BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g32760 |
| malus_domestica | MD15G1400500.v1.1 |
| prunus_persica | Prupe.1G548100_v2.0.a1 |
| pyrus_communis | pycom15g35910 |
| rosa_chinensis | RchiOBHm_Chr7g0230431 RchiOBHm_Chr7g0230451 |
| rosa_laevigata | RLG00000001493 RLG00000001495 |
| rosa_multiflora | Rmu_sc0002541.1_g000025 Rmu_sc0002541.1_g000027 Rmu_sc0007103.1_g000011 Rmu_sc0007103.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00230150 Rroxscaffold_3G00230160 |
| rosa_rugosa | Rorug07G0260500 |
| rosa_samantha | Rh7AG411100 Rh7AG411600 Rh7AG411800 Rh7BG389700 Rh7CG429200 Rh7CG429300 Rh7DG407700 Rh7DG407900 |
| rosa_wichuraiana | Rw7G034120 Rw7G034140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1547 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1187, 1530 |
| AccII | CGCG | 2 cut(s) | 26, 115 |
| AccIII | TCCGGA | 1 cut(s) | 1465 |
| AciI | CCGC | 5 cut(s) | 113, 1283, 1305, 1460, 1664 |
| AclWI | GGATC | 3 cut(s) | 447, 620, 633 |
| AcoI | YGGCCR | 1 cut(s) | 1259 |
| AcsI | RAATTY | 3 cut(s) | 229, 664, 1452 |
| AcuI | CTGAAG | 2 cut(s) | 674, 1722 |
| AcyI | GRCGYC | 1 cut(s) | 1050 |
| AfaI | GTAC | 8 cut(s) | 269, 474, 779, 1089, 1479, 1568, 1630, 1692 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 371, 698, 746, 1187, 1530 |
| AflII | CTTAAG | 3 cut(s) | 508, 532, 709 |
| AflIII | ACRYGT | 2 cut(s) | 24, 270 |
| AgsI | TTSAA | 4 cut(s) | 47, 544, 969, 1712 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 244, 256 |
| AhlI | ACTAGT | 1 cut(s) | 1693 |
| AjiI | CACGTC | 3 cut(s) | 273, 457, 1530 |
| AjnI | CCWGG | 8 cut(s) | 380, 908, 977, 1372, 1489, 1523, 1575, 1582 |
| AluBI | AGCT | 7 cut(s) | 185, 329, 1063, 1158, 1251, 1537, 1725 |
| AluI | AGCT | 7 cut(s) | 185, 329, 1063, 1158, 1251, 1537, 1725 |
| Alw21I | GWGCWC | 1 cut(s) | 929 |
| Alw26I | GTCTC | 5 cut(s) | 279, 910, 1077, 1279, 1652 |
| AlwI | GGATC | 3 cut(s) | 447, 620, 633 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 560 |
| Ama87I | CYCGRG | 2 cut(s) | 289, 1651 |
| Aor13HI | TCCGGA | 1 cut(s) | 1465 |
| AoxI | GGCC | 2 cut(s) | 1121, 1259 |
| ApeKI | GCWGC | 2 cut(s) | 375, 1063 |
| ApoI | RAATTY | 3 cut(s) | 229, 664, 1452 |
| AseI | ATTAAT | 1 cut(s) | 1620 |
| AspLEI | GCGC | 2 cut(s) | 364, 1370 |
| AspS9I | GGNCC | 3 cut(s) | 444, 1121, 1579 |
| AsuC2I | CCSGG | 3 cut(s) | 290, 291, 366 |
