Prupe.1G548100_v2.0.a1

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
44830700 .. 44834704
4005 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G548100.1

Sequence Viewer

Length: 1557 bp
ATGGGTCTTCTCAACTCAGCTTCGGTTGTTGTTTGTGTTCTTGTTTGTCAACTATTTGCCTTGCATTTGGGTGATCTTGTAAGCACTGTCTCAGAGAAGTACATATCAGCAATAGGAGACCCAGGAATGAAGAACCCAAATGTGAGAGTTGCATTGGAAGCTTGGAATTTCTGCAATGAAGTTGGAATGGAAGCACCCAACATGGGCAGCCCCAGGCTGGCCGATTGTGCTGATATTGATTGCTCTCTTACTGATCATTTGGATAGGACCTCCCTAGGTATGGAAAGTAAGTGTGTGATTCATCACAGAGTAAATGAATCAGACAACAACTTACGGGCGGGTGATAATTTTCCTGTAAGGGATTTTAAGCCATACACAGACCCTGACTTATATGCAAAGGAAAAGGAACTGTATCTTGCTTCTCTATGTGAGGTTCAGAATTCATCAGATCCATGGCAATTTTGGATGGTCATGCTTAAGAACGGAAATTTTGACAAAAACACTACTCTTTGTCCTGAAAATGGCAAGCCGGTAAGCAGAATTGTTACGGATAGGAATTTTCCATGTTTTGGTCAAGGTTGTATGAATCAGCCACTTGTCTACCATAACTACTCAAGATTGATTTCTTATGGTGACCGAGCAGTGTCTTTAATTGGAGGATTTTATGGAACTTATGATCTTGATGCTGATTTGAGCAAAGGTATAGGGAAGAACTCCTACTTTTCAGTCTCATGGCAGAAAAACTTGGGCACAGGAAGTTGGATTTTCTCGCATAGATTGACAACATCTTCAAAGTACCCCTGGCTTATGTTGTATCTTCGTGCAGATGCAACAAAAGGACTTAATGGTGGTTATCACTATGATGGTCGTGGCATCATGAGAAAGCTGCCAGTCTCTCCACATTTTAAAGTAAGATTGACACTAGATGTTAAACGTGGAGGAGGCTCCAACAGTCAATTTTATCTCCTTGACATAGGAAGCTGTTGGAAGAACAATGGAAAACCATGTGATGGTAATGTTCTGACAGATGTGACTAGATACAGTGAAATGATAATAAATCCAGAAACTACAAGCTGGTGTCGGCCGGATAACCTTGTTTCCTGCCCTCCTTACCATGTTACTCGTACTGGTGATATAATATATCGAAACGAAACATCTCGGTTTCCATATTCTGCTTATCATCTCTACTGCACACCTGGAAATGCTGAATTTCTGGAGAAACCATATGACATATGTGACCCATATAGCAATCCACAAGCACAAGAACTGGTACAAATTCTTCCACATCCTGAATGGGCTGTACATGGCTATCCTGCTAAACAAGGAGATGGATGGGTTGGAGACCCCAGGACATGGGAGCTTGATGTGGGGGCCCTCTCTAGCCAGTTGTATTTCTACCAGGACCCAGGAACAAAACCAGCACGGAGAGTATGGTCTTCGATTAATGTTGGTACAGAAATATATGTCAGTAGCCCAGGAGAGACTGCGGAATGGACTGTAAGTGATTTTGATGTGCTCGTTCCTGAAGGTGTTGAAGATGGTTCTAGCTCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

519

Amino Acids

57.98

Weight (kDa)

