Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014253

Physical Location & Seq

Genomic Coordinates Reverse (-)

12464376 .. 12466789

Gene Structure 2414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAACATGAGCAATGGGTATAGAGAACCAGACAACTCGTTTTGCTATTTCCACCCCAAAGAGGTGGTTGTGGGGGTCTGTGCCCTGTGCTTGACTGAGAGGCTTCTCGTATTGGCTGCCAGAAAAGGCCACCATAGAAGCACCCAAAGCTTCAGTCACAGACCCATTACTCTTCCAAAGATCTTTGCTTTCAGCTCTTTCCTCAATCGGAAGCCAGATTACTTGGATCAAGAAGCTTCCACCAGCCAAGAAGATTCATTCATATCAATCAAGTTTGAAGAGAATGGAGTTGCCTCGTGGGAGAAGAACAAGGTATCCAAAGTCTCTTTAGACCATTGCAACATGCCCTGGAATCACAACTTTAGCAAAGACTCCAAGGATGCCAAGGAGACCAAGAGTGTGATAGAGCATGGGAAAGCTCATACACCACTTAGGTGGCGGAAGCGGATCGGACATCTCTTCCAGCTCAATAGATGGAAGAGATCCAACAAGGGCAGTGTGTGCCATGTGAGCAACAAGGTAGAAGGAGTCAAGGTAAGGAAGGGCTGGATAAGAAGTCTGACAAAGAGGAGAGGGTCCATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

195

Amino Acids

22.56

Weight (kDa)

9.92

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21830
fragaria_vesca	FvH4_2g26860
malus_domestica	MD08G1163000.v1.1 MD15G1349700.v1.1
prunus_persica	Prupe.1G498100_v2.0.a1
pyrus_communis	pycom08g14080 pycom15g31280
rosa_chinensis	RchiOBHm_Chr6g0295711
rosa_laevigata	RLG00000011773
rosa_multiflora	Rmu_sc0007372.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172190
rosa_rugosa	Rorug06G0253700
rosa_samantha	Rh6AG367100 Rh6BG374900 Rh6CG381200 Rh6DG368000
rosa_wichuraiana	Rw6G032040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	439, 445
AclWI	GGATC	3 cut(s)	234, 455, 477
AcuI	CTGAAG	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	347
AleI	CACNNNNGTG	1 cut(s)	433
AloI	GAACNNNNNNTCC	2 cut(s)	299, 331
AluBI	AGCT	5 cut(s)	150, 195, 236, 419, 466
AluI	AGCT	5 cut(s)	150, 195, 236, 419, 466
Alw26I	GTCTC	2 cut(s)	328, 383
AlwI	GGATC	3 cut(s)	234, 455, 477
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AspS9I	GGNCC	1 cut(s)	576
AvaII	GGWCC	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	85
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BauI	CACGAG	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	468
BciT130I	CCWGG	1 cut(s)	349
BciVI	GTATCC	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	328, 383
BfuI	GTATCC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	4 cut(s)	347, 375, 384, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	19, 334
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	4 cut(s)	347, 375, 384, 579
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	2 cut(s)	19, 334
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	583
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	328, 383
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	180, 226, 447, 482
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	2 cut(s)	439, 445
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	577
BspPI	GGATC	3 cut(s)	234, 455, 477
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	19, 334
BssECI	CCNNGG	4 cut(s)	347, 375, 384, 579
BssMI	GATC	4 cut(s)	180, 226, 447, 482
BssSI	CACGAG	1 cut(s)	295
BssT1I	CCWWGG	3 cut(s)	375, 384, 579
Bst2BI	CACGAG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	349
Bst6I	CTCTTC	4 cut(s)	177, 273, 464, 473
BstAPI	GCANNNNNTGC	1 cut(s)	501
BstDEI	CTNAG	2 cut(s)	96, 431
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	4 cut(s)	183, 229, 450, 485
BstMAI	GTCTC	2 cut(s)	328, 383
BstMBI	GATC	4 cut(s)	180, 226, 447, 482
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 501, 510
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	180, 482
BstXI	CCANNNNNNTGG	2 cut(s)	64, 435
BstYI	RGATCY	2 cut(s)	180, 482
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	576
CviAII	CATG	5 cut(s)	7, 343, 410, 506, 580
DdeI	CTNAG	2 cut(s)	96, 431
DpnI	GATC	4 cut(s)	182, 228, 449, 484
DpnII	GATC	4 cut(s)	180, 226, 447, 482
Eam1104I	CTCTTC	4 cut(s)	177, 273, 464, 473
EarI	CTCTTC	4 cut(s)	177, 273, 464, 473
EciI	GGCGGA	1 cut(s)	454
Eco130I	CCWWGG	3 cut(s)	375, 384, 579
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	3 cut(s)	375, 384, 579
ErhI	CCWWGG	3 cut(s)	375, 384, 579
FaeI	CATG	5 cut(s)	10, 346, 413, 509, 583
FaiI	YATR	9 cut(s)	8, 21, 135, 263, 344, 411, 423, 507, 581
FatI	CATG	5 cut(s)	6, 342, 409, 505, 579
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	5 cut(s)	10, 346, 413, 509, 583
HindIII	AAGCTT	2 cut(s)	148, 234
HinfI	GANTC	4 cut(s)	254, 352, 371, 528
Hpy188I	TCNGA	3 cut(s)	210, 452, 561
Hpy188III	TCNNGA	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	518, 535
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 501, 510
HpyF3I	CTNAG	2 cut(s)	96, 431
Hsp92II	CATG	5 cut(s)	10, 346, 413, 509, 583
Kzo9I	GATC	4 cut(s)	180, 226, 447, 482
LpnPI	CCDG	9 cut(s)	42, 98, 133, 228, 256, 334, 361, 476, 532
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	4 cut(s)	182, 228, 449, 484
MboI	GATC	4 cut(s)	180, 226, 447, 482
MboII	GAAGA	6 cut(s)	164, 263, 290, 316, 451, 490
MflI	RGATCY	2 cut(s)	180, 482
MhlI	GDGCHC	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	365, 537
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	6 cut(s)	55, 93, 212, 304, 561, 566
MslI	CAYNNNNRTG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	3 cut(s)	147, 501, 510
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	4 cut(s)	180, 226, 447, 482
NlaIII	CATG	5 cut(s)	10, 346, 413, 509, 583
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	254, 352
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	365, 536
PpsI	GAGTC	2 cut(s)	365, 536
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	576
PsuI	RGATCY	2 cut(s)	180, 482
RseI	CAYNNNNRTG	1 cut(s)	433
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	4 cut(s)	180, 226, 447, 482
Sau96I	GGNCC	1 cut(s)	576
SchI	GAGTC	2 cut(s)	365, 537
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	370
SinI	GGWCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	433
SsiI	CCGC	2 cut(s)	439, 445
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	3 cut(s)	375, 384, 579
TfiI	GAWTC	2 cut(s)	254, 352
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	17, 246, 250
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	576
XceI	RCATGY	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.