Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009226

Physical Location & Seq

Genomic Coordinates Forward (+)

7645436 .. 7647662

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11310.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAAGTGGTCGCCGTGGCCGTCAGGCGGAACAAAGAGGTTTCAAGTGAAGGTGAGCCAGCTGAAGCTGCAAGGGTTTAATTTTGAGAAGGAGAAGGATAGTGTTGGTGTGATTGAGGTGAAATGGAAAGGGTCTAAGCCTGGAGGGCCTGGAGTTTTGGTTCCATTCTATGGAAGAAGATCGTCGAGGCAGCCGAAAAACTACACCAGCCAGAGATTTTTGAGTCGTCAAGTCATTGAATGGGATGATGAATTTCAGAGCCTCTGTAATTTTGGGTCGAAGCAAGGTGGGAACTTTAGTCCCTGGGATTTGACTTTTACCCTGTTACACGGAGAGAGTGCGGAGCAAAAGAGTAATATGGCGGTTTTTGGGACGGTTTCGTTGAACCTAGCAGAATTGGCATCGACAATGGAGTCTCAGATTCAGAGGAAGCTCTCTGTTACTTTGAAAATGGAGGGGACGACTCCCAGCGAAGCTACCCTTTTGGTTTGTCTAAGCTTTGCTGAGGTGAGAAACTTGCATGACTCGGCAGCACTCGGTCAAGACTCGAACGAGTCAGACAAGGGCAAGTTGGTTCGAAGAGTAAGCTACTTCAGGAGCTTTAGGAAGTCAAGCAATGAGAAGAAGAGTAGTGAGGACCGAGGCATGAGTGACCGGGACGAGTCATTCTTGTCCGACTCAGAAGGGTCACCGGGGAATGGACTCGTTAACAGTGGTGTCAATGCAGATTTGAGTTCAAAGGGAGAGTCAGGATCGGTCCTGAGTCATGAGACTCAGTTTGACTCGGGGCAGAAGAGTTGGCTCTCGAGGAAGAGGAAGTGGTTGAATGGAAGACCACCTAGGAGAAAAGTGGAGCCCTTTGTTGAGAAGACTAGTAGGGACAATGCAGTGCAAATTTCCGTTGACAACAATCTCAGTGATTCTATAAAGATATCAAATTGTACTGCTGAACGTTCTTCACAATCAGATCATGAGCATGGAAAATGCACCACAAATTGCTGGGAAGAAAGGGAAGTAGAAAGCAGAGATGGGCAAGCAAAGCTCAAAACCAATGCGTTTTTTGCGTCCTTTGATCAACGGAGTGAAAAGGCCGCCGGAGAGAGTGCCTGCACAGCCCTTGTTGCGGTCATTGCACACTGGCTGCATTCGCACCAACACTCAATGCCTACAAGATCCAAATTCGACAGCCTCATCACACAAGGTTCCTCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

405

Amino Acids

44.96

Weight (kDa)