5.43

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 569, 1010, 1353
AccI GTMKAC 1 cut(s) 600
AciI CCGC 2 cut(s) 338, 1487
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 2 cut(s) 219, 1082
AcsI RAATTY 6 cut(s) 166, 439, 487, 556, 1208, 1275
AcuI CTGAAG 1 cut(s) 1545
AfaI GTAC 6 cut(s) 101, 797, 1126, 1272, 1302, 1453
AfiI CCNNNNNNNGG 7 cut(s) 203, 217, 280, 521, 569, 1010, 1353
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 792, 1535
AjnI CCWGG 8 cut(s) 121, 212, 800, 1195, 1346, 1398, 1405, 1474
AluBI AGCT 7 cut(s) 20, 161, 886, 981, 1074, 1360, 1548
AluI AGCT 7 cut(s) 20, 161, 886, 981, 1074, 1360, 1548
Alw21I GWGCWC 1 cut(s) 1518
Alw26I GTCTC 6 cut(s) 94, 111, 733, 898, 1335, 1475
AlwI GGATC 1 cut(s) 443
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 3 cut(s) 219, 1082, 1371
ApaI GGGCCC 1 cut(s) 1375
ApeKI GCWGC 2 cut(s) 207, 886
ApoI RAATTY 6 cut(s) 166, 439, 487, 556, 1208, 1275
AseI ATTAAT 1 cut(s) 1443
AspA2I CCTAGG 1 cut(s) 274
AspS9I GGNCC 4 cut(s) 267, 1371, 1372, 1402
AsuHPI GGTGA 4 cut(s) 83, 353, 644, 1142
AvaII GGWCC 2 cut(s) 267, 1402
AvrII CCTAGG 1 cut(s) 274
BaeGI GKGCMC 2 cut(s) 752, 1375
BanII GRGCYC 1 cut(s) 1375
BarI GAAGNNNNNNTAC 4 cut(s) 701, 733, 1263, 1295
BbsI GAAGAC 1 cut(s) 1428
Bbv12I GWGCWC 1 cut(s) 1518
BbvI GCAGC 2 cut(s) 219, 873
BccI CCATC 6 cut(s) 460, 857, 1004, 1322, 1326, 1532
BciT130I CCWGG 8 cut(s) 123, 214, 802, 1197, 1348, 1400, 1407, 1476
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 6 cut(s) 94, 111, 733, 898, 1335, 1475
BfaI CTAG 5 cut(s) 275, 923, 1035, 1380, 1545
BfrI CTTAAG 1 cut(s) 476
BisI GCNGC 2 cut(s) 208, 887
BlnI CCTAGG 1 cut(s) 274
BlsI GCNGC 2 cut(s) 209, 888
Bme1390I CCNGG 8 cut(s) 123, 214, 802, 1197, 1348, 1400, 1407, 1476
Bme18I GGWCC 2 cut(s) 267, 1402
BmgT120I GGNCC 4 cut(s) 267, 1371, 1372, 1402
BmiI GGNNCC 4 cut(s) 946, 1372, 1373, 1404
BmrFI CCNGG 8 cut(s) 123, 214, 802, 1197, 1348, 1400, 1407, 1476
BmsI GCATC 3 cut(s) 673, 817, 882
BpiI GAAGAC 1 cut(s) 1428
BpmI CTGGAG 1 cut(s) 1235
BpuEI CTTGAG 1 cut(s) 598
BsaI GGTCTC 2 cut(s) 111, 1335
BsaJI CCNNGG 8 cut(s) 121, 212, 274, 452, 800, 1346, 1405, 1474
Bsc4I CCNNNNNNNGG 7 cut(s) 203, 217, 280, 521, 569, 1010, 1353
Bse118I RCCGGY 1 cut(s) 529
Bse1I ACTGG 4 cut(s) 890, 1132, 1272, 1384
Bse3DI GCAATG 1 cut(s) 181
BseBI CCWGG 8 cut(s) 123, 214, 802, 1197, 1348, 1400, 1407, 1476
BseDI CCNNGG 8 cut(s) 121, 212, 274, 452, 800, 1346, 1405, 1474
BseGI GGATG 3 cut(s) 471, 1285, 1337
BseLI CCNNNNNNNGG 7 cut(s) 203, 217, 280, 521, 569, 1010, 1353
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 30, 105
