Prupe.1G498100_v2.0.a1

Protein of unknown function (DUF740)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014253
Physical Location & Seq
Reverse (-)
41267706 .. 41270163
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G498100.1

Sequence Viewer

Length: 885 bp
ATGATCACCTCCGTTGATCTAAAATTTTTCCCAACTATAAATGACGACTTCCACAATATATACACACAACACGTATTCCCACTTCTCGGACACAGAGCAGAGCAGAACAGAGAACAGAACAGAACAGAACCTATTCTTTCTTTTCAAGTCACAAAATTTTTTTCCCTTTCCTTTTCGCTTTTCTTTTTCACCTTTCTCATCAATCAAACCCTCAACTCTTCTCAACAAACCAATTCTCTCAGCCTTAACATGAATGGGCATTTTGAAGACAACTCCTATTGCTATTTCCACCCAAAGGAGGTGGTTGTGGGTGTTTGCTCTCTGTGCTTGACCGAGAAGCTTCTCATCTTGGCTGCAAAAAAGGGCCACCATGTTTCTTCAGCCAGTGGCAGAGCTAGTGCTCATAGAACTCCGAGTGGCATGCACAAGAAGCCACCCATTAGCCTCCCCAAGATCTTTGCTTTCAGCTCTTTCTTCAATCGACAGTGGAAGCCAAATTACTTGGATCAAGAGGCCTCCACCAGCCAAGAAGACTCGTTCATATCAATCAAGTTTGAAGAGAATGGAGTTGCCTCATGGGAGAAGAACAGAGTGTCTAAGGTCTCTCTAGAGCATTGCAACATGTCCTGGAATCACAACTTCAGCAAGGAAGCTAAGGAAGCTAAGGAGGTCAGGGAGGCTAAGGACACCAAGAGTGTGATAGAGCATGGGAAATCCCATACGCCGCTTAGGTGGCGGAAGAGGATAGGGCACTTGTTCCAGCTCATCAGATGGAAGAGGTCCAACAAGGGCAATGTGTGCCATGTGAGCAGCAAGGTGGAAGGAGTCAAGGTAAGGAAGGGTTGGATAAGAACCCTGACAAAGAGAAGGGGGGCCATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

295

Amino Acids

33.96

Weight (kDa)