8.88

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25460 AT2G25460
fragaria_vesca	FvH4_2g29030
malus_domestica	MD00G1144300.v1.1 MD08G1150600.v1.1
prunus_persica	Prupe.1G481200_v2.0.a1
pyrus_communis	pycom08g12690 pycom15g11310 pycom15g11320
rosa_chinensis	RchiOBHm_Chr6g0297901
rosa_laevigata	RLG00000011552
rosa_multiflora	Rmu_co8393369.1_g000002 Rmu_sc0011097.1_g000011
rosa_roxburghii	Rroxscaffold_7G00170090 Rroxscaffold_7G00170100 Rroxscaffold_7G00178970
rosa_rugosa	Rorug06G0276800
rosa_samantha	Rh6AG387300 Rh6BG395700 Rh6CG401500 Rh6DG388000
rosa_wichuraiana	Rw6G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	5 cut(s)	27, 341, 362, 1092, 1124
AclI	AACGTT	1 cut(s)	952
AclWI	GGATC	2 cut(s)	760, 1167
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	3 cut(s)	251, 894, 1178
AcuI	CTGAAG	2 cut(s)	83, 577
AfaI	GTAC	1 cut(s)	943
AfiI	CCNNNNNNNGG	4 cut(s)	26, 170, 698, 1123
AgsI	TTSAA	6 cut(s)	44, 239, 385, 448, 738, 826
AhlI	ACTAGT	1 cut(s)	872
AjnI	CCWGG	3 cut(s)	139, 148, 302
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	8 cut(s)	61, 67, 433, 476, 498, 588, 600, 1042
AluI	AGCT	8 cut(s)	61, 67, 433, 476, 498, 588, 600, 1042
Alw26I	GTCTC	2 cut(s)	420, 764
AlwI	GGATC	2 cut(s)	760, 1167
Ama87I	CYCGRG	2 cut(s)	784, 805
AoxI	GGCC	3 cut(s)	17, 146, 1089
ApeKI	GCWGC	4 cut(s)	67, 190, 530, 1141
ApoI	RAATTY	3 cut(s)	251, 894, 1178
ArsI	GACNNNNNNTTYG	2 cut(s)	731, 763
AspA2I	CCTAGG	1 cut(s)	839
AspS9I	GGNCC	3 cut(s)	146, 637, 757
AsuC2I	CCSGG	2 cut(s)	656, 693
AsuHPI	GGTGA	4 cut(s)	64, 130, 520, 681
AsuII	TTCGAA	1 cut(s)	577
AvaI	CYCGRG	2 cut(s)	784, 805
AvaII	GGWCC	2 cut(s)	637, 757
AvrII	CCTAGG	1 cut(s)	839
BanII	GRGCYC	1 cut(s)	858
BbsI	GAAGAC	2 cut(s)	838, 875
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	4 cut(s)	54, 202, 542, 1128
BccI	CCATC	1 cut(s)	1022
BceAI	ACGGC	1 cut(s)	4
BciT130I	CCWGG	3 cut(s)	141, 150, 304
BclI	TGATCA	1 cut(s)	1072
BcnI	CCSGG	2 cut(s)	656, 693
BcoDI	GTCTC	2 cut(s)	420, 764
BcuI	ACTAGT	1 cut(s)	872
BfaI	CTAG	3 cut(s)	389, 840, 873
BglI	GCCNNNNNGGC	1 cut(s)	145
BisI	GCNGC	5 cut(s)	68, 191, 531, 1092, 1142
BlnI	CCTAGG	1 cut(s)	839
BlsI	GCNGC	5 cut(s)	69, 192, 532, 1093, 1143
Bme1390I	CCNGG	5 cut(s)	141, 150, 304, 656, 693
Bme18I	GGWCC	2 cut(s)	637, 757
BmeT110I	CYCGRG	2 cut(s)	784, 805
BmgT120I	GGNCC	3 cut(s)	146, 637, 757
BmiI	GGNNCC	3 cut(s)	162, 855, 1204
BmrFI	CCNGG	5 cut(s)	141, 150, 304, 656, 693
BmsI	GCATC	1 cut(s)	410
BpiI	GAAGAC	2 cut(s)	838, 875
BpmI	CTGGAG	2 cut(s)	162, 171
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	656, 693
BsaJI	CCNNGG	6 cut(s)	14, 302, 303, 640, 692, 839
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 170, 698, 1123
