Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0014253

Physical Location & Seq

Genomic Coordinates Reverse (-)

13124689 .. 13127439

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGTCTGTAGCATACATTCAATTCCAAGTATTATATTGGCCAAAATTGATTTGTGGGCCAACCCCGTGATCACCTCCGTTAATCTAAAAATTTTCCAGACTATAAATGCCTTCCTACACACACATTACACGCACAAACAGTTATTCTTCTCTCACACTTCTCCCACAAACACAGAAAAACACAAGACAACACAACACAGAAGACACAACCTTTTCTTTCTTTCCAAGTCACAAATTTTTCTCACTTTTTCGGTTTTTCCCCTTCTTTTTCCACCTTTCTCATCAACTCCCTCAAACCCTAATTCTAACATGAATGGGTACAAAGAAGACACCTCCTTTTGCTATTTCCACCCCAAAGAGCTTGTTGTGGGGGTCTGCTCCCTCTGCCTGACCGAGAGGCTTCTAATCTTGGCTTCCAAAAAAGGCCACCACCACCACCGCCACCATATCTCCTCCGTCGGAGGCGGCAGTGCCCATAAAAACCCAAATGGTATGCACAAGAAGGTACCCATTAGCCTCCCCAAGATCTTTGCTTTCAGCTCTCTCCTCAATCGGCAGGGGAAACCAGACGACGGCTCAGATCAAGAGGCTTCCACCAGCCAAGAAGACTCATTCATATCAATCAAGTTTGAAGACAATGGAGTGGCCTCATGGGAAAAGAACAAAGTGTCTAAGGTCTCTCTAGATCATTGCAACATGTCCTGGAATCACAACCTGAGCAAGGAAGCCAAGGAAACAAAGGAGGCAAAGGATAGCAAGAGCGTGATAGAGCACGGGAAATCCCACATCCCGCTCAGTTGGCGGAAGAGGATTGGTCACTTGGCCCAGCTCATCAGATGGAAGAGGTCGAACAAGGGCAGTGTGTGTCATGTCGGCAACAAGGCGGAGGGAGTCAAGGTAAGGAAGGGTTGGATAAGAAACCTGACAAAGAGGAGAGGGGCCATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

317

Amino Acids

35.8

Weight (kDa)