BseNI ACTGG 4 cut(s) 890, 1132, 1272, 1384
BseRI GAGGAG 1 cut(s) 954
BseSI GKGCMC 2 cut(s) 752, 1375
BseX3I CGGCCG 1 cut(s) 1082
BseXI GCAGC 2 cut(s) 219, 873
BsgI GTGCAG 2 cut(s) 843, 1174
Bsh1285I CGRYCG 1 cut(s) 1085
BshFI GGCC 3 cut(s) 221, 1084, 1373
BsiEI CGRYCG 1 cut(s) 1085
BsiHKAI GWGCWC 1 cut(s) 1518
BsiSI CCGG 2 cut(s) 530, 1085
BslI CCNNNNNNNGG 7 cut(s) 203, 217, 280, 521, 569, 1010, 1353
BsmAI GTCTC 6 cut(s) 94, 111, 733, 898, 1335, 1475
BsnI GGCC 3 cut(s) 221, 1084, 1373
Bso31I GGTCTC 2 cut(s) 111, 1335
Bsp120I GGGCCC 1 cut(s) 1371
Bsp1286I GDGCHC 3 cut(s) 752, 1375, 1518
Bsp1407I TGTACA 1 cut(s) 1300
Bsp143I GATC 4 cut(s) 73, 253, 448, 676
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 2 cut(s) 338, 1487
BspANI GGCC 3 cut(s) 221, 1084, 1373
BspCNI CTCAG 2 cut(s) 29, 104
BspHI TCATGA 1 cut(s) 876
BspLI GGNNCC 4 cut(s) 946, 1372, 1373, 1404
BspPI GGATC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 2 cut(s) 111, 1335
BsrDI GCAATG 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 529
BsrGI TGTACA 1 cut(s) 1300
BsrI ACTGG 4 cut(s) 890, 1132, 1272, 1384
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 8 cut(s) 121, 212, 274, 452, 800, 1346, 1405, 1474
BssMI GATC 4 cut(s) 73, 253, 448, 676
BssT1I CCWWGG 2 cut(s) 274, 452
Bst2UI CCWGG 8 cut(s) 123, 214, 802, 1197, 1348, 1400, 1407, 1476
Bst4CI ACNGT 5 cut(s) 88, 411, 953, 1043, 1498
BstAFI CTTAAG 1 cut(s) 476
BstAUI TGTACA 1 cut(s) 1300
BstC8I GCNNGC 2 cut(s) 219, 527
BstDEI CTNAG 2 cut(s) 16, 91
BstDSI CCRYGG 1 cut(s) 452
BstEII GGTNACC 1 cut(s) 632
BstF5I GGATG 3 cut(s) 471, 1285, 1337
BstKTI GATC 4 cut(s) 76, 256, 451, 679
BstMAI GTCTC 6 cut(s) 94, 111, 733, 898, 1335, 1475
BstMBI GATC 4 cut(s) 73, 253, 448, 676
BstMCI CGRYCG 1 cut(s) 1085
BstMWI GCNNNNNNNGC 2 cut(s) 158, 227
BstNI CCWGG 8 cut(s) 123, 214, 802, 1197, 1348, 1400, 1407, 1476
BstPI GGTNACC 1 cut(s) 632
BstSCI CCNGG 8 cut(s) 121, 212, 800, 1195, 1346, 1398, 1405, 1474
BstSLI GKGCMC 2 cut(s) 752, 1375
BstV1I GCAGC 2 cut(s) 219, 873
BstV2I GAAGAC 1 cut(s) 1428
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BstZI CGGCCG 1 cut(s) 1082
BsuRI GGCC 3 cut(s) 221, 1084, 1373
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 3 cut(s) 471, 1285, 1337
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 3 cut(s) 84, 648, 1048
Cac8I GCNNGC 2 cut(s) 219, 527
CaiI CAGNNNCTG 1 cut(s) 383
CciI TCATGA 1 cut(s) 876
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 4 cut(s) 267, 1371, 1372, 1402
Csp6I GTAC 6 cut(s) 100, 796, 1125, 1271, 1301, 1452
