Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Forward (+)

58078677 .. 58082601

Gene Structure 3925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG388100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGGGAGGTTGGAATCTCATTCATTTCATAGGCTTCATATTGTTATCTGTTCTCCTCTTGTCGGAAACCTGCCTGGCTAGTGTTAGAAATTTTGGGAAAATTAGTCCGGGGTTTCAAGGGACTCAGATGAATTGGATTGACAATGATGGGCTGTTTCTCTTGTCTAATCAATCCGATTTTGCTTTTGGCTTCGTCACCACTCCTCAAGATGTCACTTTGTTCCTGCTTTGTATTGTCCACAAGGACAGCATGAATATAGTATGGACTGCAAATAGGGGTTCCCCAGTTTCTAATTCTGATAAATTTGTGTTTGATGATAAGGGTAGTGTGTCGTTGCTAAAAGGTGGAAGTGTGGTTTGGTCTATAGATACTGGTGGCAAATCAGTTTCTGCAATGGAATTGCAGGACTCTGGAAATTTGGTTTTGCTTGGGGATGACAATGGAGTAGTTTGGCAGAGTTTTAGTCATCCAACTGATACTCTATTATGGAACCAGGTGTTTCAGGAAGGAATGAAACTTCAAAGCGAACCAAGCTCCAACAATGTGACCTATATTCTAGAAATCAAGTCCGGCGACTTGATTCTTTCTGCAGGTTTCCAAACACCACAGCCTTATTGGTCCATGGGGAAGGAAAGCCGTAAAACAATCAACACAGATGGTGGGGCAGTCACTTCAGCTTCTATCAGTGCAAATTCATGGAAGTTCTATGATAGTTCTAAAGTGCTACTATGGCAATTTATTTTCTCATCCAATGCTGATGTTAATGCCACATGGATTGCAGTTTTGGGAAATGATGGGGTTATTTCTTTTTCCAATCTTCAGAATGGAGATTCAAATGGTCCTTCAACAACGAAAATACCAGGGGACTCATGCAGCACCCCCGAACCTTGTGATGCATATTTTGAATGTTCCAGCAACAACAAGTGCCAGTGCCCTTCAGGTCTCAGCTCCCATGCGAATTGCAAGTCGGGGATTGTCACCTCATGTTCAAAGGGTTCTACAACGCTTACAAGTGCTGGTGATGGGATCTATTATTTTGCATTGGGATTTGTTTCACCCTCTTCAAGAACTGACTTGGAAGGTTGCAAAAGCTCTTGCCTTGGTAATTGTTCATGTGTTGCTCTGTTCTATCAAAACAGTACAAGAAATTGTTATATGTTTGACAGGATAGGTAGCTTCCAAGATTCCGACAAGGGCTTTGTTTCGTATGTTAAAGTGTTGAGTGATGGAGGCAGTGGGGGCAGCGGAAGCAAGAAACACTTACCTTATATTGCGATCATTGCTGTTTCGACAGTAGTTGTTATCTGTGGCCTACTCTTTGCAGGATACCGATACTACCAGAGGAAGAGAGATGCACCACCATCTCCTGAAGATGCTTCAGAAGAGGATAATTTCCTGGAAAATTTAACTGGGATGCCAATCCGTTTCAGTTACAAGGATCTTCAAACTGCAACTAACAACTTCTCAAAGAAGCTTGGGCAAGGAGGTTTTGGCTCGGTTTACGAAGGGGTTCTCCCAGATGGAACTCGACTTGCTGTGAAGAAGTTGGAAGGCATTGGTCAGGGAAAGAAAGAGTTTCGAGCTGAAGTTAGCATCATCGGCAGTATCCATCACCTGCACTTGGTCCGGCTCCGGGGCTTCTGTGCAGAAGGGAGCTATCGACTTCTTGCTTACGAGTACATGGCAAATGGATCCCTGGACAAATGGATATTCAGGAAAAAAGATGAAGAGTTCCTATTGGATTGGGAGACAAGATTCAACATAGCAGTGGGTACTGCCAAAGGACTAGCTTATCTCCATGAAGATTGTGATTCAAAGATTATTCACTGCGACATAAAGCCTGAAAACGTGCTCCTCGACAACAATTACCATGCCAAAGTCTCAGATTTCGGTTTGGCAAAGCTGATGACCCGGGAGCAGAGCCATGTCTTCACAACAATGCGAGGAACTCGAGGGTACCTTGCCCCAGAGTGGATCACAAACTACGCTATTTCGGAGAAAAGTGACGTGTACAGCTACGGAATGCTGCTGCTGGAGATCATTGGTGGAAGAAAGAACTATGACCCATCAGAAACCTCTGAAAAATCGCATTTTCCATCGTATGCCTTCAAGATGTTGGAAGAAGGGAAACTCAAGGACATCTTCGACCCCAAGGTGAATATAGATGACGTTGACGAGAGGGTGTCTACTGCGGTTATGGTAGCATTGTGGTGTATACAGGAAGACATGACTTTGAGGCCAGCAATGACGAAGGTTGTCCAAATGCTTGAAGGCATCTGCTCTGTTCCTAGGCCTCCAACTTCCTCAACAATGGGGTCACGCCTTTACTCGAGTTTCTTCAAATCAATGAGTGAAGTGGGGACTTCCTCAGGTCCATCGGACTGCAACAGCGATACCCACCTTTCTGCAGTGCGCCTTTCTGGGCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

810

Amino Acids

88.79

Weight (kDa)

5.64

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	86 - 166	1.7e-15	D-mannose binding lectin
PK_Tyr_Ser-Thr	PF07714	488 - 755	4.6e-42	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	489 - 754	2.7e-49	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1623
Acc36I	ACCTGC	3 cut(s)	77, 581, 1623
Acc65I	GGTACC	1 cut(s)	1956
AccB1I	GGYRCC	1 cut(s)	1956
AccI	GTMKAC	2 cut(s)	2186, 2215
AciI	CCGC	2 cut(s)	1245, 2192
AclWI	GGATC	5 cut(s)	1034, 1446, 1686, 1699, 1982
AcsI	RAATTY	5 cut(s)	88, 302, 415, 691, 1402
AcuI	CTGAAG	6 cut(s)	657, 803, 921, 1362, 1389, 1605
AfaI	GTAC	5 cut(s)	1141, 1679, 1774, 1958, 2012
AfiI	CCNNNNNNNGG	4 cut(s)	61, 1621, 1633, 1971
AflIII	ACRYGT	1 cut(s)	2007
AjiI	CACGTC	1 cut(s)	2008
AjnI	CCWGG	5 cut(s)	72, 492, 859, 1395, 1695
AjuI	GAANNNNNNNTTGG	2 cut(s)	340, 372
Alw21I	GWGCWC	1 cut(s)	1854
Alw26I	GTCTC	3 cut(s)	947, 1742, 1885
AlwI	GGATC	5 cut(s)	1034, 1446, 1686, 1699, 1982
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	3 cut(s)	1911, 1950, 2329
AoxI	GGCC	4 cut(s)	1309, 2237, 2291, 2423
ApeKI	GCWGC	4 cut(s)	873, 1242, 2026, 2029
ApoI	RAATTY	5 cut(s)	88, 302, 415, 691, 1402
ArsI	GACNNNNNNTTYG	4 cut(s)	950, 982, 1181, 1213
Asp700I	GAANNNNTTC	1 cut(s)	1509
Asp718I	GGTACC	1 cut(s)	1956
AspA2I	CCTAGG	1 cut(s)	2288
AspLEI	GCGC	1 cut(s)	2415
AspS9I	GGNCC	5 cut(s)	618, 839, 1624, 2372, 2423
AsuC2I	CCSGG	4 cut(s)	108, 1634, 1912, 1913
AsuHPI	GGTGA	6 cut(s)	187, 970, 1031, 1047, 1604, 2167
AvaI	CYCGRG	3 cut(s)	1911, 1950, 2329
AvaII	GGWCC	4 cut(s)	618, 839, 1624, 2372
AvrII	CCTAGG	1 cut(s)	2288
AxyI	CCTNAGG	1 cut(s)	2368
BaeGI	GKGCMC	1 cut(s)	935
BamHI	GGATCC	1 cut(s)	1691
