Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Forward (+)

8852647 .. 8855803

Gene Structure 3157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1122800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTGGGTTGTTTCTCTTATCTAACCAGTTCGAATTTTGGCTTCAAAAGATTCAAAATTAGTCCCCAAGATCGATTATTTCTGCTTTTTATTGTTCACATGGACAGTTTGAGGGTAGGTTGGACCGGGAGTAGGGGTTCCCCGGTTTTAAATCCTGATAAATTTGTGTTTAATGCTAAGAGGGGTGTGTTCTTGCAAAGCGACGGAAGTGTGGTTTGGTCTGCAGATACTGGTGGTGACGAATCGAAGCTGGGTGTAAGCACACCCAACTCCGGCGATCCCGAGGGTGTCGGGGCTTTTTCCGACCATCTCCGACCGTTCCACGACGAAATGAAGCACGTGATCATCCCGATGTCACGAGGACATCGGGATCGGGGCGTGTCAGGTGGCAAAAGAGGATTTGCAATAGAGTTGCAGGACTCTGGAAATTTGGATTTGCATGGTGATGACGGTGGAGTAGTTTGGCAGAGTTTTAGCCATCCAACTGATACCCTATTATGGAACCAGGAATTTTCAGAAGGAATGAAGCTGGTAAGCAATCCTAGCTCCAACAACTTGAGTTATATTCTCCAAATCAAGTATGGCGACTTAGTTCTTTCATCAGGTTACCAAACACCACAGCCGTATTGGTCTATGGCGAAAGAAATCCGTAAAACAATCAACAAAGACGGTGGTGTAGTCACTTCAACAACTATTAGTAAAAATTCATGGAAGTTCTTTGATCAATCCAAAGCGTTGCTATGGCAATTTATTTTCTCGAGCAATATTGATGCAAATGCCACATGGATTGCAGTTTTAGGAAGTGATGGATTTATCTCTTTCTACAGTCTTCAGAATAGAGGGTCAAGTGGTCCTTCAGGAACAAAAATACCAAGCGATTCGTGCAGCACACCAGAACCTTGTGATTCTTACTTGGAATGTTTTAGTAACAAGTGCCAGTGCCCTTCACGTCTCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

320

Amino Acids

35.11

Weight (kDa)

