Rh6DG368000

Protein of unknown function (DUF740)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014253
Physical Location & Seq
Forward (+)
56422915 .. 56423268
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG368000.1

Sequence Viewer

Length: 354 bp
ATGCAAATGTGTTTTGCAGATTCATTCATATCAATCAAGTTTGAAGAGAATGGAGTTGCCTCGTGGGAGAAGAACAAGGTATCCAAAGTCTCTTTAGACCATTGCAACATGCCCTGGAATCACAACTTTAGCAAAGACTCCAAGGATGCCAAAGAGACCAAGAGTGTGATAGAGCATGGGAAAGCTCATACACCACTTAGGTGGCGGAAGCGGATCGGACATCTCTTCCAGCTCAATAGATGGAAGAGATCCAACAAGGGCAGTGTGTGCCATGTGAGCAACAAGGTAGAAGGAGTCAAGGTAAGGAAGGGCTGGATAAGAAGTCTGACAAAGAGGAGAGGGTCCATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

117

Amino Acids

13.67

Weight (kDa)

10.22

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014253)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21830
fragaria_vesca FvH4_2g26860
malus_domestica MD08G1163000.v1.1 MD15G1349700.v1.1
prunus_persica Prupe.1G498100_v2.0.a1
pyrus_communis pycom08g14080 pycom15g31280
rosa_chinensis RchiOBHm_Chr6g0295711
rosa_laevigata RLG00000011773
rosa_multiflora Rmu_sc0007372.1_g000002
rosa_roxburghii Rroxscaffold_7G00172190
rosa_rugosa Rorug06G0253700
rosa_samantha Rh6AG367100 Rh6BG374900 Rh6CG381200 Rh6DG368000
rosa_wichuraiana Rw6G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 205, 211
AclWI GGATC 2 cut(s) 221, 243
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 1 cut(s) 113
AleI CACNNNNGTG 1 cut(s) 199
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 2 cut(s) 185, 232
AluI AGCT 2 cut(s) 185, 232
Alw26I GTCTC 2 cut(s) 94, 149
AlwI GGATC 2 cut(s) 221, 243
AspS9I GGNCC 1 cut(s) 342
AvaII GGWCC 1 cut(s) 342
BauI CACGAG 1 cut(s) 61
BccI CCATC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 115
BciVI GTATCC 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 94, 149
BfuI GTATCC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 113, 141, 345
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 113, 141, 345
BseGI GGATG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 94, 149
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 213, 248
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 2 cut(s) 205, 211
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 2 cut(s) 221, 243
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 100
BssECI CCNNGG 3 cut(s) 113, 141, 345
BssMI GATC 2 cut(s) 213, 248
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 2 cut(s) 141, 345
Bst2BI CACGAG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 3 cut(s) 39, 230, 239
BstAPI GCANNNNNTGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 197
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 2 cut(s) 216, 251
BstMAI GTCTC 2 cut(s) 94, 149
BstMBI GATC 2 cut(s) 213, 248
BstMWI GCNNNNNNNGC 2 cut(s) 267, 276
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 201
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 342
CviAII CATG 4 cut(s) 109, 176, 272, 346
CviJI RGCY 3 cut(s) 185, 232, 312
CviKI_1 RGCY 3 cut(s) 185, 232, 312
DdeI CTNAG 1 cut(s) 197
DpnI GATC 2 cut(s) 215, 250
DpnII GATC 2 cut(s) 213, 248
Eam1104I CTCTTC 3 cut(s) 39, 230, 239
EarI CTCTTC 3 cut(s) 39, 230, 239
EciI GGCGGA 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 141, 345
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 141, 345
ErhI CCWWGG 2 cut(s) 141, 345
FaeI CATG 4 cut(s) 112, 179, 275, 349
FaiI YATR 6 cut(s) 29, 110, 177, 189, 273, 347
FatI CATG 4 cut(s) 108, 175, 271, 345
FokI GGATG 1 cut(s) 158
Hin1II CATG 4 cut(s) 112, 179, 275, 349
HinfI GANTC 4 cut(s) 20, 118, 137, 294
Hpy188I TCNGA 2 cut(s) 218, 327
HpyAV CCTTC 2 cut(s) 284, 301
HpyCH4V TGCA 3 cut(s) 4, 17, 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 276
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 4 cut(s) 112, 179, 275, 349
Kzo9I GATC 2 cut(s) 213, 248
LpnPI CCDG 4 cut(s) 100, 127, 242, 298
LweI GCATC 1 cut(s) 136
MalI GATC 2 cut(s) 215, 250
MboI GATC 2 cut(s) 213, 248
MboII GAAGA 4 cut(s) 56, 82, 217, 256
MflI RGATCY 1 cut(s) 248
MlyI GAGTC 2 cut(s) 131, 303
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 3 cut(s) 70, 327, 332
MslI CAYNNNNRTG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 267, 276
NcoI CCATGG 1 cut(s) 345
NdeII GATC 2 cut(s) 213, 248
NlaIII CATG 4 cut(s) 112, 179, 275, 349
NlaIV GGNNCC 1 cut(s) 343
NspI RCATGY 1 cut(s) 112
OliI CACNNNNGTG 1 cut(s) 199
PfeI GAWTC 2 cut(s) 20, 118
PleI GAGTC 2 cut(s) 131, 302
PpsI GAGTC 2 cut(s) 131, 302
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 199
Sau3AI GATC 2 cut(s) 213, 248
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 2 cut(s) 131, 303
ScrFI CCNGG 1 cut(s) 115
SetI ASST 6 cut(s) 81, 187, 203, 234, 288, 303
SfaNI GCATC 1 cut(s) 136
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 199
SsiI CCGC 2 cut(s) 205, 211
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 2 cut(s) 141, 345
TfiI GAWTC 2 cut(s) 20, 118
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 12, 16
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 342
XceI RCATGY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.