BanI	GGYRCC	1 cut(s)	1956
BbsI	GAAGAC	2 cut(s)	1921, 2229
Bbv12I	GWGCWC	1 cut(s)	1854
BbvI	GCAGC	4 cut(s)	885, 1254, 2013, 2016
BceAI	ACGGC	1 cut(s)	621
BciT130I	CCWGG	5 cut(s)	74, 494, 861, 1397, 1697
BciVI	GTATCC	2 cut(s)	1319, 1616
BcnI	CCSGG	4 cut(s)	108, 1634, 1912, 1913
BcoDI	GTCTC	3 cut(s)	947, 1742, 1885
BfaI	CTAG	4 cut(s)	78, 557, 1787, 2289
BfmI	CTRYAG	3 cut(s)	363, 588, 2406
BfuAI	ACCTGC	3 cut(s)	77, 581, 1623
BfuI	GTATCC	2 cut(s)	1319, 1616
BisI	GCNGC	4 cut(s)	874, 1243, 2027, 2030
BlnI	CCTAGG	1 cut(s)	2288
BlsI	GCNGC	4 cut(s)	875, 1244, 2028, 2031
Bme1390I	CCNGG	9 cut(s)	74, 108, 494, 861, 1397, 1634, 1697, 1912, 1913
Bme18I	GGWCC	4 cut(s)	618, 839, 1624, 2372
BmeT110I	CYCGRG	3 cut(s)	1911, 1950, 2329
BmgBI	CACGTC	1 cut(s)	2008
BmgT120I	GGNCC	5 cut(s)	618, 839, 1624, 2372, 2423
BmiI	GGNNCC	5 cut(s)	280, 491, 1631, 1693, 1958
BmrFI	CCNGG	9 cut(s)	74, 108, 494, 861, 1397, 1634, 1697, 1912, 1913
BmrI	ACTGGG	2 cut(s)	278, 1419
BmsI	GCATC	6 cut(s)	883, 1342, 1363, 1404, 1602, 2283
BmuI	ACTGGG	2 cut(s)	278, 1419
BpiI	GAAGAC	2 cut(s)	1921, 2229
BpmI	CTGGAG	1 cut(s)	2054
BpuEI	CTTGAG	2 cut(s)	189, 2117
BpuMI	CCSGG	4 cut(s)	108, 1634, 1912, 1913
BsaBI	GATNNNNATC	1 cut(s)	1418
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	9 cut(s)	107, 621, 860, 1099, 1633, 1695, 1911, 2151, 2288
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 1621, 1633, 1971
Bse1I	ACTGG	4 cut(s)	284, 376, 928, 1414
Bse21I	CCTNAGG	1 cut(s)	2368
Bse3DI	GCAATG	3 cut(s)	399, 1278, 2250
Bse8I	GATNNNNATC	1 cut(s)	1418
BseBI	CCWGG	5 cut(s)	74, 494, 861, 1397, 1697
BseDI	CCNNGG	9 cut(s)	107, 621, 860, 1099, 1633, 1695, 1911, 2151, 2288
BseGI	GGATG	4 cut(s)	439, 466, 746, 1419
BseJI	GATNNNNATC	1 cut(s)	1418
BseLI	CCNNNNNNNGG	4 cut(s)	61, 1621, 1633, 1971
BseMI	GCAATG	3 cut(s)	399, 1278, 2250
BseMII	CTCAG	4 cut(s)	137, 958, 1896, 2382
BseNI	ACTGG	4 cut(s)	284, 376, 928, 1414
BseRI	GAGGAG	3 cut(s)	44, 192, 1844
BseSI	GKGCMC	1 cut(s)	935
BseXI	GCAGC	4 cut(s)	885, 1254, 2013, 2016
BsgI	GTGCAG	2 cut(s)	1601, 1665
BshFI	GGCC	4 cut(s)	1311, 2239, 2293, 2425
BshNI	GGYRCC	1 cut(s)	1956
BsiHKAI	GWGCWC	1 cut(s)	1854
BsiHKCI	CYCGRG	3 cut(s)	1911, 1950, 2329
BsiSI	CCGG	5 cut(s)	107, 570, 1627, 1633, 1912