6.65

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	134 - 171	3.6e-07	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	272, 378
AcsI	RAATTY	5 cut(s)	34, 161, 427, 509, 703
AcuI	CTGAAG	2 cut(s)	815, 840
AcvI	CACGTG	1 cut(s)	340
AfiI	CCNNNNNNNGG	3 cut(s)	132, 272, 498
AgsI	TTSAA	3 cut(s)	46, 55, 687
AjiI	CACGTC	1 cut(s)	950
AjnI	CCWGG	1 cut(s)	504
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AloI	GAACNNNNNNTCC	2 cut(s)	121, 153
AluBI	AGCT	4 cut(s)	250, 529, 546, 957
AluI	AGCT	4 cut(s)	250, 529, 546, 957
Alw26I	GTCTC	1 cut(s)	956
AlwI	GGATC	2 cut(s)	272, 378
AlwNI	CAGNNNCTG	1 cut(s)	230
Ama87I	CYCGRG	2 cut(s)	281, 757
ApeKI	GCWGC	1 cut(s)	885
ApoI	RAATTY	5 cut(s)	34, 161, 427, 509, 703
AspS9I	GGNCC	2 cut(s)	123, 851
AsuC2I	CCSGG	2 cut(s)	127, 143
AsuHPI	GGTGA	2 cut(s)	248, 455
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	2 cut(s)	281, 757
AvaII	GGWCC	2 cut(s)	123, 851
BaeGI	GKGCMC	1 cut(s)	944
BauI	CACGAG	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	821
BbvI	GCAGC	1 cut(s)	897
BccI	CCATC	3 cut(s)	315, 486, 800
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	506
BclI	TGATCA	2 cut(s)	342, 721
BcnI	CCSGG	2 cut(s)	127, 143
BcoDI	GTCTC	1 cut(s)	956
BfaI	CTAG	2 cut(s)	543, 958
BfmI	CTRYAG	2 cut(s)	222, 823
BisI	GCNGC	1 cut(s)	886
BlsI	GCNGC	1 cut(s)	887
Bme1390I	CCNGG	3 cut(s)	127, 143, 506
Bme18I	GGWCC	2 cut(s)	123, 851
BmeT110I	CYCGRG	2 cut(s)	281, 757
BmgBI	CACGTC	1 cut(s)	950
BmgT120I	GGNCC	2 cut(s)	123, 851
BmiI	GGNNCC	2 cut(s)	139, 503
BmrFI	CCNGG	3 cut(s)	127, 143, 506
BmsI	GCATC	1 cut(s)	760
BpiI	GAAGAC	1 cut(s)	821
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	127, 143
Bsa29I	ATCGAT	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	141, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 272, 498
Bse1I	ACTGG	3 cut(s)	27, 235, 937
BseBI	CCWGG	1 cut(s)	506
BseCI	ATCGAT	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	141, 282
BseGI	GGATG	2 cut(s)	345, 478
BseLI	CCNNNNNNNGG	3 cut(s)	132, 272, 498
BseNI	ACTGG	3 cut(s)	27, 235, 937
BseSI	GKGCMC	1 cut(s)	944
BseXI	GCAGC	1 cut(s)	897
BseYI	CCCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	904
Bsh1285I	CGRYCG	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	73
BsiEI	CGRYCG	1 cut(s)	317
BsiHKCI	CYCGRG	2 cut(s)	281, 757
BsiSI	CCGG	3 cut(s)	126, 143, 273
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	3 cut(s)	132, 272, 498
BsmAI	GTCTC	1 cut(s)	956
BsmBI	CGTCTC	1 cut(s)	956
BsmFI	GGGAC	1 cut(s)	48
BsoBI	CYCGRG	2 cut(s)	281, 757
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	944
Bsp143I	GATC	5 cut(s)	70, 277, 342, 370, 721
BspDI	ATCGAT	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	139, 503
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	2 cut(s)	272, 378
BspT104I	TTCGAA	1 cut(s)	32
BsrI	ACTGG	3 cut(s)	27, 235, 937
BssECI	CCNNGG	2 cut(s)	141, 282
BssMI	GATC	5 cut(s)	70, 277, 342, 370, 721
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	5 cut(s)	107, 318, 452, 671, 827
BstBAI	YACGTR	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	32
BstDEI	CTNAG	3 cut(s)	177, 589, 953
BstEII	GGTNACC	1 cut(s)	605
BstF5I	GGATG	2 cut(s)	345, 478
BstKTI	GATC	5 cut(s)	73, 280, 345, 373, 724
BstMAI	GTCTC	1 cut(s)	956
BstMBI	GATC	5 cut(s)	70, 277, 342, 370, 721
BstMCI	CGRYCG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	2 cut(s)	543, 882
BstNI	CCWGG	1 cut(s)	506
BstPI	GGTNACC	1 cut(s)	605
BstSCI	CCNGG	3 cut(s)	125, 141, 504
BstSFI	CTRYAG	2 cut(s)	222, 823
BstSLI	GKGCMC	1 cut(s)	944
BstV1I	GCAGC	1 cut(s)	897
BstV2I	GAAGAC	1 cut(s)	821
Bsu15I	ATCGAT	1 cut(s)	73
BsuTUI	ATCGAT	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	950
BtsCI	GGATG	2 cut(s)	345, 478
BtsIMutI	CAGTG	1 cut(s)	944
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	123, 851
ClaI	ATCGAT	1 cut(s)	73
CspCI	CAANNNNNGTGG	4 cut(s)	652, 687, 769, 804
CviAII	CATG	4 cut(s)	100, 440, 708, 783
CviJI	RGCY	8 cut(s)	42, 250, 296, 477, 529, 546, 622, 957
CviKI_1	RGCY	8 cut(s)	42, 250, 296, 477, 529, 546, 622, 957
DdeI	CTNAG	3 cut(s)	177, 589, 953
DpnI	GATC	5 cut(s)	72, 279, 344, 372, 723
DpnII	GATC	5 cut(s)	70, 277, 342, 370, 721
DraI	TTTAAA	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	123, 851
Eco57I	CTGAAG	2 cut(s)	815, 840