| AsuHPI | GGTGA | 4 cut(s) | 64, 248, 761, 1319 |
| AvaI | CYCGRG | 2 cut(s) | 289, 1651 |
| AvaII | GGWCC | 2 cut(s) | 444, 1579 |
| BaeGI | GKGCMC | 1 cut(s) | 1552 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 761, 794 |
| BamHI | GGATCC | 1 cut(s) | 625 |
| BanI | GGYRCC | 1 cut(s) | 1547 |
| BauI | CACGAG | 1 cut(s) | 773 |
| BbsI | GAAGAC | 1 cut(s) | 1605 |
| Bbv12I | GWGCWC | 1 cut(s) | 929 |
| BbvI | GCAGC | 2 cut(s) | 387, 1050 |
| BccI | CCATC | 6 cut(s) | 157, 637, 1034, 1181, 1365, 1503 |
| BceAI | ACGGC | 1 cut(s) | 156 |
| BciT130I | CCWGG | 8 cut(s) | 382, 910, 979, 1374, 1491, 1525, 1577, 1584 |
| BciVI | GTATCC | 1 cut(s) | 984 |
| BcnI | CCSGG | 3 cut(s) | 290, 291, 366 |
| BcoDI | GTCTC | 5 cut(s) | 279, 910, 1077, 1279, 1652 |
| BcuI | ACTAGT | 1 cut(s) | 1693 |
| BfaI | CTAG | 3 cut(s) | 1212, 1557, 1694 |
| BfoI | RGCGCY | 1 cut(s) | 365 |
| BfrI | CTTAAG | 3 cut(s) | 508, 532, 709 |
| BfuI | GTATCC | 1 cut(s) | 984 |
| BisI | GCNGC | 2 cut(s) | 376, 1064 |
| BlsI | GCNGC | 2 cut(s) | 377, 1065 |
| Bme18I | GGWCC | 2 cut(s) | 444, 1579 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 244, 256 |
| BmeT110I | CYCGRG | 2 cut(s) | 289, 1651 |
| BmgBI | CACGTC | 3 cut(s) | 273, 457, 1530 |
| BmgT120I | GGNCC | 3 cut(s) | 444, 1121, 1579 |
| BmiI | GGNNCC | 4 cut(s) | 302, 627, 1549, 1581 |
| BmsI | GCATC | 4 cut(s) | 112, 850, 994, 1471 |
| BpiI | GAAGAC | 1 cut(s) | 1605 |
| BpmI | CTGGAG | 2 cut(s) | 852, 1412 |
| Bpu10I | CCTNAGC | 1 cut(s) | 923 |
| BpuEI | CTTGAG | 1 cut(s) | 775 |
| BpuMI | CCSGG | 3 cut(s) | 290, 291, 366 |
| BsaHI | GRCGYC | 1 cut(s) | 1050 |
| BsaI | GGTCTC | 2 cut(s) | 279, 910 |
| BsaJI | CCNNGG | 7 cut(s) | 289, 380, 629, 977, 1373, 1523, 1582 |
| BsaWI | WCCGGW | 1 cut(s) | 1465 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 452, 482, 1259, 1289 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 371, 698, 746, 1187, 1530 |
| Bse118I | RCCGGY | 1 cut(s) | 1560 |
| Bse1I | ACTGG | 2 cut(s) | 835, 1067 |
| Bse3DI | GCAATG | 1 cut(s) | 349 |
| BseAI | TCCGGA | 1 cut(s) | 1465 |
| BseBI | CCWGG | 8 cut(s) | 382, 910, 979, 1374, 1491, 1525, 1577, 1584 |
| BseDI | CCNNGG | 7 cut(s) | 289, 380, 629, 977, 1373, 1523, 1582 |
| BseGI | GGATG | 3 cut(s) | 648, 1462, 1514 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 371, 698, 746, 1187, 1530 |
