Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Reverse (-)

31630368 .. 31630523

Gene Structure 156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1144200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGGTTGTTTCTGTTATCTAACAAGTCCGAGTTTGGTTTTTGGCTTCCAGACTACTCCCAATGATGTCACATTGTTTCTGCTGGTTGTTGTCCACAAGGACAGTTCTACGGTGGTCTGGACTGCGAATAGGGGTTCCCCGGTTTTCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

52

Amino Acids

5.66

Weight (kDa)

7.82

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	104, 112
BstSCI	CCNGG	1 cut(s)	138
CviJI	RGCY	1 cut(s)	45
CviKI_1	RGCY	1 cut(s)	45
HapII	CCGG	1 cut(s)	140
HpaII	CCGG	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	30, 155
Hpy188III	TCNNGA	2 cut(s)	49, 118
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	104, 112
LpnPI	CCDG	3 cut(s)	62, 68, 103
MaeIII	GTNAC	1 cut(s)	67
MluCI	AATT	1 cut(s)	149
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	140
NciI	CCSGG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	140
SgeI	CNNG	8 cut(s)	36, 42, 61, 95, 109, 130, 151, 152
Sse9I	AATT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	104, 112
TasI	AATT	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.