Eco72I	CACGTG	1 cut(s)	340
Eco88I	CYCGRG	2 cut(s)	281, 757
Eco91I	GGTNACC	1 cut(s)	605
EcoO65I	GGTNACC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	956
FaeI	CATG	4 cut(s)	103, 443, 711, 786
FaiI	YATR	9 cut(s)	101, 441, 499, 564, 582, 635, 709, 742, 784
FalI	AAGNNNNNCTT	2 cut(s)	838, 870
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	4 cut(s)	99, 439, 707, 782
FbaI	TGATCA	2 cut(s)	342, 721
Fnu4HI	GCNGC	1 cut(s)	886
FokI	GGATG	2 cut(s)	332, 465
Fsp4HI	GCNGC	1 cut(s)	886
FspBI	CTAG	2 cut(s)	543, 958
GluI	GCNGC	1 cut(s)	886
GsaI	CCCAGC	1 cut(s)	254
HapII	CCGG	3 cut(s)	126, 143, 273
Hin1II	CATG	4 cut(s)	103, 443, 711, 786
HinfI	GANTC	5 cut(s)	51, 242, 419, 878, 905
HpaII	CCGG	3 cut(s)	126, 143, 273
HphI	GGTGA	2 cut(s)	248, 455
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	304, 314, 517, 834
Hpy188III	TCNNGA	8 cut(s)	155, 281, 349, 357, 368, 423, 757, 858
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	2 cut(s)	206, 329
HpyAV	CCTTC	3 cut(s)	512, 864, 954
HpyCH4III	ACNGT	5 cut(s)	107, 318, 452, 671, 827
HpyCH4IV	ACGT	2 cut(s)	339, 949
HpyCH4V	TGCA	8 cut(s)	196, 224, 404, 415, 439, 773, 791, 885
HpyF10VI	GCNNNNNNNGC	2 cut(s)	543, 882
HpyF3I	CTNAG	3 cut(s)	177, 589, 953
HpySE526I	ACGT	2 cut(s)	339, 949
Hsp92II	CATG	4 cut(s)	103, 443, 711, 786
Ksp22I	TGATCA	2 cut(s)	342, 721
Kzo9I	GATC	5 cut(s)	70, 277, 342, 370, 721
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	1 cut(s)	897
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	2 cut(s)	543, 958
MaeII	ACGT	2 cut(s)	339, 949
MaeIII	GTNAC	5 cut(s)	236, 354, 605, 679, 926
MalI	GATC	5 cut(s)	72, 279, 344, 372, 723
MboI	GATC	5 cut(s)	70, 277, 342, 370, 721
MboII	GAAGA	1 cut(s)	821
MhlI	GDGCHC	1 cut(s)	944
MluCI	AATT	7 cut(s)	34, 57, 161, 427, 509, 703, 746
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	5 cut(s)	101, 327, 337, 506, 573
MnlI	CCTC	6 cut(s)	105, 174, 277, 353, 389, 833
MseI	TTAA	2 cut(s)	149, 171
MslI	CAYNNNNRTG	2 cut(s)	350, 444
MspI	CCGG	3 cut(s)	126, 143, 273
MspR9I	CCNGG	3 cut(s)	127, 143, 506
MvaI	CCWGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	2 cut(s)	543, 882
NciI	CCSGG	2 cut(s)	127, 143
NdeII	GATC	5 cut(s)	70, 277, 342, 370, 721
NlaIII	CATG	4 cut(s)	103, 443, 711, 786
NlaIV	GGNNCC	2 cut(s)	139, 503
NmuCI	GTSAC	3 cut(s)	236, 354, 679
NspV	TTCGAA	1 cut(s)	32
PaeR7I	CTCGAG	1 cut(s)	757
PfeI	GAWTC	4 cut(s)	51, 242, 878, 905
PkrI	GCNGC	1 cut(s)	887
PleI	GAGTC	1 cut(s)	413
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	413
Ppu21I	YACGTR	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	504
PspCI	CACGTG	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	605
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	139, 503
PspPI	GGNCC	2 cut(s)	123, 851
PstI	CTGCAG	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	230
RseI	CAYNNNNRTG	2 cut(s)	350, 444
SaqAI	TTAA	2 cut(s)	149, 171
SatI	GCNGC	1 cut(s)	886
Sau3AI	GATC	5 cut(s)	70, 277, 342, 370, 721
Sau96I	GGNCC	2 cut(s)	123, 851
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	3 cut(s)	127, 143, 506
SduI	GDGCHC	1 cut(s)	944
SfaNI	GCATC	1 cut(s)	760
SfcI	CTRYAG	2 cut(s)	222, 823
Sfr274I	CTCGAG	1 cut(s)	757
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	2 cut(s)	123, 851
SlaI	CTCGAG	1 cut(s)	757
SmiMI	CAYNNNNRTG	2 cut(s)	350, 444
SmlI	CTYRAG	2 cut(s)	556, 757
SmoI	CTYRAG	2 cut(s)	556, 757
Sse9I	AATT	7 cut(s)	34, 57, 161, 427, 509, 703, 746
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	2 cut(s)	543, 958
StyD4I	CCNGG	3 cut(s)	125, 141, 504
TaaI	ACNGT	5 cut(s)	107, 318, 452, 671, 827
TaiI	ACGT	2 cut(s)	342, 952
TaqI	TCGA	4 cut(s)	32, 73, 245, 758
TasI	AATT	7 cut(s)	34, 57, 161, 427, 509, 703, 746
TfiI	GAWTC	4 cut(s)	51, 242, 878, 905
Tru1I	TTAA	2 cut(s)	149, 171
Tru9I	TTAA	2 cut(s)	149, 171
TscAI	CASTG	1 cut(s)	944
TseFI	GTSAC	3 cut(s)	236, 354, 679
TseI	GCWGC	1 cut(s)	885
Tsp45I	GTSAC	3 cut(s)	236, 354, 679
TspDTI	ATGAA	4 cut(s)	347, 539, 588, 696
TspGWI	ACGGA	2 cut(s)	219, 638
TspRI	CASTG	1 cut(s)	944
VpaK11BI	GGWCC	2 cut(s)	123, 851
XapI	RAATTY	5 cut(s)	34, 161, 427, 509, 703
XcmI	CCANNNNNNNNNTGG	2 cut(s)	578, 624
XhoI	CTCGAG	1 cut(s)	757
XspI	CTAG	2 cut(s)	543, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.