| BseMI | GCAATG | 1 cut(s) | 349 |
| BseMII | CTCAG | 1 cut(s) | 914 |
| BseNI | ACTGG | 2 cut(s) | 835, 1067 |
| BseRI | GAGGAG | 1 cut(s) | 1131 |
| BseSI | GKGCMC | 1 cut(s) | 1552 |
| BseXI | GCAGC | 2 cut(s) | 387, 1050 |
| BsgI | GTGCAG | 1 cut(s) | 1020 |
| Bsh1236I | CGCG | 2 cut(s) | 26, 115 |
| Bsh1285I | CGRYCG | 1 cut(s) | 264 |
| BshFI | GGCC | 2 cut(s) | 1123, 1261 |
| BshNI | GGYRCC | 1 cut(s) | 1547 |
| BsiEI | CGRYCG | 1 cut(s) | 264 |
| BsiHKAI | GWGCWC | 1 cut(s) | 929 |
| BsiHKCI | CYCGRG | 2 cut(s) | 289, 1651 |
| BsiSI | CCGG | 4 cut(s) | 290, 366, 1466, 1561 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 371, 698, 746, 1187, 1530 |
| BsmAI | GTCTC | 5 cut(s) | 279, 910, 1077, 1279, 1652 |
| BsmI | GAATGC | 1 cut(s) | 1384 |
| BsnI | GGCC | 2 cut(s) | 1123, 1261 |
| Bso31I | GGTCTC | 2 cut(s) | 279, 910 |
| BsoBI | CYCGRG | 2 cut(s) | 289, 1651 |
| Bsp1286I | GDGCHC | 2 cut(s) | 929, 1552 |
| Bsp13I | TCCGGA | 1 cut(s) | 1465 |
| Bsp1407I | TGTACA | 1 cut(s) | 1477 |
| Bsp143I | GATC | 3 cut(s) | 439, 625, 853 |
| Bsp19I | CCATGG | 1 cut(s) | 629 |
| BspACI | CCGC | 5 cut(s) | 113, 1283, 1305, 1460, 1664 |
| BspANI | GGCC | 2 cut(s) | 1123, 1261 |
| BspCNI | CTCAG | 1 cut(s) | 915 |
| BspEI | TCCGGA | 1 cut(s) | 1465 |
| BspFNI | CGCG | 2 cut(s) | 26, 115 |
| BspHI | TCATGA | 1 cut(s) | 1053 |
| BspLI | GGNNCC | 4 cut(s) | 302, 627, 1549, 1581 |
| BspPI | GGATC | 3 cut(s) | 447, 620, 633 |
| BspT107I | GGYRCC | 1 cut(s) | 1547 |
| BspTI | CTTAAG | 3 cut(s) | 508, 532, 709 |
| BspTNI | GGTCTC | 2 cut(s) | 279, 910 |
| BsrDI | GCAATG | 1 cut(s) | 349 |
| BsrFI | RCCGGY | 1 cut(s) | 1560 |
| BsrGI | TGTACA | 1 cut(s) | 1477 |
| BsrI | ACTGG | 2 cut(s) | 835, 1067 |
| BssAI | RCCGGY | 1 cut(s) | 1560 |
| BssECI | CCNNGG | 7 cut(s) | 289, 380, 629, 977, 1373, 1523, 1582 |
| BssMI | GATC | 3 cut(s) | 439, 625, 853 |
| BssNI | GRCGYC | 1 cut(s) | 1050 |
| BssSI | CACGAG | 1 cut(s) | 773 |
| BssT1I | CCWWGG | 1 cut(s) | 629 |
| Bst2BI | CACGAG | 1 cut(s) | 773 |
| Bst2UI | CCWGG | 8 cut(s) | 382, 910, 979, 1374, 1491, 1525, 1577, 1584 |
| Bst4CI | ACNGT | 8 cut(s) | 153, 219, 418, 588, 809, 1130, 1300, 1675 |
| BstACI | GRCGYC | 1 cut(s) | 1050 |
| BstAFI | CTTAAG | 3 cut(s) | 508, 532, 709 |
| BstAUI | TGTACA | 1 cut(s) | 1477 |
| BstC8I | GCNNGC | 5 cut(s) | 387, 517, 704, 999, 1283 |
