Rroxscaffold_7G00170090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009226
Physical Location & Seq
Forward (+)
10561447 .. 10563698
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170090.1

Sequence Viewer

Length: 1017 bp
ATGATGAAGTGGTCACCGTGGCCAGGCGGATCAACGAGGAGGTTTCACGTGAAAGTCAACCAGCTAAAGCTTCATGGATTTTCATGTGAAAACGAGAGAGAAAAGACATTGTTGATCGAGGTGAAATGGAAAGGTTCCAAAAAGCATGGAGGTCCGTCCGGAATGCTAATGGCGCCGTTTTACGGACGATCGATGTGTCAGAAAAACTACACCGGTAAGGGTTTTATTGGAAAAGGTGAAATCGTTGAATGGGACGATGAGTTTCAGAGCCTCTGTAATTTTGGGTCAAAACAGAGCGGTGGTTGTTTTAGTCCTTGGGATTTGACCTTCACTTTTTTACATGGAGAGAGTGCAGAATTGAAAAGTGACATGGCGGTTCTGGGGAGGGTTTCGATGAACTTGGCAGGAATGGCTTCGAAGATGGATGCTGAGATTCACACAAAGCTTTCTGTAAATTTAAACATGGAAGGGATGATCATCCCCATCGAATCTACCCTTTTGGTTTGTCTAAGCTTTGCTGAGGTCAGAAACACAAATGACTCGGCCGGAATCGTCGAAGACTCGGCCGAGTCGGACAAAGACAGGATGGTTCGAGGGGTCGGCTACTTTAGAAGCTTCAGAAAGACCAAGAATGAGAGAAAGAGTTCCGGCGACCGAGTCACTTCTAGTGACACGGACGATTCCTGCTTAACCGATTCAGACGGGTCTTCAGGGAATGAAACTTCACAGACGGAGTTGGGATCGTCCCTGAGTTATGAGACTCAGCTTGACTCGGGCCAGAAGAGTTGGTTCTCTAAGAAGCGAAAGTGGTTCAGTCCTAGACCACCAAGAAGAAAAGTAGAGCCGTTGATTGAGAGGACTATCGAAGTCAATGGAGATCCGATTGCCGTTGACAATCATCCCAGTGATTCAACACAGGTACTGTTGAACATTCTGAAGAATCACACCAGCAAGATAAAAATTGCATCACAAGGACTAGCTGGGAAGCAAGGGAAGTCGCAAGCAGAGATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT-C2

Protein Analysis

338

Amino Acids

37.46

Weight (kDa)