9.9

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21830
fragaria_vesca	FvH4_2g26860
malus_domestica	MD08G1163000.v1.1 MD15G1349700.v1.1
prunus_persica	Prupe.1G498100_v2.0.a1
pyrus_communis	pycom08g14080 pycom15g31280
rosa_chinensis	RchiOBHm_Chr6g0295711
rosa_laevigata	RLG00000011773
rosa_multiflora	Rmu_sc0007372.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172190
rosa_rugosa	Rorug06G0253700
rosa_samantha	Rh6AG367100 Rh6BG374900 Rh6CG381200 Rh6DG368000
rosa_wichuraiana	Rw6G032040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	505
AccBSI	CCGCTC	1 cut(s)	793
AciI	CCGC	5 cut(s)	439, 465, 791, 802, 884
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	90, 234
AfaI	GTAC	2 cut(s)	320, 507
AfiI	CCNNNNNNNGG	2 cut(s)	572, 721
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	2 cut(s)	21, 632
AjnI	CCWGG	1 cut(s)	701
AluBI	AGCT	3 cut(s)	361, 540, 829
AluI	AGCT	3 cut(s)	361, 540, 829
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	1 cut(s)	682
AoxI	GGCC	6 cut(s)	39, 57, 424, 645, 822, 939
ApoI	RAATTY	2 cut(s)	90, 234
Asp718I	GGTACC	1 cut(s)	505
AspS9I	GGNCC	3 cut(s)	57, 823, 939
AsuHPI	GGTGA	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	505
BbsI	GAAGAC	4 cut(s)	208, 333, 612, 639
Bbv12I	GWGCWC	1 cut(s)	774
BccI	CCATC	1 cut(s)	831
BceAI	ACGGC	1 cut(s)	589
BciT130I	CCWGG	1 cut(s)	703
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	1 cut(s)	7
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	703
BmgT120I	GGNCC	3 cut(s)	57, 823, 939
BmiI	GGNNCC	2 cut(s)	507, 940
BmrFI	CCNGG	1 cut(s)	703
BpiI	GAAGAC	4 cut(s)	208, 333, 612, 639
Bpu10I	CCTNAGC	1 cut(s)	716
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	2 cut(s)	729, 942
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 882, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 721
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	703
BseDI	CCNNGG	2 cut(s)	729, 942
BseGI	GGATG	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	572, 721
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	3 cut(s)	591, 707, 808
BseRI	GAGGAG	3 cut(s)	442, 536, 946
BseSI	GKGCMC	1 cut(s)	475
BseYI	CCCAGC	1 cut(s)	825
BshFI	GGCC	6 cut(s)	41, 59, 426, 647, 824, 941
BshNI	GGYRCC	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	774
BslI	CCNNNNNNNGG	2 cut(s)	572, 721
BsmAI	GTCTC	1 cut(s)	682
BsnI	GGCC	6 cut(s)	41, 59, 426, 647, 824, 941
Bso31I	GGTCTC	1 cut(s)	682
Bsp1286I	GDGCHC	2 cut(s)	475, 774
Bsp143I	GATC	4 cut(s)	69, 525, 580, 685
Bsp19I	CCATGG	1 cut(s)	942
BspACI	CCGC	5 cut(s)	439, 465, 791, 802, 884
BspANI	GGCC	6 cut(s)	41, 59, 426, 647, 824, 941
BspCNI	CTCAG	3 cut(s)	590, 708, 807
BspLI	GGNNCC	2 cut(s)	507, 940
BspT107I	GGYRCC	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	682
BsrBI	CCGCTC	1 cut(s)	793
BsrDI	GCAATG	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	729, 942
BssMI	GATC	4 cut(s)	69, 525, 580, 685
BssT1I	CCWWGG	2 cut(s)	729, 942
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	1 cut(s)	141
Bst6I	CTCTTC	2 cut(s)	800, 836
BstDEI	CTNAG	4 cut(s)	577, 672, 716, 794
BstDSI	CCRYGG	1 cut(s)	942
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	1 cut(s)	786
BstKTI	GATC	4 cut(s)	72, 528, 583, 688
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	4 cut(s)	69, 525, 580, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 799
BstNI	CCWGG	1 cut(s)	703
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	1 cut(s)	701
BstSFI	CTRYAG	1 cut(s)	7
BstSLI	GKGCMC	1 cut(s)	475
BstV2I	GAAGAC	4 cut(s)	208, 333, 612, 639
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BsuRI	GGCC	6 cut(s)	41, 59, 426, 647, 824, 941
BtgI	CCRYGG	1 cut(s)	942
BtsCI	GGATG	1 cut(s)	786
BtsI	GCAGTG	2 cut(s)	475, 865
BtsIMutI	CAGTG	2 cut(s)	475, 865