| BstDEI | CTNAG | 1 cut(s) | 923 |
| BstDSI | CCRYGG | 1 cut(s) | 629 |
| BstEII | GGTNACC | 2 cut(s) | 809, 1028 |
| BstF5I | GGATG | 3 cut(s) | 648, 1462, 1514 |
| BstFNI | CGCG | 2 cut(s) | 26, 115 |
| BstH2I | RGCGCY | 1 cut(s) | 365 |
| BstHHI | GCGC | 2 cut(s) | 364, 1370 |
| BstKTI | GATC | 3 cut(s) | 442, 628, 856 |
| BstMAI | GTCTC | 5 cut(s) | 279, 910, 1077, 1279, 1652 |
| BstMBI | GATC | 3 cut(s) | 439, 625, 853 |
| BstMCI | CGRYCG | 1 cut(s) | 264 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 32, 326, 375, 395 |
| BstNI | CCWGG | 8 cut(s) | 382, 910, 979, 1374, 1491, 1525, 1577, 1584 |
| BstPI | GGTNACC | 2 cut(s) | 809, 1028 |
| BstSLI | GKGCMC | 1 cut(s) | 1552 |
| BstUI | CGCG | 2 cut(s) | 26, 115 |
| BstV1I | GCAGC | 2 cut(s) | 387, 1050 |
| BstV2I | GAAGAC | 1 cut(s) | 1605 |
| BstX2I | RGATCY | 1 cut(s) | 625 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1040 |
| BstYI | RGATCY | 1 cut(s) | 625 |
| BsuI | GTATCC | 1 cut(s) | 984 |
| BsuRI | GGCC | 2 cut(s) | 1123, 1261 |
| BtgI | CCRYGG | 1 cut(s) | 629 |
| BtrI | CACGTC | 3 cut(s) | 273, 457, 1530 |
| BtsCI | GGATG | 3 cut(s) | 648, 1462, 1514 |
| BtsIMutI | CAGTG | 1 cut(s) | 1074 |
| Cac8I | GCNNGC | 5 cut(s) | 387, 517, 704, 999, 1283 |
| CaiI | CAGNNNCTG | 1 cut(s) | 560 |
| CciI | TCATGA | 1 cut(s) | 1053 |
| CfoI | GCGC | 2 cut(s) | 364, 1370 |
| Cfr10I | RCCGGY | 1 cut(s) | 1560 |
| Cfr13I | GGNCC | 3 cut(s) | 444, 1121, 1579 |
| Cfr9I | CCCGGG | 1 cut(s) | 289 |
| CseI | GACGC | 2 cut(s) | 15, 1039 |
| Csp6I | GTAC | 8 cut(s) | 268, 473, 778, 1088, 1478, 1567, 1629, 1691 |
| CviAII | CATG | 9 cut(s) | 370, 630, 649, 741, 760, 1054, 1182, 1292, 1481 |
| CviQI | GTAC | 8 cut(s) | 268, 473, 778, 1088, 1478, 1567, 1629, 1691 |
| DdeI | CTNAG | 1 cut(s) | 923 |
| DpnI | GATC | 3 cut(s) | 441, 627, 855 |
| DpnII | GATC | 3 cut(s) | 439, 625, 853 |
| DraI | TTTAAA | 1 cut(s) | 1084 |
| DriI | GACNNNNNGTC | 2 cut(s) | 244, 256 |
| EaeI | YGGCCR | 1 cut(s) | 1259 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 244, 256 |
| Eco130I | CCWWGG | 1 cut(s) | 629 |
| Eco31I | GGTCTC | 2 cut(s) | 279, 910 |
| Eco32I | GATATC | 1 cut(s) | 403 |
| Eco47I | GGWCC | 2 cut(s) | 444, 1579 |
| Eco57I | CTGAAG | 2 cut(s) | 674, 1722 |
| Eco88I | CYCGRG | 2 cut(s) | 289, 1651 |
| Eco91I | GGTNACC | 2 cut(s) | 809, 1028 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1579 |