9.8

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014253)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21830
fragaria_vesca FvH4_2g26860
malus_domestica MD08G1163000.v1.1 MD15G1349700.v1.1
prunus_persica Prupe.1G498100_v2.0.a1
pyrus_communis pycom08g14080 pycom15g31280
rosa_chinensis RchiOBHm_Chr6g0295711
rosa_laevigata RLG00000011773
rosa_multiflora Rmu_sc0007372.1_g000002
rosa_roxburghii Rroxscaffold_7G00172190
rosa_rugosa Rorug06G0253700
rosa_samantha Rh6AG367100 Rh6BG374900 Rh6CG381200 Rh6DG368000
rosa_wichuraiana Rw6G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 725, 736
AclWI GGATC 1 cut(s) 513
AcsI RAATTY 2 cut(s) 23, 155
AcuI CTGAAG 2 cut(s) 363, 625
AfiI CCNNNNNNNGG 3 cut(s) 86, 295, 298
AflIII ACRYGT 2 cut(s) 70, 621
AgsI TTSAA 4 cut(s) 146, 266, 478, 557
AjnI CCWGG 1 cut(s) 626
AluBI AGCT 6 cut(s) 340, 395, 468, 653, 662, 763
AluI AGCT 6 cut(s) 340, 395, 468, 653, 662, 763
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 607
AlwI GGATC 1 cut(s) 513
AoxI GGCC 3 cut(s) 364, 513, 873
ApeKI GCWGC 2 cut(s) 353, 810
ApoI RAATTY 2 cut(s) 23, 155
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 3 cut(s) 364, 780, 873
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 780
BaeGI GKGCMC 1 cut(s) 753
BarI GAAGNNNNNNTAC 4 cut(s) 66, 98, 482, 514
BbsI GAAGAC 2 cut(s) 273, 537
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 2 cut(s) 340, 822
BccI CCATC 1 cut(s) 765
BcgI CGANNNNNNTGC 2 cut(s) 403, 437
BciT130I CCWGG 1 cut(s) 628
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 607
BfaI CTAG 2 cut(s) 396, 608
BglII AGATCT 1 cut(s) 453
BisI GCNGC 3 cut(s) 354, 725, 811
BlsI GCNGC 3 cut(s) 355, 726, 812
Bme1390I CCNGG 1 cut(s) 628
Bme18I GGWCC 1 cut(s) 780
BmgT120I GGNCC 3 cut(s) 364, 780, 873
BmiI GGNNCC 1 cut(s) 874
BmrFI CCNGG 1 cut(s) 628
BpiI GAAGAC 2 cut(s) 273, 537
Bpu10I CCTNAGC 4 cut(s) 654, 663, 681, 728
BsaAI YACGTR 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 1 cut(s) 876
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 295, 298
Bse1I ACTGG 1 cut(s) 384
Bse3DI GCAATG 2 cut(s) 613, 799
BseBI CCWGG 1 cut(s) 628
BseDI CCNNGG 1 cut(s) 876
BseLI CCNNNNNNNGG 3 cut(s) 86, 295, 298
BseMI GCAATG 2 cut(s) 613, 799
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 384
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 2 cut(s) 340, 822
BshFI GGCC 3 cut(s) 366, 515, 875
BsiHKAI GWGCWC 1 cut(s) 403
BslI CCNNNNNNNGG 3 cut(s) 86, 295, 298
BsmAI GTCTC 1 cut(s) 607
BsnI GGCC 3 cut(s) 366, 515, 875
Bso31I GGTCTC 1 cut(s) 607
Bsp1286I GDGCHC 2 cut(s) 403, 753
Bsp143I GATC 4 cut(s) 3, 16, 453, 505
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 2 cut(s) 725, 736
BspANI GGCC 3 cut(s) 366, 515, 875
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 874
BspPI GGATC 1 cut(s) 513
BspTNI GGTCTC 1 cut(s) 607
BsrDI GCAATG 2 cut(s) 613, 799
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 4 cut(s) 3, 16, 453, 505
BssT1I CCWWGG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 1 cut(s) 486
Bst6I CTCTTC 4 cut(s) 223, 552, 734, 770
BstAPI GCANNNNNTGC 1 cut(s) 798
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 6 cut(s) 239, 597, 654, 663, 681, 728
BstDSI CCRYGG 1 cut(s) 876
BstKTI GATC 4 cut(s) 6, 19, 456, 508
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 4 cut(s) 3, 16, 453, 505
BstMWI GCNNNNNNNGC 6 cut(s) 324, 430, 659, 733, 798, 807
BstNI CCWGG 1 cut(s) 628
BstNSI RCATGY 2 cut(s) 424, 625
BstSCI CCNGG 1 cut(s) 626
BstSLI GKGCMC 1 cut(s) 753
BstV1I GCAGC 2 cut(s) 340, 822
BstV2I GAAGAC 2 cut(s) 273, 537
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
BsuRI GGCC 3 cut(s) 366, 515, 875
BtgI CCRYGG 1 cut(s) 876
BtsIMutI CAGTG 2 cut(s) 391, 491
Cac8I GCNNGC 1 cut(s) 422
Cfr13I GGNCC 3 cut(s) 364, 780, 873
CspCI CAANNNNNGTGG 2 cut(s) 282, 317
CviAII CATG 8 cut(s) 250, 371, 421, 576, 622, 707, 803, 877