BslFI	GGGAC	3 cut(s)	133, 878, 2374
BslI	CCNNNNNNNGG	4 cut(s)	61, 1621, 1633, 1971
BsmAI	GTCTC	3 cut(s)	947, 1742, 1885
BsmFI	GGGAC	3 cut(s)	133, 878, 2374
BsmI	GAATGC	1 cut(s)	2028
BsnI	GGCC	4 cut(s)	1311, 2239, 2293, 2425
Bso31I	GGTCTC	1 cut(s)	947
BsoBI	CYCGRG	3 cut(s)	1911, 1950, 2329
Bsp1286I	GDGCHC	2 cut(s)	935, 1854
Bsp1407I	TGTACA	1 cut(s)	2010
Bsp143I	GATC	6 cut(s)	1026, 1275, 1438, 1691, 1974, 2037
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	2 cut(s)	1245, 2192
BspANI	GGCC	4 cut(s)	1311, 2239, 2293, 2425
BspCNI	CTCAG	4 cut(s)	136, 957, 1895, 2381
BspLI	GGNNCC	5 cut(s)	280, 491, 1631, 1693, 1958
BspMAI	CTGCAG	2 cut(s)	592, 2410
BspMI	ACCTGC	3 cut(s)	77, 581, 1623
BspPI	GGATC	5 cut(s)	1034, 1446, 1686, 1699, 1982
BspT107I	GGYRCC	1 cut(s)	1956
BspTNI	GGTCTC	1 cut(s)	947
BsrDI	GCAATG	3 cut(s)	399, 1278, 2250
BsrGI	TGTACA	1 cut(s)	2010
BsrI	ACTGG	4 cut(s)	284, 376, 928, 1414
BssECI	CCNNGG	9 cut(s)	107, 621, 860, 1099, 1633, 1695, 1911, 2151, 2288
BssMI	GATC	6 cut(s)	1026, 1275, 1438, 1691, 1974, 2037
BssNAI	GTATAC	1 cut(s)	2216
BssT1I	CCWWGG	4 cut(s)	621, 1099, 2151, 2288
Bst1107I	GTATAC	1 cut(s)	2216
Bst2UI	CCWGG	5 cut(s)	74, 494, 861, 1397, 1697
Bst4CI	ACNGT	2 cut(s)	1139, 1294
Bst6I	CTCTTC	4 cut(s)	1066, 1340, 1377, 1722
BstAUI	TGTACA	1 cut(s)	2010
BstC8I	GCNNGC	1 cut(s)	2241
BstDEI	CTNAG	4 cut(s)	123, 944, 1882, 2368
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	4 cut(s)	439, 466, 746, 1419
BstHHI	GCGC	1 cut(s)	2415
BstKTI	GATC	6 cut(s)	1029, 1278, 1441, 1694, 1977, 2040
BstMAI	GTCTC	3 cut(s)	947, 1742, 1885
BstMBI	GATC	6 cut(s)	1026, 1275, 1438, 1691, 1974, 2037
BstMWI	GCNNNNNNNGC	6 cut(s)	531, 730, 1239, 1248, 1280, 1599
BstNI	CCWGG	5 cut(s)	74, 494, 861, 1397, 1697
BstSCI	CCNGG	9 cut(s)	72, 106, 492, 859, 1395, 1632, 1695, 1910, 1911
BstSFI	CTRYAG	3 cut(s)	363, 588, 2406
BstSLI	GKGCMC	1 cut(s)	935
BstV1I	GCAGC	4 cut(s)	885, 1254, 2013, 2016
BstV2I	GAAGAC	2 cut(s)	1921, 2229
BstX2I	RGATCY	3 cut(s)	1026, 1438, 1691
BstYI	RGATCY	3 cut(s)	1026, 1438, 1691
BstZ17I	GTATAC	1 cut(s)	2216
Bsu36I	CCTNAGG	1 cut(s)	2368
BsuI	GTATCC	2 cut(s)	1319, 1616
BsuRI	GGCC	4 cut(s)	1311, 2239, 2293, 2425
BtgI	CCRYGG	1 cut(s)	621