| EcoO65I | GGTNACC | 2 cut(s) | 809, 1028 |
| EcoRII | CCWGG | 8 cut(s) | 380, 908, 977, 1372, 1489, 1523, 1575, 1582 |
| EcoRV | GATATC | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 1 cut(s) | 629 |
| ErhI | CCWWGG | 1 cut(s) | 629 |
| FaeI | CATG | 9 cut(s) | 373, 633, 652, 744, 763, 1057, 1185, 1295, 1484 |
| FatI | CATG | 9 cut(s) | 369, 629, 648, 740, 759, 1053, 1181, 1291, 1480 |
| FauI | CCCGC | 2 cut(s) | 120, 1290 |
| FauNDI | CATATG | 1 cut(s) | 1402 |
| Fnu4HI | GCNGC | 2 cut(s) | 376, 1064 |
| FokI | GGATG | 3 cut(s) | 655, 1449, 1521 |
| Fsp4HI | GCNGC | 2 cut(s) | 376, 1064 |
| FspBI | CTAG | 3 cut(s) | 1212, 1557, 1694 |
| GlaI | GCGC | 2 cut(s) | 363, 1369 |
| GluI | GCNGC | 2 cut(s) | 376, 1064 |
| GsuI | CTGGAG | 2 cut(s) | 852, 1412 |
| HaeII | RGCGCY | 1 cut(s) | 365 |
| HaeIII | GGCC | 2 cut(s) | 1123, 1261 |
| HapII | CCGG | 4 cut(s) | 290, 366, 1466, 1561 |
| HgaI | GACGC | 2 cut(s) | 15, 1039 |
| HhaI | GCGC | 2 cut(s) | 364, 1370 |
| Hin1I | GRCGYC | 1 cut(s) | 1050 |
| Hin1II | CATG | 9 cut(s) | 373, 633, 652, 744, 763, 1057, 1185, 1295, 1484 |
| Hin6I | GCGC | 2 cut(s) | 362, 1368 |
| HinP1I | GCGC | 2 cut(s) | 362, 1368 |
| HincII | GTYRAC | 2 cut(s) | 215, 957 |
| HindII | GTYRAC | 2 cut(s) | 215, 957 |
| HindIII | AAGCTT | 1 cut(s) | 327 |
| HinfI | GANTC | 3 cut(s) | 251, 257, 494 |
| HpaII | CCGG | 4 cut(s) | 290, 366, 1466, 1561 |
| HphI | GGTGA | 4 cut(s) | 64, 248, 761, 1319 |
| Hpy166II | GTNNAC | 5 cut(s) | 215, 270, 473, 778, 957 |
| Hpy188I | TCNGA | 8 cut(s) | 250, 256, 414, 444, 499, 625, 805, 1200 |
| Hpy8I | GTNNAC | 5 cut(s) | 215, 270, 473, 778, 957 |
| Hpy99I | CGWCG | 1 cut(s) | 277 |
| HpyAV | CCTTC | 5 cut(s) | 156, 746, 879, 1697, 1706 |
| HpyCH4III | ACNGT | 8 cut(s) | 153, 219, 418, 588, 809, 1130, 1300, 1675 |
| HpyCH4IV | ACGT | 5 cut(s) | 272, 456, 1111, 1529, 1641 |
| HpyCH4V | TGCA | 6 cut(s) | 342, 572, 759, 1001, 1007, 1450 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 32, 326, 375, 395 |
| HpyF3I | CTNAG | 1 cut(s) | 923 |
| HpySE526I | ACGT | 5 cut(s) | 272, 456, 1111, 1529, 1641 |
| Hsp92I | GRCGYC | 1 cut(s) | 1050 |
| Hsp92II | CATG | 9 cut(s) | 373, 633, 652, 744, 763, 1057, 1185, 1295, 1484 |
| HspAI | GCGC | 2 cut(s) | 362, 1368 |
| Kpn2I | TCCGGA | 1 cut(s) | 1465 |
| Kzo9I | GATC | 3 cut(s) | 439, 625, 853 |