Bse1I	ACTGG	1 cut(s)	1142
Bse3DI	GCAATG	2 cut(s)	622, 1128
BseBI	CCWGG	3 cut(s)	141, 150, 304
BseDI	CCNNGG	6 cut(s)	14, 302, 303, 640, 692, 839
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	4 cut(s)	26, 170, 698, 1123
BseMI	GCAATG	2 cut(s)	622, 1128
BseMII	CTCAG	6 cut(s)	431, 495, 693, 752, 788, 928
BseNI	ACTGG	1 cut(s)	1142
BseXI	GCAGC	4 cut(s)	54, 202, 542, 1128
BseYI	CCCAGC	2 cut(s)	467, 999
BsgI	GTGCAG	1 cut(s)	1093
BshFI	GGCC	3 cut(s)	19, 148, 1091
BsiHKCI	CYCGRG	2 cut(s)	784, 805
BsiSI	CCGG	3 cut(s)	655, 692, 1095
BslFI	GGGAC	5 cut(s)	285, 385, 472, 671, 893
BslI	CCNNNNNNNGG	4 cut(s)	26, 170, 698, 1123
BsmAI	GTCTC	2 cut(s)	420, 764
BsmFI	GGGAC	5 cut(s)	285, 385, 472, 671, 893
BsmI	GAATGC	1 cut(s)	1144
BsnI	GGCC	3 cut(s)	19, 148, 1091
BsoBI	CYCGRG	2 cut(s)	784, 805
Bsp119I	TTCGAA	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp143I	GATC	5 cut(s)	179, 752, 967, 1072, 1172
BspACI	CCGC	5 cut(s)	27, 341, 362, 1092, 1124
BspANI	GGCC	3 cut(s)	19, 148, 1091
BspCNI	CTCAG	6 cut(s)	430, 496, 692, 753, 787, 927
BspHI	TCATGA	2 cut(s)	766, 970
BspLI	GGNNCC	3 cut(s)	162, 855, 1204
BspPI	GGATC	2 cut(s)	760, 1167
BspT104I	TTCGAA	1 cut(s)	577
BsrDI	GCAATG	2 cut(s)	622, 1128
BsrI	ACTGG	1 cut(s)	1142
BssECI	CCNNGG	6 cut(s)	14, 302, 303, 640, 692, 839
BssMI	GATC	5 cut(s)	179, 752, 967, 1072, 1172
BssT1I	CCWWGG	1 cut(s)	839
Bst2UI	CCWGG	3 cut(s)	141, 150, 304
Bst4CI	ACNGT	2 cut(s)	376, 713
Bst6I	CTCTTC	4 cut(s)	574, 620, 788, 806
BstBI	TTCGAA	1 cut(s)	577
BstC8I	GCNNGC	3 cut(s)	59, 1035, 1108
BstDEI	CTNAG	9 cut(s)	135, 417, 494, 504, 679, 761, 774, 914, 1207
BstDSI	CCRYGG	1 cut(s)	14
BstEII	GGTNACC	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	5 cut(s)	182, 755, 970, 1075, 1175
BstMAI	GTCTC	2 cut(s)	420, 764
BstMBI	GATC	5 cut(s)	179, 752, 967, 1072, 1172
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 145, 398, 1039, 1061, 1112, 1121, 1130, 1147
BstNI	CCWGG	3 cut(s)	141, 150, 304
BstPI	GGTNACC	1 cut(s)	687
BstSCI	CCNGG	5 cut(s)	139, 148, 302, 654, 691
BstV1I	GCAGC	4 cut(s)	54, 202, 542, 1128
BstV2I	GAAGAC	2 cut(s)	838, 875
BstX2I	RGATCY	1 cut(s)	1172
BstYI	RGATCY	1 cut(s)	1172
BsuRI	GGCC	3 cut(s)	19, 148, 1091
BtgI	CCRYGG	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	894
BtsIMutI	CAGTG	4 cut(s)	718, 894, 922, 1135
Cac8I	GCNNGC	3 cut(s)	59, 1035, 1108
CciI	TCATGA	2 cut(s)	766, 970
Cfr13I	GGNCC	3 cut(s)	146, 637, 757
CseI	GACGC	1 cut(s)	1053
Csp6I	GTAC	1 cut(s)	942
CviAII	CATG	5 cut(s)	521, 646, 767, 971, 977
CviQI	GTAC	1 cut(s)	942
DdeI	CTNAG	9 cut(s)	135, 417, 494, 504, 679, 761, 774, 914, 1207
DpnI	GATC	5 cut(s)	181, 754, 969, 1074, 1174
DpnII	GATC	5 cut(s)	179, 752, 967, 1072, 1172
DrdI	GACNNNNNNGTC	1 cut(s)	412