CviQI GTAC 6 cut(s) 100, 796, 1125, 1271, 1301, 1452
DdeI CTNAG 2 cut(s) 16, 91
DpnI GATC 4 cut(s) 75, 255, 450, 678
DpnII GATC 4 cut(s) 73, 253, 448, 676
DraI TTTAAA 1 cut(s) 907
EaeI YGGCCR 2 cut(s) 219, 1082
EagI CGGCCG 1 cut(s) 1082
EclXI CGGCCG 1 cut(s) 1082
Eco130I CCWWGG 2 cut(s) 274, 452
Eco24I GRGCYC 1 cut(s) 1375
Eco31I GGTCTC 2 cut(s) 111, 1335
Eco47I GGWCC 2 cut(s) 267, 1402
Eco52I CGGCCG 1 cut(s) 1082
Eco57I CTGAAG 1 cut(s) 1545
Eco91I GGTNACC 1 cut(s) 632
EcoO109I RGGNCCY 4 cut(s) 267, 1371, 1372, 1402
EcoO65I GGTNACC 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 8 cut(s) 121, 212, 800, 1195, 1346, 1398, 1405, 1474
EcoT14I CCWWGG 2 cut(s) 274, 452
EcoT38I GRGCYC 1 cut(s) 1375
ErhI CCWWGG 2 cut(s) 274, 452
FauI CCCGC 1 cut(s) 331
FauNDI CATATG 2 cut(s) 1225, 1232
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 2 cut(s) 208, 887
FokI GGATG 3 cut(s) 478, 1272, 1344
FriOI GRGCYC 1 cut(s) 1375
Fsp4HI GCNGC 2 cut(s) 208, 887
FspBI CTAG 5 cut(s) 275, 923, 1035, 1380, 1545
GluI GCNGC 2 cut(s) 208, 887
GsuI CTGGAG 1 cut(s) 1235
HaeIII GGCC 3 cut(s) 221, 1084, 1373
HapII CCGG 2 cut(s) 530, 1085
HincII GTYRAC 1 cut(s) 50
HindII GTYRAC 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 3 cut(s) 298, 317, 586
HpaII CCGG 2 cut(s) 530, 1085
HphI GGTGA 4 cut(s) 83, 353, 644, 1142
Hpy166II GTNNAC 2 cut(s) 50, 601
Hpy188I TCNGA 5 cut(s) 94, 322, 438, 448, 1023
Hpy188III TCNNGA 8 cut(s) 515, 615, 680, 877, 1061, 1214, 1289, 1523
Hpy8I GTNNAC 2 cut(s) 50, 601
HpyAV CCTTC 1 cut(s) 1520
HpyCH4III ACNGT 5 cut(s) 88, 411, 953, 1043, 1498
HpyCH4IV ACGT 1 cut(s) 934
HpyCH4V TGCA 7 cut(s) 64, 152, 174, 395, 824, 830, 1191
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 227
HpyF3I CTNAG 2 cut(s) 16, 91
HpySE526I ACGT 1 cut(s) 934
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 4 cut(s) 73, 253, 448, 676
LmnI GCTCC 2 cut(s) 950, 1357
Lsp1109I GCAGC 2 cut(s) 219, 873
LweI GCATC 3 cut(s) 673, 817, 882
MaeI CTAG 5 cut(s) 275, 923, 1035, 1380, 1545
MaeII ACGT 1 cut(s) 934
MaeIII GTNAC 5 cut(s) 544, 632, 1030, 1117, 1235
MalI GATC 4 cut(s) 75, 255, 450, 678
MboI GATC 4 cut(s) 73, 253, 448, 676
MboII GAAGA 8 cut(s) 142, 721, 780, 809, 1000, 1271, 1428, 1547
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 3 cut(s) 752, 1375, 1518
MmeI TCCRAC 5 cut(s) 163, 740, 965, 972, 1318
MnlI CCTC 7 cut(s) 280, 424, 650, 932, 935, 1116, 1385
MseI TTAA 7 cut(s) 366, 477, 650, 843, 906, 930, 1443
MslI CAYNNNNRTG 2 cut(s) 69, 861
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 2 cut(s) 530, 1085
MspR9I CCNGG 8 cut(s) 123, 214, 802, 1197, 1348, 1400, 1407, 1476