| LmnI | GCTCC | 3 cut(s) | 130, 1375, 1534 |
| Lsp1109I | GCAGC | 2 cut(s) | 387, 1050 |
| LweI | GCATC | 4 cut(s) | 112, 850, 994, 1471 |
| MaeI | CTAG | 3 cut(s) | 1212, 1557, 1694 |
| MaeII | ACGT | 5 cut(s) | 272, 456, 1111, 1529, 1641 |
| MalI | GATC | 3 cut(s) | 441, 627, 855 |
| MboI | GATC | 3 cut(s) | 439, 625, 853 |
| MboII | GAAGA | 7 cut(s) | 61, 125, 667, 957, 1177, 1448, 1605 |
| MflI | RGATCY | 1 cut(s) | 625 |
| MhlI | GDGCHC | 2 cut(s) | 929, 1552 |
| MluCI | AATT | 7 cut(s) | 229, 616, 664, 717, 818, 1442, 1452 |
| MluI | ACGCGT | 1 cut(s) | 24 |
| MlyI | GAGTC | 2 cut(s) | 245, 266 |
| MmeI | TCCRAC | 6 cut(s) | 228, 303, 331, 437, 917, 1142 |
| MroI | TCCGGA | 1 cut(s) | 1465 |
| MseI | TTAA | 9 cut(s) | 489, 509, 533, 710, 1020, 1083, 1094, 1107, 1620 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1038 |
| MspCI | CTTAAG | 3 cut(s) | 508, 532, 709 |
| MspI | CCGG | 4 cut(s) | 290, 366, 1466, 1561 |
| Mva1269I | GAATGC | 1 cut(s) | 1384 |
| MvaI | CCWGG | 8 cut(s) | 382, 910, 979, 1374, 1491, 1525, 1577, 1584 |
| MvnI | CGCG | 2 cut(s) | 26, 115 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 32, 326, 375, 395 |
| NciI | CCSGG | 3 cut(s) | 290, 291, 366 |
| NcoI | CCATGG | 1 cut(s) | 629 |
| NdeI | CATATG | 1 cut(s) | 1402 |
| NdeII | GATC | 3 cut(s) | 439, 625, 853 |
| NlaIII | CATG | 9 cut(s) | 373, 633, 652, 744, 763, 1057, 1185, 1295, 1484 |
| NlaIV | GGNNCC | 4 cut(s) | 302, 627, 1549, 1581 |
| NmuCI | GTSAC | 4 cut(s) | 236, 826, 1307, 1412 |
| PagI | TCATGA | 1 cut(s) | 1053 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 112 |
| PctI | GAATGC | 1 cut(s) | 1384 |
| PfeI | GAWTC | 1 cut(s) | 494 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1187, 1530 |
| PfoI | TCCNGGA | 1 cut(s) | 1489 |
| PkrI | GCNGC | 2 cut(s) | 377, 1065 |
| PleI | GAGTC | 2 cut(s) | 245, 265 |
| PpsI | GAGTC | 2 cut(s) | 245, 265 |
| PpuMI | RGGWCCY | 1 cut(s) | 1579 |
| PshBI | ATTAAT | 1 cut(s) | 1620 |
| Psp5II | RGGWCCY | 1 cut(s) | 1579 |
| Psp6I | CCWGG | 8 cut(s) | 380, 908, 977, 1372, 1489, 1523, 1575, 1582 |
| PspEI | GGTNACC | 2 cut(s) | 809, 1028 |
| PspGI | CCWGG | 8 cut(s) | 380, 908, 977, 1372, 1489, 1523, 1575, 1582 |
| PspN4I | GGNNCC | 4 cut(s) | 302, 627, 1549, 1581 |
| PspPI | GGNCC | 3 cut(s) | 444, 1121, 1579 |
| PspPPI | RGGWCCY | 1 cut(s) | 1579 |
