Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Reverse (-)

10463564 .. 10464869

Gene Structure 1306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGAGGTTGGAACTTCATTCATTTCACAGGCTTCATACTTGTGTCTGTTCTCCTTTTGTCTGAAACCTGCCTGGCTAGTGTTCGATATTTTGGGAAAATTAGTCCCGGGTTTCAAGAAACTCGGCAGGAGGATTGGATTGATAATGATGGGTTGTTTCCCTTGTCGAACTCAGCTGAATTTGGTTTTGGCTTCTACCCTACTCCCCAGGATGTTACATTGCTTCTGCTAGTTGTGATTCACATGAACACTCATGCAGTAGTATGGGCTGCAAATAGGGATACTGGTGGCAAAACAGCTACTGCAATGGAATTGCGGGACTCAGGAAATTTGGTTTTGCTTGGTGATGACAATGGAGTAGTTTGGCAGAGTTTTAGTCATCCAACTAATACCCTGTTATGGAACCAGGATTTTCAAGAAGGAATGAAACTTGTGAGCGATCCAAGCTCCAACAACGTGAGCTATATTCTCGAAATCAAGTTCGGTGACATGATTCTTTCTTCAGGTTTCCAAACACCACAGCCTTATTGGTCTTTGGGGAACGAAAGCCGTAAAACAATCAACAAAGAAGGTGGGGAAGTCACTTCAGCATCTATTAGTGCAAATTCTTGGAAGTTCTATGATCAAAGGAAAGTGCTACTTCGGCAGTTTATTTTCTCGGACAATGCTGATGCAAATGCCTCATGGATTGCAGTTTTGGGAAATGATGGAGTTATTTCTTTCTTCAATCTTCAGAATGGAGGTCCAAGTGGTCCTTCTCCTTCCACAACAAAAATACCTGGCGGAGACTCATGCAGCACCCTGGAAGCTTGTGCTCCATATTTTGAATGTTTGAGTGACAACTCCTGCCAGTGCCCTTCAGGTCTTAGCTCCCGTTCTAATTGTACGACGGGGATTGTCTCTTCATGTGATCCTTCAGAGGGTTCCATAGAGCTTATAAATACTGGTGATGGGCTCTATTATATTCCGCTGGGATTTGTTTCACCCTCTTCGAAAACTGATTTGGATGGTTGCCAAAAATCTTGCATTGGCAACTGTTCATGTGTTGCTTTGTTCTTCCAAAACAGTACAAGAAATTGTTACTGTTTGACAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr

Protein Analysis

366

Amino Acids

39.56

Weight (kDa)