DdeI CTNAG 6 cut(s) 239, 597, 654, 663, 681, 728
DpnI GATC 4 cut(s) 5, 18, 455, 507
DpnII GATC 4 cut(s) 3, 16, 453, 505
Eam1104I CTCTTC 4 cut(s) 223, 552, 734, 770
EarI CTCTTC 4 cut(s) 223, 552, 734, 770
EciI GGCGGA 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 876
Eco147I AGGCCT 1 cut(s) 515
Eco31I GGTCTC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 780
Eco57I CTGAAG 2 cut(s) 363, 625
EcoRII CCWGG 1 cut(s) 626
EcoT14I CCWWGG 1 cut(s) 876
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 8 cut(s) 253, 374, 424, 579, 625, 710, 806, 880
FatI CATG 8 cut(s) 249, 370, 420, 575, 621, 706, 802, 876
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 354, 725, 811
Fsp4HI GCNGC 3 cut(s) 354, 725, 811
FspBI CTAG 2 cut(s) 396, 608
GluI GCNGC 3 cut(s) 354, 725, 811
HaeIII GGCC 3 cut(s) 366, 515, 875
Hin1II CATG 8 cut(s) 253, 374, 424, 579, 625, 710, 806, 880
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 3 cut(s) 533, 631, 825
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 89, 414, 770
Hpy188III TCNNGA 2 cut(s) 509, 608
HpyAV CCTTC 3 cut(s) 815, 832, 861
HpyCH4III ACNGT 1 cut(s) 486
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 356, 424, 618
HpyF10VI GCNNNNNNNGC 6 cut(s) 324, 430, 659, 733, 798, 807
HpyF3I CTNAG 6 cut(s) 239, 597, 654, 663, 681, 728
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 8 cut(s) 253, 374, 424, 579, 625, 710, 806, 880
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 16, 453, 505
LpnPI CCDG 7 cut(s) 397, 535, 613, 640, 658, 773, 869
Lsp1109I GCAGC 2 cut(s) 340, 822
MaeI CTAG 2 cut(s) 396, 608
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 148
MalI GATC 4 cut(s) 5, 18, 455, 507
MboI GATC 4 cut(s) 3, 16, 453, 505
MboII GAAGA 9 cut(s) 210, 278, 369, 466, 542, 569, 595, 751, 787
MflI RGATCY 1 cut(s) 453
MhlI GDGCHC 2 cut(s) 403, 753
MluCI AATT 4 cut(s) 23, 155, 232, 496
MlyI GAGTC 2 cut(s) 527, 834
MmeI TCCRAC 2 cut(s) 807, 824
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 628
MvaI CCWGG 1 cut(s) 628
MwoI GCNNNNNNNGC 6 cut(s) 324, 430, 659, 733, 798, 807
NcoI CCATGG 1 cut(s) 876
NdeII GATC 4 cut(s) 3, 16, 453, 505
NlaIII CATG 8 cut(s) 253, 374, 424, 579, 625, 710, 806, 880
NlaIV GGNNCC 1 cut(s) 874
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 2 cut(s) 424, 625
PaeI GCATGC 1 cut(s) 424
PceI AGGCCT 1 cut(s) 515
PciI ACATGT 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 631
PfoI TCCNGGA 1 cut(s) 626
PkrI GCNGC 3 cut(s) 355, 726, 812
PleI GAGTC 2 cut(s) 527, 833
PpsI GAGTC 2 cut(s) 527, 833
Ppu21I YACGTR 1 cut(s) 73
PscI ACATGT 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 626
PspGI CCWGG 1 cut(s) 626
PspN4I GGNNCC 1 cut(s) 874
PspPI GGNCC 3 cut(s) 364, 780, 873
PsuI RGATCY 1 cut(s) 453
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 3 cut(s) 354, 725, 811
Sau3AI GATC 4 cut(s) 3, 16, 453, 505
Sau96I GGNCC 3 cut(s) 364, 780, 873
SchI GAGTC 2 cut(s) 527, 834
ScrFI CCNGG 1 cut(s) 628
SduI GDGCHC 2 cut(s) 403, 753
SinI GGWCC 1 cut(s) 780
SphI GCATGC 1 cut(s) 424
Sse9I AATT 4 cut(s) 23, 155, 232, 496
SseBI AGGCCT 1 cut(s) 515
SsiI CCGC 2 cut(s) 725, 736
SspMI CTAG 2 cut(s) 396, 608
StuI AGGCCT 1 cut(s) 515
StyD4I CCNGG 1 cut(s) 626
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 1 cut(s) 486
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 481
TaqII GACCGA 1 cut(s) 347
TasI AATT 4 cut(s) 23, 155, 232, 496
TauI GCSGC 1 cut(s) 727
TfiI GAWTC 1 cut(s) 631
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 2 cut(s) 391, 491
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 353, 810
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 266, 529
TspRI CASTG 2 cut(s) 391, 491
VpaK11BI GGWCC 1 cut(s) 780
XapI RAATTY 2 cut(s) 23, 155
XbaI TCTAGA 1 cut(s) 607
XceI RCATGY 2 cut(s) 424, 625
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 2 cut(s) 396, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.