DseDI	GACNNNNNNGTC	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	4 cut(s)	574, 620, 788, 806
EarI	CTCTTC	4 cut(s)	574, 620, 788, 806
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	839
Eco24I	GRGCYC	1 cut(s)	858
Eco32I	GATATC	1 cut(s)	933
Eco47I	GGWCC	2 cut(s)	637, 757
Eco57I	CTGAAG	2 cut(s)	83, 577
Eco88I	CYCGRG	2 cut(s)	784, 805
Eco91I	GGTNACC	1 cut(s)	687
EcoO109I	RGGNCCY	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	687
EcoRII	CCWGG	3 cut(s)	139, 148, 302
EcoRV	GATATC	1 cut(s)	933
EcoT14I	CCWWGG	1 cut(s)	839
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	1 cut(s)	839
FaeI	CATG	5 cut(s)	524, 649, 770, 974, 980
FaiI	YATR	8 cut(s)	171, 359, 522, 647, 768, 926, 972, 978
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	5 cut(s)	285, 385, 472, 671, 893
FatI	CATG	5 cut(s)	520, 645, 766, 970, 976
FbaI	TGATCA	1 cut(s)	1072
Fnu4HI	GCNGC	5 cut(s)	68, 191, 531, 1092, 1142
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	5 cut(s)	68, 191, 531, 1092, 1142
FspBI	CTAG	3 cut(s)	389, 840, 873
GluI	GCNGC	5 cut(s)	68, 191, 531, 1092, 1142
GsaI	CCCAGC	2 cut(s)	471, 1003
GsuI	CTGGAG	2 cut(s)	162, 171
HaeIII	GGCC	3 cut(s)	19, 148, 1091
HapII	CCGG	3 cut(s)	655, 692, 1095
HgaI	GACGC	1 cut(s)	1053
Hin1II	CATG	5 cut(s)	524, 649, 770, 974, 980
HincII	GTYRAC	2 cut(s)	709, 904
HindII	GTYRAC	2 cut(s)	709, 904
HindIII	AAGCTT	1 cut(s)	496
HpaI	GTTAAC	1 cut(s)	709
HpaII	CCGG	3 cut(s)	655, 692, 1095
HphI	GGTGA	4 cut(s)	64, 130, 520, 681
Hpy166II	GTNNAC	2 cut(s)	709, 904
Hpy188I	TCNGA	8 cut(s)	258, 420, 426, 559, 676, 682, 967, 1210
Hpy188III	TCNNGA	7 cut(s)	542, 595, 750, 760, 767, 805, 971
Hpy8I	GTNNAC	2 cut(s)	709, 904
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	4 cut(s)	43, 82, 88, 677
HpyCH4III	ACNGT	2 cut(s)	376, 713
HpyCH4IV	ACGT	1 cut(s)	952
HpyCH4V	TGCA	9 cut(s)	70, 520, 725, 887, 892, 987, 1110, 1133, 1144
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 145, 398, 1039, 1061, 1112, 1121, 1130, 1147
HpyF3I	CTNAG	9 cut(s)	135, 417, 494, 504, 679, 761, 774, 914, 1207
HpySE526I	ACGT	1 cut(s)	952
Hsp92II	CATG	5 cut(s)	524, 649, 770, 974, 980
Ksp22I	TGATCA	1 cut(s)	1072
KspAI	GTTAAC	1 cut(s)	709
Kzo9I	GATC	5 cut(s)	179, 752, 967, 1072, 1172
LmnI	GCTCC	3 cut(s)	343, 597, 853
Lsp1109I	GCAGC	4 cut(s)	54, 202, 542, 1128
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	3 cut(s)	389, 840, 873
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	4 cut(s)	324, 439, 650, 687
MalI	GATC	5 cut(s)	181, 754, 969, 1074, 1174
MboI	GATC	5 cut(s)	179, 752, 967, 1072, 1172
MflI	RGATCY	1 cut(s)	1172
MhlI	GDGCHC	1 cut(s)	858
MluCI	AATT	8 cut(s)	79, 251, 268, 395, 894, 937, 994, 1178