BtrI	CACGTC	1 cut(s)	2008
BtsCI	GGATG	4 cut(s)	439, 466, 746, 1419
BtsI	GCAGTG	4 cut(s)	1240, 1773, 1825, 2415
BtsIMutI	CAGTG	6 cut(s)	691, 935, 1240, 1773, 1825, 2415
BveI	ACCTGC	3 cut(s)	77, 581, 1623
Cac8I	GCNNGC	1 cut(s)	2241
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	2415
Cfr13I	GGNCC	5 cut(s)	618, 839, 1624, 2372, 2423
Cfr9I	CCCGGG	1 cut(s)	1911
CsiI	ACCWGGT	1 cut(s)	492
Csp6I	GTAC	5 cut(s)	1140, 1678, 1773, 1957, 2011
CspCI	CAANNNNNGTGG	2 cut(s)	757, 792
CviQI	GTAC	5 cut(s)	1140, 1678, 1773, 1957, 2011
DdeI	CTNAG	4 cut(s)	123, 944, 1882, 2368
DpnI	GATC	6 cut(s)	1028, 1277, 1440, 1693, 1976, 2039
DpnII	GATC	6 cut(s)	1026, 1275, 1438, 1691, 1974, 2037
Eam1104I	CTCTTC	4 cut(s)	1066, 1340, 1377, 1722
EarI	CTCTTC	4 cut(s)	1066, 1340, 1377, 1722
Eco130I	CCWWGG	4 cut(s)	621, 1099, 2151, 2288
Eco147I	AGGCCT	1 cut(s)	2293
Eco31I	GGTCTC	1 cut(s)	947
Eco47I	GGWCC	4 cut(s)	618, 839, 1624, 2372
Eco57I	CTGAAG	6 cut(s)	657, 803, 921, 1362, 1389, 1605
Eco81I	CCTNAGG	1 cut(s)	2368
Eco88I	CYCGRG	3 cut(s)	1911, 1950, 2329
EcoRII	CCWGG	5 cut(s)	72, 492, 859, 1395, 1695
EcoT14I	CCWWGG	4 cut(s)	621, 1099, 2151, 2288
EcoT22I	ATGCAT	1 cut(s)	898
ErhI	CCWWGG	4 cut(s)	621, 1099, 2151, 2288
FalI	AAGNNNNNCTT	4 cut(s)	1244, 1276, 2126, 2158
FaqI	GGGAC	3 cut(s)	133, 878, 2374
FblI	GTMKAC	2 cut(s)	2186, 2215
Fnu4HI	GCNGC	4 cut(s)	874, 1243, 2027, 2030
FokI	GGATG	4 cut(s)	446, 453, 733, 1426
Fsp4HI	GCNGC	4 cut(s)	874, 1243, 2027, 2030
FspBI	CTAG	4 cut(s)	78, 557, 1787, 2289
GlaI	GCGC	1 cut(s)	2414
GluI	GCNGC	4 cut(s)	874, 1243, 2027, 2030
GsuI	CTGGAG	1 cut(s)	2054
HaeIII	GGCC	4 cut(s)	1311, 2239, 2293, 2425
HapII	CCGG	5 cut(s)	107, 570, 1627, 1633, 1912
HhaI	GCGC	1 cut(s)	2415
Hin6I	GCGC	1 cut(s)	2413
HinP1I	GCGC	1 cut(s)	2413
HincII	GTYRAC	1 cut(s)	2173
HindII	GTYRAC	1 cut(s)	2173
HindIII	AAGCTT	1 cut(s)	1472
HinfI	GANTC	9 cut(s)	13, 121, 407, 580, 830, 866, 1184, 1755, 1811
HpaII	CCGG	5 cut(s)	107, 570, 1627, 1633, 1912
HphI	GGTGA	6 cut(s)	187, 970, 1031, 1047, 1604, 2167
Hpy166II	GTNNAC	6 cut(s)	238, 1501, 2011, 2173, 2187, 2216
Hpy188III	TCNNGA	8 cut(s)	206, 411, 503, 557, 1065, 1367, 1714, 2110
Hpy8I	GTNNAC	6 cut(s)	238, 1501, 2011, 2173, 2187, 2216
HpyCH4III	ACNGT	2 cut(s)	1139, 1294