8.61

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 297
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 3 cut(s) 27, 297, 374
AclWI GGATC 3 cut(s) 37, 748, 872
AcoI YGGCCR 3 cut(s) 20, 543, 564
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 3 cut(s) 601, 693, 956
AcvI CACGTG 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 1 cut(s) 921
AfiI CCNNNNNNNGG 2 cut(s) 23, 182
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 4 cut(s) 248, 361, 912, 928
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 7 cut(s) 64, 70, 445, 513, 615, 766, 980
AluI AGCT 7 cut(s) 64, 70, 445, 513, 615, 766, 980
Alw26I GTCTC 1 cut(s) 752
AlwI GGATC 3 cut(s) 37, 748, 872
AlwNI CAGNNNCTG 1 cut(s) 922
Ama87I CYCGRG 1 cut(s) 772
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 4 cut(s) 20, 543, 564, 775
ApoI RAATTY 1 cut(s) 454
AsiGI ACCGGT 1 cut(s) 212
Asp700I GAANNNNTTC 2 cut(s) 412, 643
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 152, 775
AsuHPI GGTGA 3 cut(s) 6, 133, 248
AsuII TTCGAA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 772
AvaII GGWCC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 172
BbrPI CACGTG 1 cut(s) 49
BbsI GAAGAC 2 cut(s) 564, 699
BbvCI CCTCAGC 1 cut(s) 519
BccI CCATC 4 cut(s) 415, 491, 580, 1003
BceAI ACGGC 3 cut(s) 160, 829, 872
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 752
BfaI CTAG 4 cut(s) 666, 819, 977, 1015
BfoI RGCGCY 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 772
BmgT120I GGNCC 2 cut(s) 152, 775
BmiI GGNNCC 2 cut(s) 136, 174
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 897
BmsI GCATC 2 cut(s) 415, 974
BmuI ACTGGG 1 cut(s) 897
BpiI GAAGAC 2 cut(s) 564, 699
Bpu10I CCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 416
Bsa29I ATCGAT 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 49
BsaBI GATNNNNATC 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 17, 314
BsaWI WCCGGW 2 cut(s) 158, 212
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 182
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 903
Bse8I GATNNNNATC 1 cut(s) 476
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 17, 314
BseGI GGATG 5 cut(s) 430, 477, 477, 591, 898
BseJI GATNNNNATC 1 cut(s) 476
BseLI CCNNNNNNNGG 2 cut(s) 23, 182
BseMII CTCAG 4 cut(s) 420, 510, 740, 776
BseNI ACTGG 1 cut(s) 903
BseRI GAGGAG 1 cut(s) 52
BseX3I CGGCCG 2 cut(s) 543, 564
BseYI CCCAGC 1 cut(s) 980
BsgI GTGCAG 1 cut(s) 372
Bsh1285I CGRYCG 4 cut(s) 191, 546, 567, 655
BshFI GGCC 4 cut(s) 22, 545, 566, 777
BshNI GGYRCC 1 cut(s) 172
BshTI ACCGGT 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 191
BsiEI CGRYCG 4 cut(s) 191, 546, 567, 655
BsiHKCI CYCGRG 1 cut(s) 772
BsiSI CCGG 4 cut(s) 159, 213, 546, 648
BslFI GGGAC 2 cut(s) 266, 730
BslI CCNNNNNNNGG 2 cut(s) 23, 182
BsmAI GTCTC 1 cut(s) 752
BsmFI GGGAC 2 cut(s) 266, 730
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 4 cut(s) 22, 545, 566, 777
BsoBI CYCGRG 1 cut(s) 772
Bsp119I TTCGAA 1 cut(s) 416
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 6 cut(s) 29, 114, 188, 474, 740, 877
BspACI CCGC 3 cut(s) 27, 297, 374
BspANI GGCC 4 cut(s) 22, 545, 566, 777
BspCNI CTCAG 4 cut(s) 421, 511, 741, 775
BspDI ATCGAT 1 cut(s) 191
BspEI TCCGGA 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 136, 174
BspPI GGATC 3 cut(s) 37, 748, 872
BspT104I TTCGAA 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 903