MmeI	TCCRAC	1 cut(s)	699
MseI	TTAA	2 cut(s)	78, 708
MslI	CAYNNNNRTG	1 cut(s)	975
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	3 cut(s)	655, 692, 1095
MspR9I	CCNGG	5 cut(s)	141, 150, 304, 656, 693
Mva1269I	GAATGC	1 cut(s)	1144
MvaI	CCWGG	3 cut(s)	141, 150, 304
MwoI	GCNNNNNNNGC	9 cut(s)	67, 145, 398, 1039, 1061, 1112, 1121, 1130, 1147
NciI	CCSGG	2 cut(s)	656, 693
NdeII	GATC	5 cut(s)	179, 752, 967, 1072, 1172
NlaIII	CATG	5 cut(s)	524, 649, 770, 974, 980
NlaIV	GGNNCC	3 cut(s)	162, 855, 1204
NmeAIII	GCCGAG	1 cut(s)	506
NmuCI	GTSAC	2 cut(s)	650, 687
NspV	TTCGAA	1 cut(s)	577
PaeR7I	CTCGAG	1 cut(s)	805
PagI	TCATGA	2 cut(s)	766, 970
PasI	CCCWGGG	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 191
PctI	GAATGC	1 cut(s)	1144
PfeI	GAWTC	2 cut(s)	421, 920
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	5 cut(s)	69, 192, 532, 1093, 1143
Psp1406I	AACGTT	1 cut(s)	952
Psp6I	CCWGG	3 cut(s)	139, 148, 302
PspEI	GGTNACC	1 cut(s)	687
PspFI	CCCAGC	2 cut(s)	467, 999
PspGI	CCWGG	3 cut(s)	139, 148, 302
PspN4I	GGNNCC	3 cut(s)	162, 855, 1204
PspPI	GGNCC	3 cut(s)	146, 637, 757
PsuI	RGATCY	1 cut(s)	1172
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	943
RsaNI	GTAC	1 cut(s)	942
RseI	CAYNNNNRTG	1 cut(s)	975
SaqAI	TTAA	2 cut(s)	78, 708
SatI	GCNGC	5 cut(s)	68, 191, 531, 1092, 1142
Sau3AI	GATC	5 cut(s)	179, 752, 967, 1072, 1172
Sau96I	GGNCC	3 cut(s)	146, 637, 757
ScrFI	CCNGG	5 cut(s)	141, 150, 304, 656, 693
SduI	GDGCHC	1 cut(s)	858
SfaNI	GCATC	1 cut(s)	410
Sfr274I	CTCGAG	1 cut(s)	805
SfuI	TTCGAA	1 cut(s)	577
SinI	GGWCC	2 cut(s)	637, 757
SlaI	CTCGAG	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
SpeI	ACTAGT	1 cut(s)	872
Sse9I	AATT	8 cut(s)	79, 251, 268, 395, 894, 937, 994, 1178
SsiI	CCGC	5 cut(s)	27, 341, 362, 1092, 1124
SspMI	CTAG	3 cut(s)	389, 840, 873
StyD4I	CCNGG	5 cut(s)	139, 148, 302, 654, 691
StyI	CCWWGG	1 cut(s)	839
TaaI	ACNGT	2 cut(s)	376, 713
TaiI	ACGT	1 cut(s)	955
TaqI	TCGA	7 cut(s)	185, 278, 404, 548, 577, 806, 1182
TaqII	GACCGA	3 cut(s)	527, 654, 745
TasI	AATT	8 cut(s)	79, 251, 268, 395, 894, 937, 994, 1178
TatI	WGTACW	1 cut(s)	941
TauI	GCSGC	1 cut(s)	1094
TfiI	GAWTC	2 cut(s)	421, 920
Tru1I	TTAA	2 cut(s)	78, 708
Tru9I	TTAA	2 cut(s)	78, 708
TscAI	CASTG	4 cut(s)	718, 894, 922, 1142
TseFI	GTSAC	2 cut(s)	650, 687
TseI	GCWGC	4 cut(s)	67, 190, 530, 1141
Tsp45I	GTSAC	2 cut(s)	650, 687
TspDTI	ATGAA	2 cut(s)	17, 264
TspGWI	ACGGA	3 cut(s)	345, 889, 1093
TspRI	CASTG	4 cut(s)	718, 894, 922, 1142
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	637, 757
XapI	RAATTY	3 cut(s)	251, 894, 1178
XhoI	CTCGAG	1 cut(s)	805
XmaJI	CCTAGG	1 cut(s)	839
XspI	CTAG	3 cut(s)	389, 840, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.