Cfr13I	GGNCC	3 cut(s)	57, 823, 939
Csp6I	GTAC	2 cut(s)	319, 506
CviAII	CATG	5 cut(s)	310, 651, 697, 869, 943
CviQI	GTAC	2 cut(s)	319, 506
DdeI	CTNAG	4 cut(s)	577, 672, 716, 794
DpnI	GATC	4 cut(s)	71, 527, 582, 687
DpnII	GATC	4 cut(s)	69, 525, 580, 685
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	800, 836
EarI	CTCTTC	2 cut(s)	800, 836
EciI	GGCGGA	2 cut(s)	817, 899
Eco130I	CCWWGG	2 cut(s)	729, 942
Eco31I	GGTCTC	1 cut(s)	682
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	701
EcoT14I	CCWWGG	2 cut(s)	729, 942
ErhI	CCWWGG	2 cut(s)	729, 942
FaeI	CATG	5 cut(s)	313, 654, 700, 872, 946
FatI	CATG	5 cut(s)	309, 650, 696, 868, 942
FauI	CCCGC	1 cut(s)	798
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	1 cut(s)	773
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	1 cut(s)	466
GsaI	CCCAGC	1 cut(s)	829
HaeIII	GGCC	6 cut(s)	41, 59, 426, 647, 824, 941
Hin1II	CATG	5 cut(s)	313, 654, 700, 872, 946
HinfI	GANTC	3 cut(s)	608, 706, 891
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	461, 580, 836
Hpy188III	TCNNGA	3 cut(s)	97, 584, 683
Hpy99I	CGWCG	2 cut(s)	461, 575
HpyAV	CCTTC	4 cut(s)	121, 272, 496, 898
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	496, 693
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 799
HpyF3I	CTNAG	4 cut(s)	577, 672, 716, 794
Hsp92II	CATG	5 cut(s)	313, 654, 700, 872, 946
KpnI	GGTACC	1 cut(s)	509
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	69, 525, 580, 685
LmnI	GCTCC	1 cut(s)	383
MaeI	CTAG	1 cut(s)	683
MaeIII	GTNAC	2 cut(s)	228, 815
MalI	GATC	4 cut(s)	71, 527, 582, 687
MbiI	CCGCTC	1 cut(s)	793
MboI	GATC	4 cut(s)	69, 525, 580, 685
MboII	GAAGA	7 cut(s)	139, 213, 338, 617, 644, 817, 853
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	2 cut(s)	475, 774
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	5 cut(s)	21, 45, 90, 234, 301
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	602, 900
MmeI	TCCRAC	2 cut(s)	439, 890
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	703
MwoI	GCNNNNNNNGC	2 cut(s)	384, 799
NcoI	CCATGG	1 cut(s)	942
NdeII	GATC	4 cut(s)	69, 525, 580, 685
NlaIII	CATG	5 cut(s)	313, 654, 700, 872, 946
NlaIV	GGNNCC	2 cut(s)	507, 940
NmuCI	GTSAC	2 cut(s)	228, 815
NspI	RCATGY	1 cut(s)	700
PciI	ACATGT	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	706
PfoI	TCCNGGA	1 cut(s)	701
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	2 cut(s)	602, 899
PpsI	GAGTC	2 cut(s)	602, 899
PscI	ACATGT	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	701
PspFI	CCCAGC	1 cut(s)	825
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	2 cut(s)	507, 940
PspPI	GGNCC	3 cut(s)	57, 823, 939
PsuI	RGATCY	1 cut(s)	525
RsaI	GTAC	2 cut(s)	320, 507
RsaNI	GTAC	2 cut(s)	319, 506
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	4 cut(s)	69, 525, 580, 685
Sau96I	GGNCC	3 cut(s)	57, 823, 939
SchI	GAGTC	2 cut(s)	602, 900
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	2 cut(s)	475, 774
SfcI	CTRYAG	1 cut(s)	7
Sse9I	AATT	5 cut(s)	21, 45, 90, 234, 301
SsiI	CCGC	5 cut(s)	439, 465, 791, 802, 884
SspMI	CTAG	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	701
StyI	CCWWGG	2 cut(s)	729, 942
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	848
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	5 cut(s)	21, 45, 90, 234, 301
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	706
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	475, 865
TseFI	GTSAC	2 cut(s)	228, 815
Tsp45I	GTSAC	2 cut(s)	228, 815
TspDTI	ATGAA	2 cut(s)	326, 604
TspGWI	ACGGA	2 cut(s)	67, 445
TspRI	CASTG	2 cut(s)	475, 865
XagI	CCTNNNNNAGG	1 cut(s)	719
XapI	RAATTY	2 cut(s)	90, 234
XbaI	TCTAGA	1 cut(s)	682
XceI	RCATGY	1 cut(s)	700
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.