4.56

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	79 - 138	2.6e-11	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	938
Acc36I	ACCTGC	1 cut(s)	77
AciI	CCGC	3 cut(s)	316, 783, 968
AclWI	GGATC	2 cut(s)	434, 905
AcsI	RAATTY	3 cut(s)	179, 328, 604
AcuI	CTGAAG	5 cut(s)	486, 570, 716, 843, 900
AfaI	GTAC	2 cut(s)	886, 1069
AfiI	CCNNNNNNNGG	2 cut(s)	399, 920
AgsI	TTSAA	4 cut(s)	116, 416, 727, 827
AjnI	CCWGG	5 cut(s)	72, 207, 405, 778, 801
AjuI	GAANNNNNNNTTGG	6 cut(s)	171, 203, 739, 771, 986, 1018
AluBI	AGCT	7 cut(s)	176, 299, 447, 462, 809, 870, 934
AluI	AGCT	7 cut(s)	176, 299, 447, 462, 809, 870, 934
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	2 cut(s)	780, 904
AlwI	GGATC	2 cut(s)	434, 905
AlwNI	CAGNNNCTG	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	269, 795
ApoI	RAATTY	3 cut(s)	179, 328, 604
AspS9I	GGNCC	2 cut(s)	743, 752
AsuC2I	CCSGG	2 cut(s)	108, 109
AsuHPI	GGTGA	4 cut(s)	356, 497, 959, 975
AsuII	TTCGAA	1 cut(s)	992
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	743, 752
BaeGI	GKGCMC	1 cut(s)	857
BanII	GRGCYC	1 cut(s)	957
Bbv12I	GWGCWC	1 cut(s)	817
BbvI	GCAGC	2 cut(s)	256, 807
BccI	CCATC	4 cut(s)	143, 701, 944, 1001
BceAI	ACGGC	1 cut(s)	534
BciT130I	CCWGG	5 cut(s)	74, 209, 407, 780, 803
BciVI	GTATCC	1 cut(s)	274
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	2 cut(s)	108, 109
BcoDI	GTCTC	2 cut(s)	780, 904
BfaI	CTAG	2 cut(s)	78, 230
BfuAI	ACCTGC	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	274
BisI	GCNGC	2 cut(s)	270, 796
BlsI	GCNGC	2 cut(s)	271, 797
Bme1390I	CCNGG	7 cut(s)	74, 108, 109, 209, 407, 780, 803
Bme18I	GGWCC	2 cut(s)	743, 752
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	743, 752
BmiI	GGNNCC	2 cut(s)	404, 925
BmrFI	CCNGG	7 cut(s)	74, 108, 109, 209, 407, 780, 803
BmsI	GCATC	2 cut(s)	599, 661
Bpu14I	TTCGAA	1 cut(s)	992
BpuMI	CCSGG	2 cut(s)	108, 109
BsaJI	CCNNGG	3 cut(s)	107, 207, 801
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 920
Bse1I	ACTGG	3 cut(s)	289, 850, 949
Bse3DI	GCAATG	2 cut(s)	218, 312
BseBI	CCWGG	5 cut(s)	74, 209, 407, 780, 803
BseDI	CCNNGG	3 cut(s)	107, 207, 801
BseGI	GGATG	3 cut(s)	217, 379, 1012
BseLI	CCNNNNNNNGG	2 cut(s)	399, 920
BseMI	GCAATG	2 cut(s)	218, 312
BseMII	CTCAG	2 cut(s)	186, 336
BseNI	ACTGG	3 cut(s)	289, 850, 949
BseSI	GKGCMC	1 cut(s)	857
BseXI	GCAGC	2 cut(s)	256, 807
BseYI	CCCAGC	1 cut(s)	970
BsiHKAI	GWGCWC	1 cut(s)	817
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	90, 332
BslI	CCNNNNNNNGG	2 cut(s)	399, 920
BsmAI	GTCTC	2 cut(s)	780, 904
BsmFI	GGGAC	2 cut(s)	90, 332
BsoBI	CYCGRG	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	992
Bsp1286I	GDGCHC	3 cut(s)	817, 857, 957
Bsp143I	GATC	3 cut(s)	439, 622, 910
BspACI	CCGC	3 cut(s)	316, 783, 968
BspCNI	CTCAG	2 cut(s)	185, 335
BspLI	GGNNCC	2 cut(s)	404, 925
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	434, 905
BspT104I	TTCGAA	1 cut(s)	992
BsrDI	GCAATG	2 cut(s)	218, 312
BsrI	ACTGG	3 cut(s)	289, 850, 949
BssECI	CCNNGG	3 cut(s)	107, 207, 801
BssMI	GATC	3 cut(s)	439, 622, 910
Bst2UI	CCWGG	5 cut(s)	74, 209, 407, 780, 803
Bst4CI	ACNGT	3 cut(s)	1037, 1067, 1085
Bst6I	CTCTTC	2 cut(s)	907, 994
BstBI	TTCGAA	1 cut(s)	992
BstDEI	CTNAG	3 cut(s)	172, 322, 866
BstF5I	GGATG	3 cut(s)	217, 379, 1012
BstKTI	GATC	3 cut(s)	442, 625, 913
BstMAI	GTCTC	2 cut(s)	780, 904
BstMBI	GATC	3 cut(s)	439, 622, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	444, 643
BstNI	CCWGG	5 cut(s)	74, 209, 407, 780, 803
BstSCI	CCNGG	7 cut(s)	72, 106, 107, 207, 405, 778, 801
BstSLI	GKGCMC	1 cut(s)	857
BstV1I	GCAGC	2 cut(s)	256, 807
BsuI	GTATCC	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	217, 379, 1012
BtsIMutI	CAGTG	1 cut(s)	857
BveI	ACCTGC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	743, 752
Cfr9I	CCCGGG	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	885, 1068
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	7 cut(s)	244, 254, 490, 684, 792, 906, 1041
CviQI	GTAC	2 cut(s)	885, 1068
DdeI	CTNAG	3 cut(s)	172, 322, 866
DpnI	GATC	3 cut(s)	441, 624, 912
DpnII	GATC	3 cut(s)	439, 622, 910
Eam1104I	CTCTTC	2 cut(s)	907, 994
EarI	CTCTTC	2 cut(s)	907, 994
EciI	GGCGGA	1 cut(s)	798