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 17, 314
BssMI GATC 6 cut(s) 29, 114, 188, 474, 740, 877
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 18, 924
Bst6I CTCTTC 1 cut(s) 776
BstACI GRCGYC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 6 cut(s) 429, 509, 519, 749, 762, 795
BstDSI CCRYGG 1 cut(s) 17
BstEII GGTNACC 1 cut(s) 12
BstF5I GGATG 5 cut(s) 430, 477, 477, 591, 898
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 6 cut(s) 32, 117, 191, 477, 743, 880
BstMAI GTCTC 1 cut(s) 752
BstMBI GATC 6 cut(s) 29, 114, 188, 474, 740, 877
BstMCI CGRYCG 4 cut(s) 191, 546, 567, 655
BstMWI GCNNNNNNNGC 2 cut(s) 172, 410
BstNI CCWGG 1 cut(s) 24
BstPI GGTNACC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 22
BstV2I GAAGAC 2 cut(s) 564, 699
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
BstZI CGGCCG 2 cut(s) 543, 564
Bsu15I ATCGAT 1 cut(s) 191
BsuRI GGCC 4 cut(s) 22, 545, 566, 777
BsuTUI ATCGAT 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 5 cut(s) 430, 477, 477, 591, 898
BtsIMutI CAGTG 1 cut(s) 910
Cac8I GCNNGC 1 cut(s) 1002
CaiI CAGNNNCTG 1 cut(s) 922
CfoI GCGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 152, 775
ClaI ATCGAT 1 cut(s) 191
Csp6I GTAC 1 cut(s) 920
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 6 cut(s) 74, 84, 146, 341, 370, 463
CviQI GTAC 1 cut(s) 920
DdeI CTNAG 6 cut(s) 429, 509, 519, 749, 762, 795
DinI GGCGCC 1 cut(s) 174
DpnI GATC 6 cut(s) 31, 116, 190, 476, 742, 879
DpnII GATC 6 cut(s) 29, 114, 188, 474, 740, 877
DraI TTTAAA 1 cut(s) 459
EaeI YGGCCR 3 cut(s) 20, 543, 564
EagI CGGCCG 2 cut(s) 543, 564
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
EciI GGCGGA 1 cut(s) 42
EclXI CGGCCG 2 cut(s) 543, 564
Eco130I CCWWGG 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 152
Eco52I CGGCCG 2 cut(s) 543, 564
Eco57I CTGAAG 3 cut(s) 601, 693, 956
Eco72I CACGTG 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 772
Eco91I GGTNACC 1 cut(s) 12
EcoO65I GGTNACC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 314
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 6 cut(s) 77, 87, 149, 344, 373, 466
FaiI YATR 7 cut(s) 75, 85, 147, 342, 371, 464, 756
FaqI GGGAC 2 cut(s) 266, 730
FatI CATG 6 cut(s) 73, 83, 145, 340, 369, 462
FbaI TGATCA 1 cut(s) 474
FokI GGATG 5 cut(s) 437, 464, 484, 598, 885
FspBI CTAG 4 cut(s) 666, 819, 977, 1015
GlaI GCGC 1 cut(s) 174
GsaI CCCAGC 1 cut(s) 984
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 4 cut(s) 22, 545, 566, 777
HapII CCGG 4 cut(s) 159, 213, 546, 648
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 6 cut(s) 77, 87, 149, 344, 373, 466
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 2 cut(s) 58, 892
HindII GTYRAC 2 cut(s) 58, 892
HindIII AAGCTT 4 cut(s) 68, 443, 511, 613
HpaII CCGG 4 cut(s) 159, 213, 546, 648
HphI GGTGA 3 cut(s) 6, 133, 248
Hpy166II GTNNAC 2 cut(s) 58, 892
Hpy188I TCNGA 8 cut(s) 201, 267, 527, 574, 620, 700, 882, 936
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 2 cut(s) 58, 892
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 2 cut(s) 337, 461
HpyCH4III ACNGT 2 cut(s) 18, 924
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 353, 965
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 410
HpyF3I CTNAG 6 cut(s) 429, 509, 519, 749, 762, 795
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 6 cut(s) 77, 87, 149, 344, 373, 466