HpyCH4IV	ACGT	3 cut(s)	1848, 2007, 2169
HpyF10VI	GCNNNNNNNGC	6 cut(s)	531, 730, 1239, 1248, 1280, 1599
HpyF3I	CTNAG	4 cut(s)	123, 944, 1882, 2368
HpySE526I	ACGT	3 cut(s)	1848, 2007, 2169
HspAI	GCGC	1 cut(s)	2413
KpnI	GGTACC	1 cut(s)	1960
Kzo9I	GATC	6 cut(s)	1026, 1275, 1438, 1691, 1974, 2037
LmnI	GCTCC	6 cut(s)	539, 953, 1635, 1653, 1857, 1915
Lsp1109I	GCAGC	4 cut(s)	885, 1254, 2013, 2016
LweI	GCATC	6 cut(s)	883, 1342, 1363, 1404, 1602, 2283
MabI	ACCWGGT	1 cut(s)	492
MaeI	CTAG	4 cut(s)	78, 557, 1787, 2289
MaeII	ACGT	3 cut(s)	1848, 2007, 2169
MaeIII	GTNAC	8 cut(s)	193, 211, 544, 667, 976, 1430, 2003, 2316
MalI	GATC	6 cut(s)	1028, 1277, 1440, 1693, 1976, 2039
MboI	GATC	6 cut(s)	1026, 1275, 1438, 1691, 1974, 2037
MflI	RGATCY	3 cut(s)	1026, 1438, 1691
MhlI	GDGCHC	2 cut(s)	935, 1854
MlyI	GAGTC	3 cut(s)	115, 401, 860
MmeI	TCCRAC	7 cut(s)	42, 494, 561, 1212, 1527, 2097, 2321
Mph1103I	ATGCAT	1 cut(s)	898
MroXI	GAANNNNTTC	1 cut(s)	1509
MseI	TTAA	3 cut(s)	762, 1212, 1406
MslI	CAYNNNNRTG	3 cut(s)	1766, 1937, 2209
MspA1I	CMGCKG	1 cut(s)	1245
MspI	CCGG	5 cut(s)	107, 570, 1627, 1633, 1912
MspR9I	CCNGG	9 cut(s)	74, 108, 494, 861, 1397, 1634, 1697, 1912, 1913
Mva1269I	GAATGC	1 cut(s)	2028
MvaI	CCWGG	5 cut(s)	74, 494, 861, 1397, 1697
MwoI	GCNNNNNNNGC	6 cut(s)	531, 730, 1239, 1248, 1280, 1599
NciI	CCSGG	4 cut(s)	108, 1634, 1912, 1913
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	6 cut(s)	1026, 1275, 1438, 1691, 1974, 2037
NlaIV	GGNNCC	5 cut(s)	280, 491, 1631, 1693, 1958
NmuCI	GTSAC	7 cut(s)	193, 211, 544, 667, 976, 2003, 2316
NsiI	ATGCAT	1 cut(s)	898
PaeR7I	CTCGAG	2 cut(s)	1950, 2329
PaqCI	CACCTGC	1 cut(s)	1623
PceI	AGGCCT	1 cut(s)	2293
PcsI	WCGNNNNNNNCGW	1 cut(s)	1854
PctI	GAATGC	1 cut(s)	2028
PdmI	GAANNNNTTC	1 cut(s)	1509
PfeI	GAWTC	6 cut(s)	13, 580, 830, 1184, 1755, 1811
PfoI	TCCNGGA	1 cut(s)	1395
PkrI	GCNGC	4 cut(s)	875, 1244, 2028, 2031
PleI	GAGTC	3 cut(s)	115, 401, 860
PpsI	GAGTC	3 cut(s)	115, 401, 860
Psp6I	CCWGG	5 cut(s)	72, 492, 859, 1395, 1695
PspGI	CCWGG	5 cut(s)	72, 492, 859, 1395, 1695
PspN4I	GGNNCC	5 cut(s)	280, 491, 1631, 1693, 1958
PspPI	GGNCC	5 cut(s)	618, 839, 1624, 2372, 2423
PspXI	VCTCGAGB	2 cut(s)	1950, 2329
PstI	CTGCAG	2 cut(s)	592, 2410