Eco24I	GRGCYC	1 cut(s)	957
Eco47I	GGWCC	2 cut(s)	743, 752
Eco57I	CTGAAG	5 cut(s)	486, 570, 716, 843, 900
Eco88I	CYCGRG	1 cut(s)	107
EcoRII	CCWGG	5 cut(s)	72, 207, 405, 778, 801
EcoT38I	GRGCYC	1 cut(s)	957
FaeI	CATG	7 cut(s)	247, 257, 493, 687, 795, 909, 1044
FalI	AAGNNNNNCTT	4 cut(s)	624, 656, 739, 771
FaqI	GGGAC	2 cut(s)	90, 332
FatI	CATG	7 cut(s)	243, 253, 489, 683, 791, 905, 1040
FauI	CCCGC	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	270, 796
FokI	GGATG	3 cut(s)	224, 366, 1019
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	2 cut(s)	270, 796
FspBI	CTAG	2 cut(s)	78, 230
GluI	GCNGC	2 cut(s)	270, 796
GsaI	CCCAGC	1 cut(s)	974
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	7 cut(s)	247, 257, 493, 687, 795, 909, 1044
HindIII	AAGCTT	1 cut(s)	807
HinfI	GANTC	4 cut(s)	238, 320, 493, 788
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	4 cut(s)	356, 497, 959, 975
Hpy188I	TCNGA	4 cut(s)	64, 661, 735, 919
Hpy188III	TCNNGA	4 cut(s)	116, 324, 416, 470
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	6 cut(s)	413, 563, 765, 771, 867, 924
HpyCH4III	ACNGT	3 cut(s)	1037, 1067, 1085
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	8 cut(s)	257, 272, 305, 602, 674, 692, 795, 1026
HpyF10VI	GCNNNNNNNGC	2 cut(s)	444, 643
HpyF3I	CTNAG	3 cut(s)	172, 322, 866
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	7 cut(s)	247, 257, 493, 687, 795, 909, 1044
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	439, 622, 910
LmnI	GCTCC	3 cut(s)	452, 820, 875
Lsp1109I	GCAGC	2 cut(s)	256, 807
LweI	GCATC	2 cut(s)	599, 661
MaeI	CTAG	2 cut(s)	78, 230
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	5 cut(s)	214, 485, 580, 836, 1079
MalI	GATC	3 cut(s)	441, 624, 912
MboI	GATC	3 cut(s)	439, 622, 910
MboII	GAAGA	6 cut(s)	492, 715, 722, 894, 981, 1048
MhlI	GDGCHC	3 cut(s)	817, 857, 957
MluCI	AATT	7 cut(s)	99, 179, 311, 328, 604, 880, 1075
MlyI	GAGTC	2 cut(s)	314, 782
MmeI	TCCRAC	2 cut(s)	407, 474
MnlI	CCTC	5 cut(s)	124, 691, 734, 913, 997
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	176, 970
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	7 cut(s)	74, 108, 109, 209, 407, 780, 803
MvaI	CCWGG	5 cut(s)	74, 209, 407, 780, 803
MwoI	GCNNNNNNNGC	2 cut(s)	444, 643
NciI	CCSGG	2 cut(s)	108, 109
NdeII	GATC	3 cut(s)	439, 622, 910
NlaIII	CATG	7 cut(s)	247, 257, 493, 687, 795, 909, 1044
NlaIV	GGNNCC	2 cut(s)	404, 925
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	3 cut(s)	485, 580, 836
NspV	TTCGAA	1 cut(s)	992
PfeI	GAWTC	2 cut(s)	238, 493
PkrI	GCNGC	2 cut(s)	271, 797
PleI	GAGTC	2 cut(s)	314, 782
PpsI	GAGTC	2 cut(s)	314, 782
PsiI	TTATAA	1 cut(s)	938
Psp6I	CCWGG	5 cut(s)	72, 207, 405, 778, 801
PspFI	CCCAGC	1 cut(s)	970
PspGI	CCWGG	5 cut(s)	72, 207, 405, 778, 801
PspN4I	GGNNCC	2 cut(s)	404, 925
PspPI	GGNCC	2 cut(s)	743, 752
PstNI	CAGNNNCTG	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	886, 1069
RsaNI	GTAC	2 cut(s)	885, 1068
RseI	CAYNNNNRTG	1 cut(s)	41
SatI	GCNGC	2 cut(s)	270, 796
Sau3AI	GATC	3 cut(s)	439, 622, 910
Sau96I	GGNCC	2 cut(s)	743, 752
SchI	GAGTC	2 cut(s)	314, 782
ScrFI	CCNGG	7 cut(s)	74, 108, 109, 209, 407, 780, 803
SduI	GDGCHC	3 cut(s)	817, 857, 957
SfaNI	GCATC	2 cut(s)	599, 661
SfuI	TTCGAA	1 cut(s)	992
SinI	GGWCC	2 cut(s)	743, 752
SmaI	CCCGGG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	7 cut(s)	99, 179, 311, 328, 604, 880, 1075
SsiI	CCGC	3 cut(s)	316, 783, 968
SspMI	CTAG	2 cut(s)	78, 230
StyD4I	CCNGG	7 cut(s)	72, 106, 107, 207, 405, 778, 801
TaaI	ACNGT	3 cut(s)	1037, 1067, 1085
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	4 cut(s)	85, 167, 471, 992
TasI	AATT	7 cut(s)	99, 179, 311, 328, 604, 880, 1075
TatI	WGTACW	1 cut(s)	1067
TfiI	GAWTC	2 cut(s)	238, 493
TscAI	CASTG	1 cut(s)	857
TseFI	GTSAC	3 cut(s)	485, 580, 836
TseI	GCWGC	2 cut(s)	269, 795
Tsp45I	GTSAC	3 cut(s)	485, 580, 836
TspDTI	ATGAA	7 cut(s)	7, 11, 25, 260, 440, 894, 1029
TspMI	CCCGGG	1 cut(s)	107
TspRI	CASTG	1 cut(s)	857
VpaK11BI	GGWCC	2 cut(s)	743, 752
XapI	RAATTY	3 cut(s)	179, 328, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmaI	CCCGGG	1 cut(s)	107
XspI	CTAG	2 cut(s)	78, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.