HspAI GCGC 1 cut(s) 173
KasI GGCGCC 1 cut(s) 172
Kpn2I TCCGGA 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 6 cut(s) 29, 114, 188, 474, 740, 877
LweI GCATC 2 cut(s) 415, 974
MaeI CTAG 4 cut(s) 666, 819, 977, 1015
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 4 cut(s) 12, 365, 658, 668
MalI GATC 6 cut(s) 31, 116, 190, 476, 742, 879
MbiI CCGCTC 1 cut(s) 297
MboI GATC 6 cut(s) 29, 114, 188, 474, 740, 877
MboII GAAGA 6 cut(s) 430, 569, 699, 793, 843, 949
MflI RGATCY 1 cut(s) 877
MlsI TGGCCA 1 cut(s) 22
MluCI AATT 4 cut(s) 277, 356, 454, 960
MluNI TGGCCA 1 cut(s) 22
Mly113I GGCGCC 1 cut(s) 173
MlyI GAGTC 6 cut(s) 533, 554, 578, 666, 754, 764
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 9 cut(s) 30, 33, 112, 143, 281, 378, 514, 587, 849
Mox20I TGGCCA 1 cut(s) 22
MroI TCCGGA 1 cut(s) 158
MroXI GAANNNNTTC 2 cut(s) 412, 643
MscI TGGCCA 1 cut(s) 22
MseI TTAA 2 cut(s) 458, 689
MslI CAYNNNNRTG 1 cut(s) 903
Msp20I TGGCCA 1 cut(s) 22
MspI CCGG 4 cut(s) 159, 213, 546, 648
MspR9I CCNGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 172, 410
NarI GGCGCC 1 cut(s) 173
NdeII GATC 6 cut(s) 29, 114, 188, 474, 740, 877
NlaIII CATG 6 cut(s) 77, 87, 149, 344, 373, 466
NlaIV GGNNCC 2 cut(s) 136, 174
NmeAIII GCCGAG 3 cut(s) 521, 542, 592
NmuCI GTSAC 4 cut(s) 12, 365, 658, 668
NspV TTCGAA 1 cut(s) 416
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 2 cut(s) 412, 643
PfeI GAWTC 7 cut(s) 433, 488, 549, 680, 695, 908, 940
PflFI GACNNNGTC 1 cut(s) 656
PinAI ACCGGT 1 cut(s) 212
Ple19I CGATCG 1 cut(s) 191
PleI GAGTC 6 cut(s) 533, 554, 577, 665, 754, 764
PluTI GGCGCC 1 cut(s) 176
PmaCI CACGTG 1 cut(s) 49
PmlI CACGTG 1 cut(s) 49
PpsI GAGTC 6 cut(s) 533, 554, 577, 665, 754, 764
Ppu21I YACGTR 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 22
PspCI CACGTG 1 cut(s) 49
PspEI GGTNACC 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 980
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 136, 174
PspPI GGNCC 2 cut(s) 152, 775
PstNI CAGNNNCTG 1 cut(s) 922
PsuI RGATCY 1 cut(s) 877
PsyI GACNNNGTC 1 cut(s) 656
PvuI CGATCG 1 cut(s) 191
RsaI GTAC 1 cut(s) 921
RsaNI GTAC 1 cut(s) 920
RseI CAYNNNNRTG 1 cut(s) 903
SaqAI TTAA 2 cut(s) 458, 689
Sau3AI GATC 6 cut(s) 29, 114, 188, 474, 740, 877
Sau96I GGNCC 2 cut(s) 152, 775
SchI GAGTC 6 cut(s) 533, 554, 578, 666, 754, 764
ScrFI CCNGG 1 cut(s) 24
SfaNI GCATC 2 cut(s) 415, 974
SfoI GGCGCC 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 416
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 903
Sse9I AATT 4 cut(s) 277, 356, 454, 960
SsiI CCGC 3 cut(s) 27, 297, 374
SspDI GGCGCC 1 cut(s) 172
SspMI CTAG 4 cut(s) 666, 819, 977, 1015
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 18, 924
TaiI ACGT 1 cut(s) 51
TaqI TCGA 8 cut(s) 117, 191, 392, 416, 486, 555, 592, 864
TaqII GACCGA 1 cut(s) 669
TasI AATT 4 cut(s) 277, 356, 454, 960
TfiI GAWTC 7 cut(s) 433, 488, 549, 680, 695, 908, 940
Tru1I TTAA 2 cut(s) 458, 689
Tru9I TTAA 2 cut(s) 458, 689
TscAI CASTG 1 cut(s) 910
TseFI GTSAC 4 cut(s) 12, 365, 658, 668
Tsp45I GTSAC 4 cut(s) 12, 365, 658, 668
TspDTI ATGAA 5 cut(s) 20, 62, 72, 410, 732
TspGWI ACGGA 4 cut(s) 144, 198, 689, 746
TspRI CASTG 1 cut(s) 910
Tth111I GACNNNGTC 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 454
XmnI GAANNNNTTC 2 cut(s) 412, 643
XspI CTAG 4 cut(s) 666, 819, 977, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.