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	3 cut(s)	1026, 1438, 1691
RsaI	GTAC	5 cut(s)	1141, 1679, 1774, 1958, 2012
RsaNI	GTAC	5 cut(s)	1140, 1678, 1773, 1957, 2011
RseI	CAYNNNNRTG	3 cut(s)	1766, 1937, 2209
SaqAI	TTAA	3 cut(s)	762, 1212, 1406
SatI	GCNGC	4 cut(s)	874, 1243, 2027, 2030
Sau3AI	GATC	6 cut(s)	1026, 1275, 1438, 1691, 1974, 2037
Sau96I	GGNCC	5 cut(s)	618, 839, 1624, 2372, 2423
SchI	GAGTC	3 cut(s)	115, 401, 860
ScrFI	CCNGG	9 cut(s)	74, 108, 494, 861, 1397, 1634, 1697, 1912, 1913
SduI	GDGCHC	2 cut(s)	935, 1854
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	6 cut(s)	883, 1342, 1363, 1404, 1602, 2283
SfcI	CTRYAG	3 cut(s)	363, 588, 2406
Sfr274I	CTCGAG	2 cut(s)	1950, 2329
SinI	GGWCC	4 cut(s)	618, 839, 1624, 2372
SlaI	CTCGAG	2 cut(s)	1950, 2329
SmaI	CCCGGG	1 cut(s)	1913
SmiMI	CAYNNNNRTG	3 cut(s)	1766, 1937, 2209
SmlI	CTYRAG	4 cut(s)	204, 1950, 2132, 2329
SmoI	CTYRAG	4 cut(s)	204, 1950, 2132, 2329
SseBI	AGGCCT	1 cut(s)	2293
SsiI	CCGC	2 cut(s)	1245, 2192
SspMI	CTAG	4 cut(s)	78, 557, 1787, 2289
StuI	AGGCCT	1 cut(s)	2293
StyD4I	CCNGG	9 cut(s)	72, 106, 492, 859, 1395, 1632, 1695, 1910, 1911
StyI	CCWWGG	4 cut(s)	621, 1099, 2151, 2288
TaaI	ACNGT	2 cut(s)	1139, 1294
TaiI	ACGT	3 cut(s)	1851, 2010, 2172
TaqI	TCGA	8 cut(s)	1289, 1528, 1579, 1660, 1857, 1951, 2145, 2330
TatI	WGTACW	3 cut(s)	1139, 1677, 2010
TfiI	GAWTC	6 cut(s)	13, 580, 830, 1184, 1755, 1811
Tru1I	TTAA	3 cut(s)	762, 1212, 1406
Tru9I	TTAA	3 cut(s)	762, 1212, 1406
TscAI	CASTG	6 cut(s)	691, 935, 1240, 1773, 1832, 2415
TseFI	GTSAC	7 cut(s)	193, 211, 544, 667, 976, 2003, 2316
TseI	GCWGC	4 cut(s)	873, 1242, 2026, 2029
Tsp45I	GTSAC	7 cut(s)	193, 211, 544, 667, 976, 2003, 2316
TspGWI	ACGGA	2 cut(s)	1412, 2034
TspMI	CCCGGG	1 cut(s)	1911
TspRI	CASTG	6 cut(s)	691, 935, 1240, 1773, 1832, 2415
VpaK11BI	GGWCC	4 cut(s)	618, 839, 1624, 2372
XapI	RAATTY	5 cut(s)	88, 302, 415, 691, 1402
XbaI	TCTAGA	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XhoI	CTCGAG	2 cut(s)	1950, 2329
XmaI	CCCGGG	1 cut(s)	1911
XmaJI	CCTAGG	1 cut(s)	2288
XmiI	GTMKAC	2 cut(s)	2186, 2215
XmnI	GAANNNNTTC	1 cut(s)	1509
XspI	CTAG	4 cut(s)	78, 557, 1787, 2289
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.