| PstNI | CAGNNNCTG | 1 cut(s) | 560 |
| PsuI | RGATCY | 1 cut(s) | 625 |
| RsaI | GTAC | 8 cut(s) | 269, 474, 779, 1089, 1479, 1568, 1630, 1692 |
| RsaNI | GTAC | 8 cut(s) | 268, 473, 778, 1088, 1478, 1567, 1629, 1691 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1038 |
| SaqAI | TTAA | 9 cut(s) | 489, 509, 533, 710, 1020, 1083, 1094, 1107, 1620 |
| SatI | GCNGC | 2 cut(s) | 376, 1064 |
| Sau3AI | GATC | 3 cut(s) | 439, 625, 853 |
| Sau96I | GGNCC | 3 cut(s) | 444, 1121, 1579 |
| SchI | GAGTC | 2 cut(s) | 245, 266 |
| SduI | GDGCHC | 2 cut(s) | 929, 1552 |
| SfaNI | GCATC | 4 cut(s) | 112, 850, 994, 1471 |
| SinI | GGWCC | 2 cut(s) | 444, 1579 |
| SmaI | CCCGGG | 1 cut(s) | 291 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1038 |
| SmlI | CTYRAG | 4 cut(s) | 508, 532, 709, 790 |
| SmoI | CTYRAG | 4 cut(s) | 508, 532, 709, 790 |
| SpeI | ACTAGT | 1 cut(s) | 1693 |
| Sse9I | AATT | 7 cut(s) | 229, 616, 664, 717, 818, 1442, 1452 |
| SsiI | CCGC | 5 cut(s) | 113, 1283, 1305, 1460, 1664 |
| SspMI | CTAG | 3 cut(s) | 1212, 1557, 1694 |
| StyI | CCWWGG | 1 cut(s) | 629 |
| TaaI | ACNGT | 8 cut(s) | 153, 219, 418, 588, 809, 1130, 1300, 1675 |
| TaiI | ACGT | 5 cut(s) | 275, 459, 1114, 1532, 1644 |
| TaqI | TCGA | 3 cut(s) | 227, 264, 1616 |
| TaqII | GACCGA | 2 cut(s) | 250, 892 |
| TasI | AATT | 7 cut(s) | 229, 616, 664, 717, 818, 1442, 1452 |
| TatI | WGTACW | 5 cut(s) | 267, 472, 1477, 1566, 1690 |
| TfiI | GAWTC | 1 cut(s) | 494 |
| Tru1I | TTAA | 9 cut(s) | 489, 509, 533, 710, 1020, 1083, 1094, 1107, 1620 |
| Tru9I | TTAA | 9 cut(s) | 489, 509, 533, 710, 1020, 1083, 1094, 1107, 1620 |
| TscAI | CASTG | 1 cut(s) | 1074 |
| TseFI | GTSAC | 4 cut(s) | 236, 826, 1307, 1412 |
| TseI | GCWGC | 2 cut(s) | 375, 1063 |
| Tsp45I | GTSAC | 4 cut(s) | 236, 826, 1307, 1412 |
| TspDTI | ATGAA | 7 cut(s) | 360, 467, 507, 602, 609, 776, 1341 |
| TspGWI | ACGGA | 1 cut(s) | 590 |
| TspMI | CCCGGG | 1 cut(s) | 289 |
| TspRI | CASTG | 1 cut(s) | 1074 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1187, 1530 |
| Vha464I | CTTAAG | 3 cut(s) | 508, 532, 709 |
| VpaK11BI | GGWCC | 2 cut(s) | 444, 1579 |
| VspI | ATTAAT | 1 cut(s) | 1620 |
| XapI | RAATTY | 3 cut(s) | 229, 664, 1452 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 636 |
| XmaI | CCCGGG | 1 cut(s) | 289 |
| XspI | CTAG | 3 cut(s) | 1212, 1557, 1694 |