRYAG	3 cut(s)	363, 588, 777
BstSLI	GKGCMC	1 cut(s)	935
BstV1I	GCAGC	1 cut(s)	885
BsuRI	GGCC	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	3 cut(s)	439, 466, 746
BtsIMutI	CAGTG	2 cut(s)	691, 935
BveI	ACCTGC	2 cut(s)	77, 581
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	1016
Cfr13I	GGNCC	2 cut(s)	618, 839
CviAII	CATG	8 cut(s)	241, 250, 622, 696, 771, 870, 953, 984
DdeI	CTNAG	2 cut(s)	123, 944
Eam1104I	CTCTTC	1 cut(s)	1066
EarI	CTCTTC	1 cut(s)	1066
Eco130I	CCWWGG	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	1029
Eco31I	GGTCTC	1 cut(s)	947
Eco47I	GGWCC	2 cut(s)	618, 839
Eco57I	CTGAAG	3 cut(s)	657, 803, 921
Eco88I	CYCGRG	1 cut(s)	409
EcoRII	CCWGG	3 cut(s)	72, 492, 859
EcoT14I	CCWWGG	1 cut(s)	621
EcoT22I	ATGCAT	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	1029
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	8 cut(s)	244, 253, 625, 699, 774, 873, 956, 987
FaqI	GGGAC	2 cut(s)	133, 878
FatI	CATG	8 cut(s)	240, 249, 621, 695, 770, 869, 952, 983
Fnu4HI	GCNGC	1 cut(s)	874
FokI	GGATG	3 cut(s)	446, 453, 733
FriOI	GRGCYC	1 cut(s)	1029
Fsp4HI	GCNGC	1 cut(s)	874
FspBI	CTAG	2 cut(s)	78, 557
GluI	GCNGC	1 cut(s)	874
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	3 cut(s)	107, 570, 1017
Hin1II	CATG	8 cut(s)	244, 253, 625, 699, 774, 873, 956, 987
HinfI	GANTC	6 cut(s)	13, 121, 407, 580, 830, 866
HpaII	CCGG	3 cut(s)	107, 570, 1017
HphI	GGTGA	3 cut(s)	970, 1031, 1047
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	5 cut(s)	64, 126, 175, 298, 822
Hpy188III	TCNNGA	5 cut(s)	206, 411, 503, 557, 1065
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	6 cut(s)	397, 500, 622, 852, 945, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	531, 730
HpyF3I	CTNAG	2 cut(s)	123, 944
Hsp92II	CATG	8 cut(s)	244, 253, 625, 699, 774, 873, 956, 987
LmnI	GCTCC	2 cut(s)	539, 953
Lsp1109I	GCAGC	1 cut(s)	885
LweI	GCATC	2 cut(s)	686, 883
MaeI	CTAG	2 cut(s)	78, 557
MaeIII	GTNAC	5 cut(s)	193, 211, 544, 667, 976
MboII	GAAGA	2 cut(s)	809, 1053
MhlI	GDGCHC	2 cut(s)	935, 1029
MlyI	GAGTC	3 cut(s)	115, 401, 860
MmeI	TCCRAC	3 cut(s)	42, 494, 561
MnlI	CCTC	4 cut(s)	65, 213, 991, 1069
Mph1103I	ATGCAT	1 cut(s)	898
MseI	TTAA	1 cut(s)	762
MspI	CCGG	3 cut(s)	107, 570, 1017
MspR9I	CCNGG	4 cut(s)	74, 108, 494, 861
MvaI	CCWGG	3 cut(s)	74, 494, 861
MwoI	GCNNNNNNNGC	2 cut(s)	531, 730
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	621
NlaIII	CATG	8 cut(s)	244, 253, 625, 699, 774, 873, 956, 987
NlaIV	GGNNCC	2 cut(s)	280, 491
NmuCI	GTSAC	5 cut(s)	193, 211, 544, 667, 976
NsiI	ATGCAT	1 cut(s)	898
PfeI	GAWTC	3 cut(s)	13, 580, 830
PkrI	GCNGC	1 cut(s)	875
PleI	GAGTC	3 cut(s)	115, 401, 860
PpsI	GAGTC	3 cut(s)	115, 401, 860
Psp6I	CCWGG	3 cut(s)	72, 492, 859
PspGI	CCWGG	3 cut(s)	72, 492, 859
PspN4I	GGNNCC	2 cut(s)	280, 491
PspPI	GGNCC	2 cut(s)	618, 839
PstI	CTGCAG	2 cut(s)	592, 781
PstNI	CAGNNNCTG	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	1 cut(s)	874
Sau96I	GGNCC	2 cut(s)	618, 839
SchI	GAGTC	3 cut(s)	115, 401, 860
ScrFI	CCNGG	4 cut(s)	74, 108, 494, 861
SduI	GDGCHC	2 cut(s)	935, 1029
SfaNI	GCATC	2 cut(s)	686, 883
SfcI	CTRYAG	3 cut(s)	363, 588, 777
SinI	GGWCC	2 cut(s)	618, 839
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
SspMI	CTAG	2 cut(s)	78, 557
StyD4I	CCNGG	4 cut(s)	72, 106, 492, 859
StyI	CCWWGG	1 cut(s)	621
TfiI	GAWTC	3 cut(s)	13, 580, 830
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TscAI	CASTG	2 cut(s)	691, 935
TseFI	GTSAC	5 cut(s)	193, 211, 544, 667, 976
TseI	GCWGC	1 cut(s)	873
Tsp45I	GTSAC	5 cut(s)	193, 211, 544, 667, 976
TspDTI	ATGAA	7 cut(s)	11, 16, 25, 143, 266, 527, 684
TspRI	CASTG	2 cut(s)	691, 935
VpaK11BI	GGWCC	2 cut(s)	618, 839
XapI	RAATTY	4 cut(s)	88, 302, 415, 691
XbaI	TCTAGA	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XspI	CTAG	2 cut(s)	78, 557
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.