MvaI CCWGG 8 cut(s) 123, 214, 802, 1197, 1348, 1400, 1407, 1476
MwoI GCNNNNNNNGC 2 cut(s) 158, 227
NcoI CCATGG 1 cut(s) 452
NdeI CATATG 2 cut(s) 1225, 1232
NdeII GATC 4 cut(s) 73, 253, 448, 676
NlaIV GGNNCC 4 cut(s) 946, 1372, 1373, 1404
NmuCI GTSAC 3 cut(s) 632, 1030, 1235
PagI TCATGA 1 cut(s) 876
PfeI GAWTC 3 cut(s) 298, 317, 586
PflMI CCANNNNNTGG 3 cut(s) 569, 1010, 1353
PkrI GCNGC 2 cut(s) 209, 888
PpuMI RGGWCCY 2 cut(s) 267, 1402
PshBI ATTAAT 1 cut(s) 1443
Psp5II RGGWCCY 2 cut(s) 267, 1402
Psp6I CCWGG 8 cut(s) 121, 212, 800, 1195, 1346, 1398, 1405, 1474
PspEI GGTNACC 1 cut(s) 632
PspGI CCWGG 8 cut(s) 121, 212, 800, 1195, 1346, 1398, 1405, 1474
PspN4I GGNNCC 4 cut(s) 946, 1372, 1373, 1404
PspOMI GGGCCC 1 cut(s) 1371
PspPI GGNCC 4 cut(s) 267, 1371, 1372, 1402
PspPPI RGGWCCY 2 cut(s) 267, 1402
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 6 cut(s) 101, 797, 1126, 1272, 1302, 1453
RsaNI GTAC 6 cut(s) 100, 796, 1125, 1271, 1301, 1452
RseI CAYNNNNRTG 2 cut(s) 69, 861
SaqAI TTAA 7 cut(s) 366, 477, 650, 843, 906, 930, 1443
SatI GCNGC 2 cut(s) 208, 887
Sau3AI GATC 4 cut(s) 73, 253, 448, 676
Sau96I GGNCC 4 cut(s) 267, 1371, 1372, 1402
ScrFI CCNGG 8 cut(s) 123, 214, 802, 1197, 1348, 1400, 1407, 1476
SduI GDGCHC 3 cut(s) 752, 1375, 1518
SfaNI GCATC 3 cut(s) 673, 817, 882
SinI GGWCC 2 cut(s) 267, 1402
SmiMI CAYNNNNRTG 2 cut(s) 69, 861
SmlI CTYRAG 2 cut(s) 476, 613
SmoI CTYRAG 2 cut(s) 476, 613
SsiI CCGC 2 cut(s) 338, 1487
SspMI CTAG 5 cut(s) 275, 923, 1035, 1380, 1545
StyD4I CCNGG 8 cut(s) 121, 212, 800, 1195, 1346, 1398, 1405, 1474
StyI CCWWGG 2 cut(s) 274, 452
TaaI ACNGT 5 cut(s) 88, 411, 953, 1043, 1498
TaiI ACGT 1 cut(s) 937
TaqI TCGA 2 cut(s) 1144, 1439
TaqII GACCGA 1 cut(s) 651
TatI WGTACW 2 cut(s) 99, 1300
TfiI GAWTC 3 cut(s) 298, 317, 586
Tru1I TTAA 7 cut(s) 366, 477, 650, 843, 906, 930, 1443
Tru9I TTAA 7 cut(s) 366, 477, 650, 843, 906, 930, 1443
TscAI CASTG 3 cut(s) 91, 648, 1048
TseFI GTSAC 3 cut(s) 632, 1030, 1235
TseI GCWGC 2 cut(s) 207, 886
Tsp45I GTSAC 3 cut(s) 632, 1030, 1235
TspDTI ATGAA 6 cut(s) 143, 192, 290, 330, 432, 599
TspGWI ACGGA 3 cut(s) 498, 563, 1438
TspRI CASTG 3 cut(s) 91, 648, 1048
Van91I CCANNNNNTGG 3 cut(s) 569, 1010, 1353
Vha464I CTTAAG 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 267, 1402
VspI ATTAAT 1 cut(s) 1443
XapI RAATTY 6 cut(s) 166, 439, 487, 556, 1208, 1275
XcmI CCANNNNNNNNNTGG 2 cut(s) 459, 1290
XmaJI CCTAGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 600
XspI CTAG 5 cut(s) 275, 923, 1035, 1380, 1545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.